Contig Data
morexGenes
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Map Locations of contig_274133 (5442 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_274133

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_44071 1 918 bp None Available Available LOC_Os01g36710.1, FRAME:+3, EVALUE:6e-44, 13101.m03716 protein transposon protein, putative, Pong sub-class
MLOC_44072 1 2455 bp AK374189 Available Available None





CDS Structure of MLOC_44071






CDS Structure of MLOC_44072






Contig Sequence (5442 bp)

>contig_274133 5442 assembly3_WGSMorex_rbca.fasta
TCCAACGCCGTCGCCGAAGACGGGGGAACCGGTGGTGTCTGTCGGGGGTGGGGGGTGGGG
GGAGTTGGGAGTTGGGAAGGGGGAGACGTGCGTGGGGATGGAATTATGGGCTGTTTTCTG
GGACATGTGGTACGTGGGGGTGGGGGTGGAACGATGTGNNNCATGTCGTACGAGGGGTGG
GGATCGAGCTGGGAGGTCGAACCATAAGCGAGGTCGAACCATCACGACGACGGCAGATCC
CCCTTTAATAGTAGAGATATGGTGATTTAATGGCCTTTTCATGATGTGATTGCTAACTAA
CCTATATTCATGTGAGAAAATTTCTGCGTTGGTGATTGCATGTATTATATTGTGCTAGAG
TATCATATGGTGGCATTTCTTTTTCCACGTGATGGGAGGGTGCACGGGGTTGATTTATTT
TTATTACATCGATTGCTGCTTAATTTGGAAAATTGTTGGCATAGTCAAAGTCGTAAACCA
GATGAAAATTTCCGTGCGGCCATTTGACGTTGATGTCCGACTACTTTGCCCTCATGCCCT
CTTCGCTAATAATTCTTCACCAACGGTTGCAGATGTAAAAAAAATATCTTCGATCATTTC
TACCATGGGGTCCGGTCCTTTGATGATGACTTCATCTTTAAGAAGAACCTCATGGGAAGG
ATTGGGTTCCGCACTTACTAGGAATGCACGTTTGCATTACGGATGCTTGCATATGGCACA
AGCGCTAATTCATGGAACGAGTACCACGGATGTGTGAGAGCACATGTGGAAATGCATGGT
CAGATTTACAATTGTTGTGGTATTAGTGTTTGGACCTTGATACTTGAGAGAACCAAATGT
CAGAGACACATAGAGACTCTTGGCAATCTCGGAAGCAAGAGGGTGGTCATGTTTTTCTCG
GATCTCTTGACTCGATGCATTGGAAATGGAAGAACGACCTAAAAACTCTACAAGGGCAAT
ATCAGGGCCATGTTAAGAAGCCCATGATCACTCTTGAAGTAGTTGCATCACATGATCTTT
GGATTGGCATGATTATTTTTGGATACCCAATTCTCACAATCATATAAGTGTGCCACAACG
ATCACAATTGTTTACGAGACTTGCCGAAGGAAAAAACCTCCTCCTTGCCACTATATAGTC
AATGGGCATGAGTACAACATGAGTTAGTATCTGGTTGACGGTGCCTATCCTTTGTGGGCT
ACCTTTCTCAACACCATCTCTAGCTCAATTGACTAGAAAAATGCTCAATTTGCTCAAAGA
CAAGAAGCAGCTAGAAAGAATGTTGAGAGGGCATTTGCAGTTCTGCGGCCACGTATTGCA
ACTATTCATGGACCGGCTAAATTATGAGATGCGGAGACTTTGTGCAAGGTGATGACATGT
TGTGTGATCATGGACAACATGATCGTGGAGGGTGAGGGTGAGGATGTTGCCGCATCTTCT
GAATTTGAGAACATGAATGACCGTATCGAACTTCATGATCAGAATGTGGTCACATTTGAA
GAGTTTGTTCAAATGCATCACCAAATCCGGCATCGAGCTACTCCAACTGAAGGAAGATTC
TATCAAGAATCTGTGAACGATTAAAAGGAACACCGATGTTTGAATGTACTCTTTGAACTT
ATTTAAGTAGAAGTAGAACTACCGCTGCATTTGAATATTTGAACTATCTTACACCCCTAG
TAACGCTCTATACAAAATATTATAACGTGGTATACAAAGTATAGTAATTTTTGTAAAGAA
TATAGTAAATTGCAAACTTGGATGGTAAAAAATATCTCACAATTACTACGTTCCATACAC
TATTTTATAAGATTTTATATACAGCGTTACTATGGACGTTGAATAAGCTATTCTACACGC
ATGTTTAGAATAGTATTATCATATACGTATATGCGGTTATTTGAGTGTGCGCGGGTGAAA
AAATAATGAGGCGGGATGTATGCATGCAACATTGGATGATCGGCTCTTGTATTAGTGTTC
ACAAACTGGCCCTTGATCCACGAACAAATACCTAAGCATATTTACGGGTCAATCTTAAAG
ATGTAAGATGTTTCTACGTCCATATCAAGATAAATCTAAGATAAATATTATTTCATGGAG
TAGTAGTATAGAAGTGGCACCACTCAAACAGAGTTTGAGTCATTTGCCATCTAGCGAGCA
TGACGTTAGGATGACCTGTGCTGACCTAGATAATTGGCAATGGTGACCACAAAACTGCTT
TCCTGTCGCTTGCTCTTTTACTTTGTTAAGAGATGGATCTTGGGCTTTGATTAGCTTTTG
CCGGCTACTACGTCTTTCCGTGTTTACCAGATCTCATTGTATTTTTTGTTAAATTTGGCT
ATATACTACTCCCTCGTATTAATATATATAAGATGTTTTTAAGATTGAACTAACTTAAAA
TGTATGTGCACTCCGCAGACTAGCAAAATGTTATTGCTTGCCATAAAATCTTATATTATT
GTGTTCGTATTTAAATGTTAGTTTGCAATGATATTGTTTTCGTATGTAGAACATAGTACA
TTTTATTAGCTAAAACTGTAGTCAAATTAAGACCCAAAATAGGAGGGGCTAGACGGCTAG
TAAACTATAACAGAGGTAGTAATTACTAGATGAAAAGATAAAAAAATCATGAAGAAATGA
TGCATAGTTAGAAGCTAGAGGAACTACTACTCTACACTAAGAAATGATATATATTTTTAT
TATATATGTTTTTTATTAAAATGGTTAAATTGATGACTTAGATATATGTGTCAAACTTGA
GGGGGTACTGTTTCTTGCTCCGAAGAATCGTCGCCATGCAAGTGGTTTCCTTTTAGAAGC
AGATGCAAGCAGTGCTAGGTGTGTGACCACAGCTGGACGGTAGTAGTAGTACTAGTAATT
GTTGAGAGTTGAGACATGCAATTATCATAATCAATGCTGGTCAGAAACCCACAGAGATTT
GAAGATAAGGTTTTCCCTCGTCTCAATGGTGACCATGGATGACAGGCTAGCTTAAAACCA
TTCACCAAACCGGCCGCTCCCTCCGCCCCTAGTGTGAGCCAGCCAAGGAAGACAAAAAGC
ATGGTTTGGATCATCATTAGCTGGCTGGCTGGATGGACGGAGAGGTGTTTGTGAGTACAA
ATTGGCATTATCACCATTGTCTGGATCATTGTGATCATTGACCAAAGGACCATGTACGTG
TAAGAAGTACTAGTGGCCATCGTCCCGGTCTTAAGCCCTGTCGAGCGGTGATAATCTAAG
GTTTAATCACTTGCCATCCGGGGAGGGCAACGCCAAATAAAAGCGGGCCACTGTTAAACC
ACCATTGCAGCTGCAGGTGCACTAAATGACTGAGGCTACGACAACAACCATCTCCATGCT
CTGCAAGAGCCCATTGTTTTATTTTTCACATGTGCTCTGCCACCACATAAAATCCAAGAG
GATCATTTCCTCATTATTCCGAGAGGATCGACATGCAATGCGCGCATGATCGATGGATCG
ATCACTTGAAGCTGCCTTTTGGCCGCCCATGTCGATCGCACCAGGAATCCAAGCATCGCT
TTTCATGATGAACGCCATGGACAAAACATAAAGGGGACTTCGGTCAGCTCAGCTCAGCTC
ACGCTTTCTTTCAACGCGTTCTTCTTTTTGGACGATGGTCCATACGTACACAAGACCACC
ACACATAAATTTGAACCCGGTAAATGTACTGCTACTCCTTTGTCTTAGTCTGGCTTAAGC
ACTTGCCATGGCATCGATCGGTCAATCTGCGGCCGTCCACGTCATGTCGCCCTCGAAGAT
CCAATGGCAGACCTCCGTCTTGCCGGGCTCGCCGCCGAGGAGGACGAACGCGCCATGGCT
CGGGCTCCAGTCAGACGTGTCGAGGTGGCAGATGGCCACCCCGCGGTTGATCTTCCGGCC
GCCGCCGGCGTCGGCGGCCATGATGTCGGCCTCGTACACCCGCGCCTTGGGCACCGAGTG
GCAGTAGTACACCAGGTACGGGAACAGGCTCTGGTGGCACGACACGGCCCGCGCCGCCTT
CCCGCCGGTGACGTCCCCCAGCCTGACCTCCGCGCCGCTGCCCGCCGTCGAGGCCGTGCT
GCGCACCACGATGTCGTCCCCCAGCATCTCCACCGCGAAGTCCACGACGTCCTCCGCCGA
GGTCGCGCACCGCTTGGTCTCGCCCCGGCTCGGCGCGCGCTCGCACTCCGCCACCGTCGA
CGCCACCGCCTTGCCCATCGCCGTGTCCGGCGGCGCCCCGAAGGCCTCCGACACGGCGCT
CGCCTCGAACGGGATCTTCCTGGCGATGTCCCTCGGCAGGAACGCCCTCGGCGGCATCTT
GTCCCGGATGTCCGGCATCGGCATTCGGTTCCCGGCCACCAGCTCCCTCTCCCTGAAGAA
CTTTCCCGGCTCCGGTGACCACTTCGTCGCATGCCGCTGATGCTGCTGCTGCTCGGATGT
CGATGCCGTCGTCGACTCCGCCAACGTGTTGTGGTACTCCTTGAAGTCGACGCCGGTCTT
GGCGTACGCCTTGAACGTGGTGTTGTCGCCGGCGTACGCCTTGAACCCGATCTCGTGGTT
GCGGTTGGTGCCTTGGCCGTAGCCTTTGAAGCCGACGCTGCCGGCGTTGGCCGACCCGCC
GTAGCTCTCGAACTCGGCGGCCCCGCCGTTGGCGCCCTTGGCGTAGGACGCGAAGCTGTC
GTCCCCGACGTTGGACCCGTCGCGGTACCCCTTGAACGTGTCCACGCCGGCGTTGCCGCC
GGCCCCGTAGCTCCGGAACGTGTTCTCTGGCACGTTCCCCTCCACGCCGTACCCCGTGAA
GGTGTCGGTGGCGCCGTTGGCCGACTCGCCGTAGTTGGCGAAGCCGGAGCTGAGGGTGTT
GGTGTCGTTGCCGTACGAGGTGAAGGTCTCCCGCAGGCTGTTGCCGCTCTTGCCGTAGCC
GGAGAAGCTGCTCTCCCCGCTGTTGGCCTCCGGGGAGTAGGACGTGAACCCGCGGCTCCG
CCCGTTGGCCCCGGCGTCGTAGTTGGTGAACCTGGACTCCGGCACGTTGGTGTTCGCGGC
GTAGGAGGTGAAGGAGCCCGACCCGCCCGTGGCGCCGCCGGCGTAGGAGGTGAAGTTGGC
AGTCACCACGTTGCCGTTGGCCTCGTAGGTGCTGAACGAGTCGGCGCGGGCCGACGAGTC
CCGGCCGTAGCGGCGGAACGAGTCGCCGGCGATGTTGACGTCGGGGGAGTAGTTCTTGAA
CCCGTCGGTGCCGGCGCCGGCGCCGGAGCCGTAGTTGGTGAAGTTGGCGTCCCTGTAGCC
CGTGAACGGGCCCTTTCTTGCCGCCACATCAGATTCAGAGCCAGAGGACGACGGGCATAG
CAGAGCAGCCTTGGAGCAGAGCGTGGGCAGGCGGGCGCGGATGTCGGGGAGCGACGAGGG
GAAGGACGCGGCGTCGGCGGCGGGCAGCGGGGAGAGCTTGGA