Contig Data
morexGenes
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Map Locations of contig_274125 (5335 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_274125

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_44067 1 1132 bp MLOC_44067.1 Available Available LOC_Os01g52240.1, FRAME:+2, EVALUE:6e-171, 13101.m05463 protein chlorophyll A-B binding protein, putative, expressed
MLOC_44068 1 650 bp AK358669 Not available Available None





CDS Structure of MLOC_44067






CDS Structure of MLOC_44068






Contig Sequence (5335 bp)

>contig_274125 5335 assembly3_WGSMorex_rbca.fasta
AGGCCCCGTCCCCACTAGTGACTAGTCTAAGTCACTCATCACTTGGTCGTCACCAACTTG
TGACAAAAATTCTCCTTTATTTCCTCTTAATTTCTTGAGATGTAATACTACATGACTTGA
TCAAGGTAATGGAGAACTAATATATGAAAATCCAGAAGCCTATGCTGATAGGCATCATGA
CAATCCACCAATGAATCGAAGAGCAAATAAAATAAGATTAGGCGGTCAGGCCCGCTTGTT
CATCATGAAAAGGTCCTGCATGACGCTAAGCGCTCTCATGAGTCCGACAAATTTGTCCCG
CGTGGCCCGTTCGTCCTCGGTCCTCTCGGGGATTGGCTTGGGGCAGTCCTCCCCGCACGT
CTTCTTGAACCCCTCGACGAAAGTGAGGACCCCCGTCTCATCGCCGGGCTTGATCGTGTC
CACGGGGAGCCCCTCGAATGCCTTGGCCAGTTTATGAATGTCGTCGATGCAGTTTGAGAG
GCACTTGTCGGGGTTGGGGCTGGAGGTCGCCCTGGCATTGGCGAATCCGTTGGCCATCTT
GGCGAGCTTTGCCGCGACTTGCACGGACATCTGGGGGACGCCATTCACCTCCGGCGTGGT
GGCGCCCATGTTGGCGAGCAATACTTGCTTGCATGGGTCTGGCTGCATCGCCATGCCGCA
TGTAGCCTCGATTTCCTGGATGGTTGGGGCCGATTGGACAACTGGGGTGATGGCAAGGCC
GAAAGCACCGAGCAGTGCCAGGGCCAGGGCCGATGCCGGCATGTAAGGCATTACCATGGG
CATGGTGTACGTGTGATTTTTGATGAGCGGTGGAGCTAGACACTGACCAGTGCTTATATA
TAACCTGCATGCGAGTGTGCATGCATCTAGTCTTATTTTTGTACAAACAGGGGAATATAG
AGCTAATTGATCGGTGGTCACGAAATCAACTTTGTCTTCCTACCGGTCTGTCCACACATG
TTTCAATGGTTTGCCTTGGTTTCCGGCGGACCACTAGTATTTTTCAGGGGATGGACAATC
ACAAGAGGCAAAGAAAAACATATTTGCTCTTGTAGTCATGTCATATAGCTTTCATATTAT
ATACTCCCTTCGTCTTAAAATAAGTGTATTAAACTTAGTATAACTTTGTATTACAGCTAA
TGTAAAATTGAGACAGTTATTTTGAGACGGAGGGAGTACTTTGCTAGTTGTTGGCATTGC
TAATGGTGTGTTGGTATTGGTTGTGTGTATTTATGAAGAGGGCTTGGTGTGTGCTCATTA
TGTATGAATCCTCTTGATACTTCCTTTTGAGCTAATAATATTCATCCTTTGCCGGAAAAA
ATGTGTGCCAACCGTATGAAAATTTTCTAGAATGATCAAACTCAGCGTGCAGTAGCCAGA
TATCAAATTTGTTCGGCAAGCGCCTAGTGTGATGTACGTTGGGAAAATATGCAACACGAT
GTGGCCAAATGAACTGGTAAACTATCCCGTGCCCGTGGCCTGCACTTTTTAAACCAGCGG
TCTCTTTCGACTGGTCTTACTAAAGCTAGTCCAGTCACGAGCCTTAGCTCTAACCATAGC
CACAAGTATATCTCATCTATTTAAGGTCTCTGGCTGCACCAATGGCATTCAATCTACAGA
TTTCTTTTCGTCTCTGTCTCTCTTGTCAGCATACACCAACTAATTAATTCCTCCATGTTC
CCTCAAGGCTCAAGCTCTTTAAATAGCTCCCTACAATCTCCTCTCAAACCATCTCCACGC
ACTCTAAGCCATATTCTTGGAGAACACACAGCACACCATCAGTCTCTACAGGGCAATGGT
GGCCACCACCATGTCTCTTTCCTCTTCGTCCTTCGCCGGCAAGGCCGTGAAGAACTTGCC
CTCGCCGGCTCACATTGGCGAGGCACGTGTGACCATGCGCAAGACCGCCGTGAAGGCCAA
GCAGGTTTCGTCGGGCAGCCCATGGTATGGCTCTGACCGTGTGCTCTACCTCGGCCCCCT
TTCCGGGGAGCCGCCTAGCTACTTGACTGGTGAGTTTCCCGGTGACTACGGATGGGACAC
CGCCGGGCTCTCGGCTGATCCTGAGACCTTCGCCAAGAACCGGGAGCTCGAGGTGATTCA
TTGTCGATGGGCCATGCTCGGTGCCCTTGGTTGTGTTTTTCCCGAGTTGCTTGCCCGCAA
TGGCGTGAAGTTTGGCGAGGCCGTCTGGTTCAAGGCTGGCTCTCAGATCTTCAGCGAGGG
TGGCCTCGACTACCTTGGCAACCCCAACCTCGTTCATGCTCAGAGCATCCTCGCCATCTG
GGCTTGCCAGGTTGTGCTCATGGGTGCCGTTGAGGGGTACCGCATTGCTGGTGGTCCGCT
CGGCGAGATCGTCGACCCACTCTATCCTGGTGGCAGCTTTGACCCGCTTGGCCTGGCCGA
CGACCCCGAGGCATTTGCGGAGCTCAAGGTTAAGGAGATCAAGAATGGACGCCTTGCCAT
GTTCTCCATGTTTGGCTTTTTTGTGCAGGCCATTGTCACTGGCAAGGGCCCACTGGAGAA
CCTTGCAGACCACATTGTCGACCCTGTCAACAACAATGCGTGGGCATTCGCCACCAACTT
TGTGCCCGGGAAGTAAGACATGAGTGATGAATGCGAGTTGTATGTGAGTGTCACATGAGT
TGTAACACCAACATGTATATTATGAGAATTATGTGCGAAGAAATTGTTTGGTTTGTCCAC
ACTGGAGCTGCTCCTGCTCCCTGTCTTGTTTTCGCAAATCACTAAGCAGTCATTGGTAGT
CATTCCTAATAGAATATCCATAAGTTGTGATGACAAATACATCGTTATATGGATCCAACT
AACCCACTATAGACCACTAATTTTGCGTCTAAGATCACCCAACCTTCTCTTTTTTTTAGA
AAAGGAGGATATACCCCCGGCTTCTGCATCTCGATGATGCATGCATCCATTTTAACAATT
ATTCACAAATACCATAAAAGATAATACATCAGTTAGCCTGAAGCCACCATCTAGGCAACA
ACTGTTGCTACTCCTATCCCCTTGATGAAGGTGTGCCGATATCCGAGCCTAATACCAAAC
AGACATCGCACGAAACCCTAACATCTATAGCCGGATGTCCCAGCCCAGCCACATAACGGG
ACTGGGTCTCACACCGGACCGATGCCCTCTCGCTACCACCGCCATCTTCCAGCGGTCCAT
CTTCAGAGCAGGAACTGACGCATCGATCTTGCCTGGCCTGCCATTGACACCACCACGGCG
CCAGACAATGCCACCATCCTACACGCGTACATCCACACGCGTCCGTCGCCGAAACTCCGC
AGCGCCAATGCCGTCGTGATCTGTCTAATCCTCATACACCTCAAAAGACTTATGCCAAGA
ACAAAGGAATAGCTTTTACAGGATTTGGACATTGGCATGCATGGTCCTTAATGTGACACT
TGGACAATCAAATGTTTTTTAGTCATGGTTCTTCGTGTAAAGTATTTAAGTATGTTACAG
TACTCATGATAATTTAGTACTATCAATTTGATGTTAATTCTGTTGGAACCATAGTCGAAG
TGAAAATATTTGACTCGCTTAAATTCTGAAGTTACTTATTTTTGGGGTATAAGAGGAATA
TAGCAAAAAAATGAAGCAAAAATATAGTCGCTAAAATAATCACATGTCCTCAGTTATTCG
AACCAAAACTACTTCAAACGGCTGATGTTATTCAACGTGTACACCAAAATATGAAATGTC
TTACTAAGTGTCCCGTGGAACATAAAGAAAATGTGTTAATTATCTTACTAAGTGTCTCAT
GGAATGTAAAGACCAAATGCCTTTGTACTATGGAAATGTATTTTTATTAGTATTCCTTTA
ATTGTAGAGACAATTTTAGTTTCTGTGTGATATTCTCTTGTAGGAAAAGCAATAGGCATT
ATCACTTTTGAATTGTTAAAAAAACATCTAAGCAAAGCCATGTATATACTTTGTGGCACA
CATTGTCTTAGGAAACTGATATGTGCCACAGTGTGGCATGAACACATCACAGCTACGAAT
GGTAATTTATGGCAAGTCTCAGTTTTTTTACGTTTTTTTTGGATGAGAACTGTAGTTAAA
AAAAACGTTAGGCTGGAGTGCTTCGGGCCACCCGTGTGAAACTTATCATTAGGGTGGCCT
TAAGAATATGAGCATTAAAGAGTAAATATTTTTGTAAAATACAGTATTCTGTAATAATTG
TTTTTGCAGAGATTTCATTCTGTAATGATTTTCTAAAAAAAATCTATATTTATGACATGC
GAAAAAGTAAATTGTTTACTCTTACTTCTGCACATATTACAAATAGTCATGTTGTTTTGA
ACCTTCTAATCACAAGTTTGTCCTTCCAGAAACTTTGAGATATGCATGATAGGAAAACAA
AACTTTTTACTTTTATCTTTCCAAGAAATATTTCCGCCTTCCATAATGAAGATATATGCA
TTGTTACTGTTTCGGCAAACAATGTCTTTCAGCAAGCTTCCATCCACTGTTTCTAGCAAA
GTAAGAAGATTTGTTCTTTGTACGTAGTAACTTCTCTTCTTGCTTGCAAACCGTACAGTA
ATTTTATTTTGCTTATTAGCCGGTCTTACTAATATGTGATCCATTCCTAGACCTGCCAGT
CGTAGCCACAAGCTCATACAATCTCATTTCTTGGCTCTCGCTGTGCCATGTGTTCTGAGA
CAACGAGATCTATCCTGCACCAATGGCATCAAAGCTCCAGATTTTTCTCGCTATCTACCT
CTTATCTTGTCAGCATGCACACTAAACCAAACCCATATCCTATGTCACCTCCGCTGCCTT
AAATAAGCATCTCCTCCTCTTCTCCATCTCCACACTCACACCTCATTTGAAGAACAAACA
CATAAAACAGACATCTTAGCACTCCAATGGCGGCCACCACCATGTCCCTCTCCTCATCGA
CATTCGCAGGCAAAGCGGTGAAGAATGTCCCATCGTCAGCTCTCTTCGGCGAGGCCCGCG
TCACCATGCGCAAGACCACGGCAAAAGCTAAGCAGGTTTCCTCCGGCAGCCCATGGTACG
GAGCTGATCGCGTGCTCTACCTCGGCCCACTCTCTGGCGAGCCCCCAAGCTACCTCACCG
GTGAGTTCCCCGGTGACTACGGGTGGGACACGGCTGGACTCTCTGCTGACCCCGAGACCT
TCTCGAAGAACCGTGAGTTGGAGGTTATCCACTGCCGCTGGGCTATGCTTGGCGCACTGG
GTTGCGTGTTCCCTGAGTTGCTGGCCCGCAATGGTGTGAAGTTCGGCGAGGCTGTCTGGT
TCAAGGCCGGCTCCCAAATCTTCAACGAAGGTGGCCTCGACTACCTCGGCAACCC