Contig Data
morexGenes
Links



Map Locations of contig_273989 (3966 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_273989

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_44042 2 1613 bp MLOC_44042.2 Available Available LOC_Os03g11400.2, FRAME:+3, EVALUE:4e-122, 13103.m01287 protein targeting protein-related, putative, expressed





CDS Structure of MLOC_44042






Contig Sequence (3966 bp)

>contig_273989 3966 assembly3_WGSMorex_rbca.fasta
TGCTGCATAATACCACCGCATCCGATCGATGGTCGGAACTTGCCCGCCGCGCCGCCCGGG
CCGCCTACAAGGACCCCCGCCAACCCGAAGCCCGCCGCCGCCTCCGCCGTCTCCGCCTCC
GTCAGGAGGAAGCGCGGCACGCCCGCCCCGCCGCCGCCGGTCCCGCAGCGCCGGTTCCTC
GTGGCGAAGAAGGGCGCGCATCGTCGGAGGCAGGCCGGCGCGGGCGGTGGCGGGGGCGAC
TTCGACTTCGACAAGTGCCGCGAGGCCGCACGCGAGGCGCTGCGCGCGTCGCACGAGGAG
TTCTTCCTCAAGGAGCGCGCGCTGTCCGCGGCCAGCGAAGAGCAGGAGTCGCGGAAGAAG
GAGGGAGAGGACGATGAGGAAGCAAGCAGCGCCGCCGTTGTTGAGGAGGGGGAGGGAGCA
GATGTGGTGGATTTGGAGGGGAGCGGCAAGGTGAGAGCGATTCGGAGCAGGGTCATGGCC
AAGGCGATGAACAGCGTGCCAGATGCTGGGGCCGGCCGTGTCAAGCACCTGGTAAATGCT
TTCGAGAGCTTGCTCTCCATCTCCGGCGCTACCGCTGATGCCGAACGGGCAGGCGAGGAG
GCCTGGGTGCTGCCCGGGTTGCAGCCGTGGAAGGAGGGGAGTGAGGGCTCGCCGGTGGCG
TTGTTCTCCTCGTCCGATTTCACGAACATGGGGCCAACCAGGCTTTGCAGTTCACTCGAT
GGCAAGAGCAACAGGTTAGTTGATACCAGCAACCAAACGAGAGAAGTAATTGCATCTAAT
TCTAAGGTTGTTTCTGATCAAAGTTTGTTCTTCTATTCAGATCTAGCTGGGACAGCCAGA
CTGGAGGACGCAGGAGCCGGCGGAACGTAAGAATGCGATAGACCTTTTTTCTGCTCTACC
GTCGATCGTGTTTTGTCTCCACTCTCTAAATTCAATGTTTTATTTGCTCTTATCTGGCAG
TCATCTGAATCACTAAGGAGCAGCTGGAATAAAAAGCTCAAGGTCACTAGCCAACACCCT
TTCAAGCTGAGAACAGAGGTGAATAACAAAATCTTATGGCCGTGGTTCTGTTAATTAGTG
AGCAAGTCAATAGGTAGTAGATTCAGCATTCACCAGTCAAAATGATCTAAAATATTGCTA
TATTGCCTGATGCGCGAATTGTTTTATAACAGCAAAGGGGAAGAGCCAAAGAACAACAGT
TTATTCAGAAAGTACAGGAGATGCTGATTGAGGATGAGAAGAAGCGCATACATATTGCTC
AAGGACTTCCGTGGACAACAGATGAGCCTGAGGTTTGTCATTCTGCATAGGCTAATTTTC
TATAACAAAGCCTTGCACTTGCATGTTGTTTGGTATAACATACTAGTTCTTGGAGTTGAA
TAGCAAAAAGGACATAATGTCAAATTGATTAGCGAGACATTTGCTACTTGCAGACCTAAG
TATGACACATTTGAAGAATGCTGGTTACCTTTGGAATATAACAGTGAATCAAATTGATTA
GCGAGATATATTCGTGTGGTTTCATATACCATGGAAGGAAGATAAATATGTGCTACTTGC
AGACCTAAGCTTGTTGTTTGTGCATGCTGTGACTGTTCTTATGACAACATACTAGTTCTT
GGAGTTGAATAGCAAAAATGACATAATGTCAAAATTTAATATGATGTATTTGAAGAATGC
TGATTTTCTTTGAAATATAATTGATTATGAAGATAAATGTGTGCTGCTTCCAGATCGAAG
CTTGTTGTCTGTGCATGCTGTGACTGTTCTTATGGCAATGTACTAGTTCTTGTAATTGAA
TAGCAAAATGACATAATGTGCATGCTGTGACTGTTCTTATGGCAACATACTACCAATATA
ATTGACAGTCACAGCATGCATGCTGATTTTCTTCGAAATATAATTGATTATGAAGATAAA
TGTGTGCTGCTTCCAGATCGAAGCTTGTTGTCTGCGCATGCTGTGACTGTTCTTATGGCA
ATGTACTAGTTCTTGTAATTGAATAGCAAAATGACATAATGTCAAAATTATATAAAATAT
TTGAAGAATGCCGATTTTCTTTGGAATACAACAATGAACGAAATTGTTGGACATTGTGTC
CATGCTGATTTCCAGATCGAAGCTTGTTGTCTGTGCATGTTGTGACTGTTCTTATGGCAA
TGTACTAGTTCTTGTAATTTAATAGCAAAATGACATAATGTCAAAATTATATAAAATATT
TGAAGAATGCCGATTTTCTTTGGAATATAACAATGAACGAAATTGTGGGACATTGTGTCC
ATGCTGATAACTATGAGGCTGTTCTCCTGATTGTTCTTGAATTTATTTGCATAACTTTTG
TACCTGGTTTTCTTGAGAATAACTTTTGTACCTGGTTTTCAGTTAACAAGTGATATTGTT
TTAACTTTGAACCTCTATTTTCACTAGTGCTTGATTAAGCCACCAGTCAAGGAAAGGACT
GAGCCCGTCGACCTTGTTCTCCATAGTGATGTGCGCGCAATTGAACGTGCTGAATTTGAT
CAATATGTAAGCCTCCTTACAAGTTCATTGTACATTGTACACCACACATGGTTTGAAGTC
TTATTTCAGTGGTACTAGTGTGAGCCTTCTACTCTCTATTAACTATGCCTGTTTGAGATT
TAGGTTTCAGAGAGGCTCAAGATGGGTGAGGAATTAAGATTGGAGCGGGAGCGCCAAGAG
AAATTAGAGGAGGAAGAAATAATAAAGCAGCTGAGGAAAGAGCTTGTTCCTAAAGCACAG
CCAATGCCGTATTTCGATCGTCCATTCGTCCCCAAAAAGTAAACACCTGTGCTTTATTGG
AACTTGTATAGATGTTATTTCAATTTCTCTAAATCGTTGCAATAATGATTTGACATTACC
TGTTTAGGTTTCACTACTTGAGAGTTGTCCCTTTACAAGTAACTAACATTTCTTTCTATC
GTGCTTCTTTTAAGGTCATCAAAGACAATTACAATTCCGAAGGAGCCGAGCTTTCATCTC
CGGCCTGAAAGGTTATCATGGTGAGTTTTTACAGTTCAAGACTGGATGAACAAACGCTAT
AATTTGTGGCAATTGACTGCCAATGGATTCATCTTTACAGTTCAAGAGTGACTGAACAAA
CACTACAGTTAGTAACAATTAAACAACCAATGAATTCATCTTTTACCATGCTTGGTTATG
ATGCATGTTGTGTTATGTTATTCTCTGTACAAAGCATGCTCACCATGCTTGGTTATGTGA
ATGATGGCTGACAGTTACTATCGACAGTGATGCGTGGTCACTGGAAAGCTGAAGACATGG
CCCCGCAAGCAACACGAATGTCGGCTGCATCTAGCAAGAGCCGCAGAGCATCATCAACTC
CCATGATTAAGATGCTCCCCATTCTTTCAAGTGCCTAGCTTCTTGTTAATGTCTCCATGT
GCAACGAGCGGTCTATGTAGCTTGGGTGATCTCCGACTTTTGTTCTGTGTACATGCTTTA
TGAATATCAATAGCTCTGTGCTTCAGATGCATCCTCCACCCCCAGGGTTGAGACAGCTTG
TTGTACAAGAGACCCCAGATGGGAAATTCAAGGATGAATTTCTGTGTTCTTGTCTAAGTT
GATTGTCGAAAAACATGAAACACCAATGTGTTGATATATATGTGGATTTTGGAAAAGAAA
TCTCTTGCTGGATTTACTGTCAGTAGCGACCGAACTGAAAATAGTTTTGTGGCAAAGTGC
GCATGGTATGGATGGAATATGGATCAAGCTTATCTGTCATGTGGCGTACAGTAACTGTAT
GTCTATATCTCCGAGGGATTGAGATCAGATGCGTCAAAGAAAAAAAGAGATATTATTTTC
GAAAGAAAGAGAAAGTCGCTTTAAACACGACGAAAAATTCATTTTGTTTCTGGGTCAGAT
TCGGCAAACCAAGTCTCTGAGCTGCAACCCCACGCATACGTGGCCAAACGGGCCAGCCCG
GCCCGG