Contig Data
morexGenes
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Map Locations of contig_273693 (6580 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_273693

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_43982 1 1118 bp MLOC_43982.1 Available Available LOC_Os04g18790.1, FRAME:+1, EVALUE:1e-33, 13104.m01720 protein OsFBX126 - F-box domain containing protein, expressed
MLOC_43983 2 1994 bp MLOC_43983.1 Available Available LOC_Os02g10600.1, FRAME:-1, EVALUE:5e-146, 13102.m01183 protein OsFBA1 - F-box and FBA domain containing protein, expressed





CDS Structure of MLOC_43982






CDS Structure of MLOC_43983






Contig Sequence (6580 bp)

>contig_273693 6580 assembly3_WGSMorex_rbca.fasta
GGGGGCGCCTTCCACCCCTCCGACCCGCCCCACCCGGCCGCTGCGGCCGCGCGCGACGTC
GCACGGGCCGCGGACTTCTCCTTCGCGTTCCTCCCCGCGCCGCCCGACGCCGCCACGGGC
GCCGAGCGCCCCGGTTGGCTCGTCCGGGACTACCGCGACGGGCGCTTTCTCCTCGACCGG
GCGTCCTCCTGCTCCACCTTCGACAGCGCCATCGTCACGGATCTCGCCGTCTGCGACCCC
GTGTCCCGCCGCTACGTCCTGCTCCCGCCCATCCCGGAGGACCTCGCCGCCAGCGCATAC
AACCCGCTCGGCGTCCTCGGCGGCCGGCGCTGGTGCGAGCCCTTCCTCGCGCCGGCCGAC
GCCGAGGGGGGCAGGGACGAGGAGGAGGAGCCCTCGTTCGTGGTGATCTGGACGGCGCGG
TGCCCGAGGAAGGTCGTGGCGCTCGCCTTCTCGTCGTGGGACGGGCGGTGGCGCGCGCTC
CCGTCGCCGGACTGCTTCGTCTGAGGCGCCACCGGTCGCCCTTCTCCTGCCCGGTGCACG
CGGTCTGGAACCGGCGGCACTACGCGCACGGCCGCTTCTACTGGGCGGACTGCCTCACCA
ACCGCTGGCTGGTGCTCGACGTAGGCGCCATGGAGCTATCCGTGCAGGAGGTCCCGGCGC
CGGCCAGGTTCTGGGAGGAGAACGTCGCCGTCGTGGAAGGCGCGGACGGCGCGGTCGGCG
TGTTCGCGCACGACTTCTACCACGCCAACGGCAACGCCAGCCTCAGCTACTACACGATCC
CGCGCGACGCCGACGGCGCGGCGACGTCGTGGCGGCTCGAGAAGACGATCCCGCTGCCGT
GGTCGACGGCGCACGGGCGGCCGTTCTGCATTCGCGGCGCGGCCAACGGGTGCTTGATCA
TCGAAGTCAACCAAGACTCGCCGCAGCCGTTCATGTCGTCGAGCCACGACAGCCGGGACG
TCGAGCTGTTTAAGATCGACGTCGGGCGTCTAGAGCTGGAGAGAGTCTGCCGGGCGCGGT
GCTCCGGCGGCGTCAGCGACGGCTGGTGGCCGTACTTTGGCTTCCCGCCGTTGCTGAGCC
TGCCAACTGTTTGAGTGGCATCGCCAAATACCTCAGGAAATTCCGCAGCATCGCCATGTA
AGCCTCGAAGGAGTGTAGTGGTGTGGCACATGAATGTAACTGGAGGGGGCAGGTTGTATT
GGTTTTTGTGTATAAGCATTTTCAGAAATACAGTTACAGTGCAGGTGTACAGCAAACCGA
AACAAGTGTGCAGTATATGGCAGGTTCAGAGTTTTCATTTTTCAGCACAGCGCATAAATC
CTGACACACAGTATGAATTATTGGTCTTGGGCAGGGCATCATAACTTTCAGAAATGCAAC
GCAGGAATACATACGGTGCATTACAGCAACCCAGAACAATTATACAGTATAGCAGGTTCA
GAGTTCTCATTTTTATTTTCCAGTACAGCACATAAATCCCCATACGATAACAATGAAAAA
GCTACTGACATAGAGACTGTTCCAGTACACATTCTTATTTTCTTCTTATGTTCTACCCTG
TCCCAGACCCAACCCATGGTCTATTTCTTCAGCATCTCTACACAAACAAACACCAGTAAC
TTTATTGGATTGTAGGTACTAGCTTGAACCCGCTGTACAGAACAGACAACTATTCATGGA
TATGATGTCAGGGGTTTGCGGAGATCTATGCCAGCCTCCACTGCATGTTTATGTTGCTCT
TTATCTTCTTGAAAGATACCCGAGGGCCTGCTGAGGATGATCCGGCGCCACGAGCAGATG
GTCCACGCCCAGTTGGAAATGATCTAGCATCATGGGGACTTTGTAGCATTCTTCTGGAGT
CCACCAGGCCAGTCACAGAATGTAGAGCAAGGCTCTCCACGAAAATCCCAGCCGATATGA
TACACTCGCCAAAAGGCATGTTGAGGTAGGAACCGCTCCCGTCCTGAATATCAACGTAGT
AGAATCTTCTTTGGTTGCAATAGAAGAGCTTATTGTTGTGCAGGAAAAGCGGCCTCATGC
CCAAAGGAAGCAGAAAAGCGACGTTGCACATGTGGTCCCAGACTGCACAGGTCGAGTTCG
CCACCCAAATCTCTGAGGTTTTAGATGCTGATCCGTTACCGGGCATTGCCAGCAAATGAA
GCTTCCCTCCCCCCTCAAACAGGTGCAATTCACGGTCTTTTACAGCATCTGGGACAGCAA
TTTCTGAGAACATCTCATCTGTCAGGTTGAATGACAAGATGTTCCGAGTAAAATGGGAGG
ATATCTCATCAAGAAGTAGCCAATGCATGACATCATTAACAATGACCGCCTTTGTTGTCT
TCAGGAGGCCCGCGGATTCGCGCACTGCCCTCCATGACTGTGTGCCAACAGTGCATACTT
CAAACGTCAAGAACCGCACCCGGTGGTGGATACAGAGCACCTTGTACTCTTTTGTTGAAG
GCACAGGTCCAAGAAAATATTCTGAAGCTAGTGACTGGAGTTCTGAAACTGGCAGTCTCA
AATGTATCTTTGTTGTTGGATTCAACACCTCAACAGCGCCTTTTAAATCATAGGCGCACA
CCAAGCCGTGGCAGGGGTCTGACATCTGAAACCTACTCGACAACACGAGATCCATGCTTT
TGCAGTTCAGTGTGGTGGGATCAAATGTGTACATACAGACAAGACCCTCATCAACCGAGG
TGAAGCAAGCAATGGAGTGGTGGGAGCGGAGAGCATTGCTGAGGTGACGATCGACAAAAT
TGGGTTCTTGAATGCAGTCACGCCAGAATCTACACACTGCACGAAACTTGAGAACAACCC
TTGCAGGTAGTGAAGCAAGAATAGTGTGTTGGATATCCTGAGGAAGAGATACTTGGGCTT
GTACTGCTTCATTTTGCTCATCGTTGTTGTCTTCCATGGCTAGATTGCAAATTACAACAG
TGACCAGTACAACAGCAGAAAAGCATAGTCAGCAACAATGAAAACAACAAAAATGAAAAA
GCAGTTGGATTTGAATTATGCACAAGAAGTATGATATGTAAAAAAATAAACAGTATTTGT
CCACTTGACCATTAATTCAATAGCATCCAAGGTGAAAATAATTGTGCTACTGTTTCTACT
TGAAGCCAGAGTCACTCATAAACGAAAAAGTGGTTCAAGATGACCGAGCTTGGAGGTTCC
GCTTCTCTAATTTGAAGTGAAATACATAGTAATAACATTGGTATCTGCTGATTCTAGTTA
ATAAAAAAAAATTAGGTACAATAAGTGTGCTGAAACAAAAATAGGCAATAAGGCATGAAC
TAAACGATTCCACTCGTCCAGGAAAAAGACACCAGGTACATAATGTTACTTCATGTTTCA
TGAGAAGATTCGTACAAGCAAACATGATTGGCTTATAACAAAGATCATGCATAAAGTGTG
GTTTCAAAATCAATTAGTCTTATAGAAAGAGGACGCAGAAAAGGTGGGCAACTATCAAGA
GCGAATGACTTCTTCGGAACTGTATTTAAAAGGTCACACGAAAAGACAAGCACTTGTCAA
ATGTAAAATTGGAACCCAAGACTTTAATCATTTCAAGAATTTAAATGCCATAATAATGGA
TCTATAAAATTCGAGACTCGAGAAATTTCTGATGATTATTAAAATATTGTCTTCCTAACA
TAAGGGGGTCAAACAGAACGAAAATGTGAAGCTATACTGATGGAAGAGTCAGTGCCCTAA
TCAAGAGGGAGCTCAGTTGCAGCTTCATGTGCTAATTCTGGTATTAGTAGTTTGACCCAA
GTGATCTAGCTTCGGTTGCCAATACAACCAGTGGTCTAGCTAAATCTGATAATTTTTTCT
ATTTACTCAAAGTTCCACGCCAACAAAGGCCAGTAATAAGTTATAACTTTTCCTGATACT
ACCTTGGTCCGGATTTATTAGGCTCTCTCTTGGTTTGGGACAGAGTTTGACCATAAATTT
AACAAAAAATATGAACTATATGTCAAGAAAAACTATAGCGCATGAAACCTCTTCTGAATA
CAAATCTAATACAGTATACTTTTTGTAGCATATACTTTTATACTTTGTTAGTCACATGGA
TGGTCAAAGTGACCCAAAATACGATGAGGCCCAATAAACCTGGACGGAGGGAATACGTTG
CAGCAGCAGAACACATTTAAGGCAGCCTACGGAACAGCACGGCACAAGGTTTCATCCAAG
ATTACTTCCAGCTATGTGTGAAGGAGGAAAGAAACGGCATGTTTAACAGCAAGATAATTA
TTGACACACATGATTCGTAAGGAGTCAGAGAGCCAGACGAAACAAAACGCCTATGCAATT
TCCATCTACTTTATCTTCACGGCTTTGCTGTGCTCGTGGACCTCCTATGTGTCTAAATGT
TGTGTTTGTGCAAAGTTAGTTCAATTCCAGCGACGACATGACTACCCCAACGAGCCAAAC
ATCACGTCCGTAGCGACAAGAACTCGTGGCTCCGATAAGGCCCGGTAAGGAGCTAGAACT
CTATCCGTTGGATGGACTAAACTAAGAACATCAGCAAAACAACAAATTCGCAACAGATCC
AGTAACATGCGGATACAAGAACTGAAATGAATCCCAGACTAAGAGAAATAGATCGAACTC
GGGTATGGGTAGGGCTTACCACACGAAGAAACGAAATCTTTAGGCCGGGCGGATCTACGT
AGGGAATGATCAGGTGGAGGACTGGGAACGCGAGAAATGGAGATCCTCGGGGGGACGAGA
CAGAGCCAGACGGCGGAACACCACTGAGGCGGAGGAGGCAGAGGAGCTGCGGGTCGCGAT
CGGGCTTTGCTCGGTGGTACGATGAATGAATTGGTAAATGTAGAGCGGCGGTGTAATTGC
CAGATTTCGTTAGGAAAAAACCCTAATCTAGAGAGGAATTGGTTGAGCGGCGGCGGAGAA
GCGCGGAGTAGGTGCCGCCGGCGTCGGGTCGCGCCGTCGCCGCCCCTAGGAAATGCCGAC
GCGGGGGGAGCGCCGGCGCTGTTCACGACGGTGGCCGTGAGTCGGGGCTCTGGAGGCAAA
ATCGGAACAGCGAGGGGGCAAACATATGAAAGTGGGAGAAAAGGCTGATGGTGGTTCTGG
AAGAGAACTAAAAACGGGGTGCAGCCTATCTATGATTTCTACATTCTTGTTGGAAATCCA
GGAGGGAATGCTTGGCTTTCGAGTGCTCCGCGCACCCATATTTATATTGAAGGCTTTTGC
ATTATGATGATTACATTAAATTTGATAAATTGTTTGGTTGTAATACATGTCATTTAATAC
TTTGCTATATCCATCGATCGCTAGACCTATTCGGTTACTGCTAGCAAATTGCTACACATT
TTTTTGTATGTATGACAGCTAGTGAGAGGAGCGTTGAATATATGTCGACAAAAGAGGTTT
AAATAATTAAGTGGTCATTTTCTTGAGTAGAGGATTACAATCTAAACTAGGAGGGGACTT
TTCGGGTCTCACATGATCCATGTACTAATATTTGCATCGAAGATTCATGTGTTGAGATGG
TCAGATCAAATTCATTAAATTCAGAGTAAATTGTTTGATTGGAATACATATTTGTTTTAT
ACAATGATCTCTAGTCTATTATTGCCGATGAATTGGTACACCTTTCCCCTCTAAGTGACA
ACTACTACAAGGAGCTTTGACTATATGCAAACAAGAAATATATAAAGTAGTAATTAAGTT
TTGTTGTCGGTTAGAACGTTATTGGTATGTTTGATCCAAGTTTAACTAGTCATATGCGTT
GAAGGCTTCGGCCCAAAAGTTTAGAGGAGTTTGTACTCACCTACCATAGTCATACTCATC
TCCACAAGTTATAGTTCCTTCTTTGTGCTTCGCCATTTCATCTCACCATCAAGAACTACT
GTAAGAGCACAATTTATCCTAAGTAGTTTTGATGGTTGATGACGATGTCCCTTGCGGACT
AATCGTGTGCGTTAAACTTACAGAGAATTATCAGGTGGCACGAGACGACTTTTTCCCCCT
CAATGGTTGAAAGGGAAGGCGATGTTTAGCTATCGATTTAGTGTTGGCGGACTTGAGTCA
TAGGCAAACCCGTACTACCAAGAGGGGATCCGCGTATGGAAAGGTTGGGTGGAGCAAACT
CTCGCACACTCGCACCCCATCCAGCGGTACTGCCGCTCCCCAGGGTTGGCCACTCTTCCG
CTTATAATTTTACTCTCGTGTCTTCGGGGTCTTTTTCATTTTTGAGCGGAAGTACCGCTT
GGGGGACCTGTAGTACCGCTCCAGTGGTACTGCCGCCCTCCCCTATCGCTCCTTCTTCCG
CTTATTGATTTCTTCTGGTATCATTGGTTCCTCTCATCAACACTGAGCGGAAGTACCGCT
TGAAGCTGAGCGGTAGTACCTCTCAGGCGGAACTACTACCACCCCTCAGGCTGTGTTCTG
TCACCTATGATGGCCGACACTTCCGTGCAAGCGGAAGTACCGCCCCCTACACGGTATTAC
CGCTTAGTTGCGACTTTGGGCAGAATAACGGCCAGTCCCCCCCCCCTCACTATAAATAGA
GGTCTTCTTCCCTAAGGAGACTTCACCTTTTCCCTTTCCA