Contig Data
morexGenes
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Map Locations of contig_273254 (2596 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_273254

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_43888 3 1257 bp MLOC_43888.2 Available Available LOC_Os04g23440.1, FRAME:-1, EVALUE:7e-36, 13104.m02183 protein helix-loop-helix DNA-binding domain containing protein, expressed





CDS Structure of MLOC_43888






Contig Sequence (2596 bp)

>contig_273254 2596 assembly3_WGSMorex_rbca.fasta
GAGGGGAGAGGAGGGGAGGTGGGAGGGGGGAGAGGAAGGGGGAGGGGGGGGGGGGGGGAG
GGGGGGGAGGGGGGTTTAGTAAATTATAATAGATTTTATAAAATATGTTTTTCCCCCCCC
CCCCCCCCGGCAGCCCACCCCAAAAGGAAGGAAATCGAATTCCTATTATGCAAGATTCCT
AAGGCTACTCTTGCATCCAAATGCCGCAACGAGAAAAAATGTATATGAATAGTGTTCCTT
CACTCACTGGTGGAGCTAGGTACAAAATGCGCGCGCGCGCGCGTGTGTGTGTGTGGGGGG
GGGGGCAAAATAATACATGAGTGTTTTGGGGTGCAAAATGGTAAAACAAAATCTCATCTG
AAATCGAAAATGACCGCACGAAAGAGATGGGAGCAATCTTTTCGCTCATCGACTCGGGAG
ACGAACTAAAGAATAAATTAATTGGACGAAAAATACAGCAAATCACGGATGATTACCTCG
ATGAACATGGTGTGGACTGTGCGGCCATCAGCGACAGCGACACTTGAGGTGATAACCTTG
AGACAAAGTGAATCTAGCGCCTTGTACATCTTCGCCATGACGTGTTGGGTATTATTGTGC
CTCATGCTCACCACTGCCAGCTTCTCCTCTATGGGCGTCACCTCCAGCTGCAGACATGAT
AAACCACAAAATGTTTTGACATAATTTATATTTTGACATAGTCTTGTTCAATAGAGTTGC
CCCCAAAATGTTTCACATTTGCCATGTTGTCTTGGAAACATTTCGTTGTCTATGAAATGT
TTCACACACACACAAAATATCTGGATATGATTAAGCAAATATTTCGCTTTGCTAACAGTT
TACATAGCTGTTATACACAAGGTTTTTCATTTTTTTTTTCATCAGAAATATTGTCACCAG
ATTTACTTTTCCTGGACTTCTCCTATCAAATTATTTTAGGATCCCGATAAATTCCGTACG
TTCGGATTTTAAGCATGTTATTCCGAATGCTTTTTCATGACAACTTTAGTTAACGTGAGG
TGGCAACTTCAGTTGTTAAACACGACAACTTTGTTTCAATTTACTTTTTTTGACGGATAA
TTATCATGTTTGCCAACGTTCAAATTCTCATACTTCAAATTTGAACACTCAAAATTTATC
ATTTTCGTTCTTTTATATACCGAAGACCCGAAAGTTGCTAAGGTGGTGTTTTCTTTGCCC
AGGGACTAGACTAAAAAGTCCCTTTTAGTCCCTAGGTAAAGAAACATGAGAGACTTTTCC
TTAGGGGACTACAAAAAAACTATTGAAGGGACTTTTTTCTTTAGTCCCTGAGACTAAAAA
AAATCTAGTCCCTCGGAAAGAAACACCACCTAAGTACTCATCTTCTCCAGCGAGCAAAAT
TTACCTCAAAGATTTCGACCGGATGCGTGGCAGGTGAAGCGACGGCGTCGTTGATGGATG
AGGAGGAGCTAGTCCTCCGCATCTTCTTCCGCCGCGAGAAGCCAACGCCGGCGTTCTCCA
CCCCCTCGCTGCCCGTGGAGGCCTCCGACTTGACCACGGCGGTGCAGCCGCCGGCCTCGA
GGTCGGACACCTCGGCAAGGATCCGGCGCTCCTGCTCCTGCAGCTCCTCGATGTATGCGA
CGGCGTCCTGGATGATGGACGCCTTGTCCATCTAACGTCGCACAAATTAAGAGAAAAACA
CAATCAAATCGGACTGTTGGGGATGATTACGAAGTAGGCGCAATTCCTCTTCATGCGTGG
AGCAAACCTTGGTGATGTTTGGGACGACGCCGCGGATGGCGTAGAGCTTCTCGTTGAGCC
GCCTGCGCCGGTCCCTCTCCTCGACGACGTTCTTGCTCTCCCTGGTCGTCCTCGTCGACG
CCGTGGACGGCGAGCTGGTGGCGCCGTCCGGCGAGCCGGCGGAGTCGTTGAGGCAGGAGG
AGTCGAGGCCGGAGAGCGAGTCCTCGGCCGGCAGGTAGGAGCTGCAGCAATCAGCCAAGC
TAATCCAACGTTTGCTAGGCAAGGTAGACAGACGTCGTCAGCAATGATGGTTTGACGCAA
GATTGAGAAGAAGAGCGGTGATGGTTTCTTGAACCACTGTGCTCACCTCATCACGTACCT
GTCGGCGGCGGCGCTGCCGAGATCGAAGACGAGATGGGCCTCCAGCTCCAAGAAGTCCAA
GCTCGCGTCCATGTCGGCCTCCATTGCCCTGCTCATTCTGCTAGCTCGGCGCCTCTATCA
TCTCCTTCGAGGGTTTTGTTGTGCGCCATGGCCACCATGGCCGACGTGGCGAGCGAGAGC
ACCCTATCCTGGTGCCACCTGGCGCCCTACTGCATGGTAATTGGCTGCTTCTCCATTTCC
GGATTGCTCCCCCATATAAATGAAATTCGAGATGGAATCTGAATCTGTGCGCTGCTGTTG
TGCCATAAGTATCTCCGTATGTTTGGGGTCCATCAGCTTTGGCGCCTCGCAATAATTAAC
ACAGCGCCTCTCGCATATATAGATCCAAAATAATTCAGCCTCTTGCCCCATGTCAGCCTG
GGCGTTCGGGTATTTTTGTTATTTCGATTCGGGTAGTTCGGTTTATGGATAATTCGGGTA
TTCGAAAATGGGAACC