Contig Data
morexGenes
Links



Map Locations of contig_272652 (5904 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_272652

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_43780 7 1870 bp AK369925 Available Available None
MLOC_43781 2 817 bp MLOC_43781.1 Available Available LOC_Os02g58010.1, FRAME:-3, EVALUE:6e-11, 13102.m06714 protein conserved hypothetical protein





CDS Structure of MLOC_43780






CDS Structure of MLOC_43781






Contig Sequence (5904 bp)

>contig_272652 5904 assembly3_WGSMorex_rbca.fasta
CCGCGCGTCTGCGGGTGGGGGGCGGCGATGGAGGCGGGGGGGGGGGAGCTGAGGGCCGGG
GTGTCCGTCTACAAGCCGCGCTCCTACGAGGTGCTCGTCTCCGACGCCGCCCGCTCCCTC
GCCGCCGCCATCGACGACGGCAGGACCCGCCTCGAGATCGAGTTCCCGTACGCGCCCACC
CCCGGCCCGCTCCGCCGTCTCATCCCCCTCCCCTCCTCCTAATGCAACCCCGCGACTGTT
CTCACTCACACCCCCTTCCACGTTTCTTTCATGAACCTCCGCGGGTAATCGTTGGCGCGC
CAGGCCTCTGCCCAGCAGCATCTCCTCTTACAAGGTACTGACCGCACGCCCTTCCTCCCC
AACCCCTGCTCAAATCCCCTGCTGTGGAATGTTGCCATGTACTGTATTACTAGATACAGT
TTGATCCTAGTGAAAGATGCAAAGGAACTCAATCCATAGTTCCATACATAAGAATCTTGT
TATGTCACCCATGAAACTCGTTCAACCCAAAGTTTCCTGCTTTAACAACATTGTGGTCAT
CAATGGATACGAAATGACTAGCGATTGATGCACCCACCTCTAATATGTTCTTTCTCGCCT
CGCCAAGAAAAAATGCATGTTTTGGAAAATTGGAGCTTTATTACCCACCTCTACAATCTG
AGGATAAATTTAGAATCAATTCTATAATGTGCATCAGCGCTTTGTCATCATCGTGTCGTT
GGAGAGTCCGATTTGTTTATTTGCATCACATTTGACGCATTAATAAATTTTTACCATTAC
CGAAATGAAGGGGTCGATGTTAGACTGATGTTTGGCCTCTAGCTTCCTCTTGCTTTTGGA
GTTCTGATGACGCCGATTCACCTCTTTTTCTCTAGGGCTCTTCGGACGAGTTCATCGATG
CCAACGTCCAGCTCGCTCTCGCTGTTGTAAGGGACCTCAAGAAGCTCAAGGGGACTCGGT
CCTGCATAGTAAGTTCAAGCTCCATGCTTCACCCTTTGTCCTCCAGGTTTGTTCCCGAGT
GCAGAACCATACTCATCCGTTCTCTTCTAGTCCATTCCAGGTGTTTCCTGATCAACCAGA
GAAGCGAAGGGCCGCGCAGATATTCAAAACGGCTATAGATCAGGTAATTTGCACCTCACA
ACATTGCATTCTCCCAGTGGCTTCATGGGTGACTAAGTGATGGGTTGGTTTTCTCTTGGC
ACTTCTTTTAGATCGAGGGTATATCAATCGGTTCATTGGATGATCTGCCCACCGGGCCTG
TCGATACCTTCTTCAAATCGATAAGAATTACCCTTGATTTCGATTTTTCTGATGACAACG
AAGGTAAGATCTGAGGAAGCCCTGTCTAATATGGTGACACCAAAAACACCAATTTCCTTT
GCTCCGGGGAGCTGCTGGTGCTAATGAATCTGCTGACTGTACTGAAAATTACATTTTTTT
ATGCCCCTTCTCTGCATTGATGTTTGCTCTATACTGGACCTAACTGAATCTTGCCGAGCG
CTTTGTAGCAGGCTGAATAACGTTGATATGCTAACATCTTTTTGTGTAGTTCCCTAGTTG
GCAAAATATTTTCATGTTAATTTATCATCAGTTCAAAGAGTGGAAATAAAAGGATAACTG
AACATGAGCAGGATGTGTGTGTGAAGCAAGCTGTTATGATACTATTATTAATCTGAGCAG
AAATTGTGTAACTGTCATAACAGCCAGCCATCAGTTTTTTTTTTCTGAAAGCCAACCATC
AGTAAATTTGAGCCTTATTACTGTGAGAGAATCCTCACATAAACATCGCTGGAGATATCA
AATATTGCTCGTAACTTGATGTGCTAGTGTGCTTACAGATCGATGGAAGTCTGACGAACC
ACCACAACTATATATCTTTATCAACAGCAGCACACGTGACCTTGCATCTATAGAGAAGTA
TGTGGTATGTCTGGAATAATGCTTTTGTATCTCCCCTCTAAAAAAACTGCTTTTGTATGT
CGCTGATATTTATGTATACTTTTTTGGCGATGGCTAGCTTATATTGCTGTGCTAAAATTG
AGTTCCAAATCATTTTCCTCCGCTGTGCATATTTTATTACCCTGCCATTAAAAATGATCA
CACCTTGAGCTTGATGCAATATCAGGATGAGTAAGATATGAGAAAGATAGGTGGGGAAAT
GCCTTAAGCATCAATATGTGCATTATTATTTTCTTTATGAAATGCCTGGCTGAGAATGGG
AGCCATTTAAGCAACTGCAAGAGAACATGAATCAATAATTTTCAGTGATTCTCTACTACA
CTTTTGCTTCGGTACAACCCCCCTCCCCCACAAAACGTATAAAGGAGAATGTATATCAAC
CTCGTATTGTACACTATAGGCCGCCATACGTATATCCACCTCATATAGTATACGTATGAC
GGCCTATAGTGTATAATACGAGGTGGGTATACATTCTCCTTTATACGTTTTGTGGGGGAG
GGGGGTTGTACCGAAGCACACCTCTTCTCTACTATTGTAGCACTGGAGCAAAAAATGTTT
ACTTCAACTTTGTTTATAGAAGTTCTGGTTTTTGTTTGCATTTTTTGTTGATTCGTCCTA
TGTGCATTCCTTCTTGTCCAGGACCAATTTGCTGCCTCTGTACCTGCTGTTCTCTTTAAC
CTTGAACTAGATACCTTGCGGTATGTCTCTGTATTCTGGTTGATACTCTGTTCCTTATAA
GCATTTTGAGTGCCTTAAGCGATAACATACGACCTTTAACCTCCAGTTCTGACTTGGGGC
TTCTGGGATTCCCCCCAAAAGATTTGCATTACCGGTTTCTTTCTCAGTTCACCCCAGTAT
TTTATATCAGACAGCGTGACTACTCCAAGGTATCCATCTATTTGTCTTTTACGTGCATAA
CCATCATTTGTGTTTCTGTCTGTAACTACATTTTTCACTTTACTATATAGACAATTGCAG
TTACTCCATACATAGTGAACTACAGTGGCGCTGTCTTCCGTCAATACCCAGGTAGCACAT
GGTTTGTAGTCCTCGCCATTAGCAGTACTAAGTTGTTATTTCCATGTCTTTCTTCACCTT
AAAAGGTGATAATATATTAATATCCATACATGTATTTGTATCCTTCAATTCATCATGTTG
TAACATACAATTGGTTGATATTGCATCACCAATAGCTACTGATCTATAAATTTCTGTCTG
TTCAGGGCCCTGGCAAGTCATGCTTAAGCAGGCTGATGGTTCCTATGCATGTGTTGCGGA
GAGTGCATCTCGGTTCACCTTGGGGCAGGTCATTAACAGTACATCATTTGCGTGCATTAT
AGTTATTATTTTGGCAGAATGTTTGGAATATGACGTGCCATTTCATTTATTTAGGCCAAG
GATGAACTATTGAGAGTTCTCGGTTTGCAAGAAGAGGTCGGAAGCCAGCTTGAATTCCTC
AGAAGAGGATACAAGGTATGCAATCTCATCTCGCTTACTAGTTGATAGGATTAAATGCAT
TTCAAATTTTCATTGTAATGAAAATTGAAACGCTGTATCCGGATCAGTGGTCTCAGGCAA
TTAATTTGACATGATCACGTGTTCTGTGAAGTCAGTTCGAAAATCTAAACCTTTTTATGG
TACCGGCATGCTTGTAATGTTTTGCCTTCTTAACTAAATTGCATGCTTAAAATGCAATCT
TGAACATCTGCATTCTTCAGAGCATCACTTTTACAAGCTGAGAATGAGATCCTTTCATGC
AGAATGCTACTTGGTGGGAAGAAAATTTTGATCAGGAGAAATCACCCGCATGGCGAACTT
GAGAGGCAGCTGCTGGTTCAGCGCCGAATTGCCGACCCGACTTACAAATGGAGATATATA
GGCCAAAAAAAAATGTTCATAAAGGTCCCCTGGAAACAGAGTGTTCACGAACCCTGAGCT
GATGGCGCAAAAGAAGCCCACACACCAATATTGTAGTCATGCAGTGGAGACACTGATATG
AATTATGGGAGGAAATTGTCCTTGCCTTTTTTTTTGCTGATTAGTTATGTGCTGAGTATG
TACAAGTGAAATGCATGTGACTCTAATATCCCAGCAAACTGATTTTGAGTATTTCACAAA
AGTTTGCCAAGCCGGATAAAGTGCTGACCGAATGGTGAAAATCAAGAGCTGTTACCAAAT
GTAAGGCCCGCGGCCATTGCAGGCAGATTGTTGAACAAATAGATTGAGGAAAAGATGTGG
TTCAACTATGGTGAAAAGGAACTTGGGATGGAGAAACTATTACTATGGGCGAACCCATTT
TATCTCCACCAACCCGAAACTCATTATCCTCGTAGAAACATAATCTGAAACTAATAAATT
CCAGGTTCCAGCTATGTGGCACAACAATCAGAAACATGTGCGCTAGCTCAACACTCCACG
GCTTTGACGAAACCATGCCAGACAAATGTGGGACATGATCCATATGACCGCCTTGGAATA
AAACTATAGACGATTCACGAATAGACGGTGCAAAATCACAGACCAGTCTGCCGTCTGAAT
TGTGCATGAACAATGCGGGGCCGGATTTCTTGAAAGCCTCACACATAACACAATTACATA
ACAGCAAAGACGAATCACAAGAAAACACAAAAAGAAACAACCTAATCAAAAAGGAGCAGA
TCACGCGAGATGATCAACCCCGATCGTCACATCTTGGCGAAGGAGGCGGAGGACCCCGTC
CGGTCGTAGTAGTACTCGGGGAGGGCCTGGGGGCGGGAGAGCATGAGGGGCCGGTCCTTG
GCCTCCTCGGGATCGTCGCAATCGTCGTCGTCCATGGTGTGGAGGTGGATGCATGAGCAC
CGCTCCATGGAGATGAAGAAGGCCGCCGCCACGCTCGCGCCCACCCACACCGCGTACCCC
TCCAGCTTCTCGTACGACATGACTCCGCCGCTGACGCTGACTCTGTTCATGGCTGCTGTC
CAATCCAACGAAGGCCGGAAGCCCGGAAGGAAGGGAAGAGGGGGGAATTGGAGTTGGATC
GGTGGCTAATCCCCACTTCGTCTCCGGATTTTTGTTTCGGGCTGTTCTGGTTGTGTGGCT
AAGTTAGGAGGGAGGAGAGGGAAGAAGAAGACTATCTGCGTCCCAGCGGGGCACTGGGAG
GTGACAGGTGGACGCATGCAGAGGTGCCCGTTTCCTTGGCCCTTACTAGTCTTCAAATGG
TACACAATGTTGGTTACAGCAGGTTCAGCGAAACCAATGGATGAAATGAAGGACAAGTTT
TTCTGCAAGGAGTGAACATTTCTTTTCCAGTTTAAGATCCAAGTGTAATATGTAGTTGGA
CGTATGAACCTAAGATGTAACTACATATATATTGGTAAAGTTGTACTACTCTGCATTCAG
GATTGTTGTGTGTTTAAAGACGCCTTTCATGTTTGGAAGCAGGCTTTTACTTGATATTCA
TGATCCAGCTCCCCAAGTATAAGATGAAGCATCATTTGTTGTTTGGAGCTGGGGCTTATG
ATTCGGCTGATATTTATTTTGTGAAGAATTACCTATGCACTTATAACTTAATTAAACAAA
CTCGAGTAAATGGCGCATGCATCACCATGCAATTAAATTGCATCAAAAAATTCAAAAACA
TCTGATTTTTATTTTGGATGCTTGTGTTAGTGTTGCAAGCATGCTTGACAATTTTCATGT
GAAACAGAGCAGTAGTTTTTCGTCGATGGAAAAAACAAATTTGGGGTAACATTTGATGTT
TAATTTGTTTTTTTTTTCACTGGCAAAAATGTTTAATCTTTTTGACTAAAACTTTACATT
TAGTCAATGCCCAACCCAGCCCCCGTGGGCTCATTTAGAGCAAGTACAATAGTATAGCNN
NNNNNNNNNNATAAGCCATTGTCATGTCATCTATAGACCATCTTATAGCCAACATGTACA
ATAGTTCATTGCAAAAATATACTA