Contig Data
morexGenes
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Map Locations of contig_272435 (9044 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_272435

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_43743 1 1318 bp MLOC_43743.1 Available Available LOC_Os04g43922.1, FRAME:-2, EVALUE:0.0, 13104.m04372 protein exosome complex exonuclease rrp4, putative, expressed





CDS Structure of MLOC_43743






Contig Sequence (9044 bp)

>contig_272435 9044 assembly3_WGSMorex_rbca.fasta
AGGCTCAAAACTAGTTTGAGGGTTGGACCTCTAAAAATATTTACGGGTTTAAGGGTTCTA
GTCTACGCCGTTTTTCGGACGAAAACTGTAAAAAAAACGGTTATTTTTAAGGGTTTGGAG
GTTTGAGGGCTCTACTAGACTTGCTCTGAGGCAACAAGGAACAAGATCCAGAGCTAGTTT
AGTTTCAGGCAGTAGGACACACGTATACTCTCTCTGTACCTAAATAATCATAGTTGGAAA
GAATTAGTCTAGTTCTTCTTAACTATAATTATTTAGGTAAACAGAAAGTAGAAATGAAGA
AGTACAGAGAGGAGCAACGCACTGCGCCATGTCTCCGAGCCCACAAGGCCAGCCATGGCG
GCACGCTGTAGGACGCCGGTTTTGTGCAGATTGGTGCTGTTGATGGTGACCTTTGCCTTG
ACAGTGGCATCACTTTATTGAATCTTCTCAATGTCTCAATGAATTGCGCTTGCGTGCGGC
GTTGTAGGTGTACTCAATGATCAAAGTGGCTAACGACACACAACGCCACGTCACAAGCTC
AAACCAGAAACCATCTCAAATCAGCAGCAAAACCACCCGACGGAAACATTTATCTGGTTT
TGGGGTCAAAATCATACCAAAACGGACATCAGGAGGGTATTCGTCCATCGGGCCACATTT
GGGGGGAGAAAAATGAACTTCTTTCAAGCCTAGAAGAAGACGGCCCACACTAGAAGCGCA
CGCTGGCCTACGAGCCTAGGCCAGGGCTTTAGACAAGCCTCAAAAAAATAGTTCAGGGCA
GTAGACACTTAGGCCTTGTACAATGCAAGATGCTTAGAGAAATAAGCCAGGCTTTTTTTA
AACACCCGTGCTTATTTGTACAGGGTAGACGCTTAGTTAGGCGTCTTTCGCACTGATGCT
TTAGAAAAATCTGGTTTATTTTTCTAAGCACCTCCCTATGCACCTAGCATTGTACAAGCC
CTTACAGTCCTTGTCTGGCTTGGTTTAGGTTACCAAGCAGCACTATAACACCATGAAAAT
CTCAACAACAAAAAACAGAAATAGAAGTTAAAAAAATACTGAATGGACCTAAGAAAACAA
GTCGAGCACACAACAAAAGAACATGTTATATGCCAAAGCTCCATCGACGGAAATAATGGC
TATCTTAATACCATCCTAAAACACATACACACCAGAGTGGGGCAAGCTCCAAAATGTCAT
AATCGTATGCTACAGGGGCACCGAGTGGCATTACCTCCTTTTACATATCTCGTACATGTC
GGCACTTTCAGTTTACAGCACGCCAGGCAGGCAGGGCCAATAGGATTTACCTCTTCTTTC
CCAATAGGTCACCTCGACGCTTAGCTTCTCTCTCCGCTGTCTGAACGTAAAATTCAGCCC
CAAGCATGTCGTTTATCTCAACATTTGATGATATGCTCGCTTCCGCGGTCTGAATTATCA
GCTCGACGGTCAGAGTGAATCCCAGGGCTGAAAGCACACGCACAGCATTGGCAAGACGGC
AGATGTGTCTTCTTGTTTCTATTGGGGTAAAAGTCTCGGCTTCGGCGCTCAGCTTCTGTT
CATCTTCCTTCAAATCAGCAATTTCACGCACCACGACGTGCTCACCGACCCAGATGAAAC
CGTTGCAGCCAAGGATCAGGTCCACGTCATACTGCTCGAGATGGTGGAAATGCAGCTTCC
GGCGTTTTACCAGATATGCAGGCACAGTGAGCAATTGACCTCTCTGAAGCTGCATAAAGA
AAATCCAGCAGCCAATAATAAGTTAACACATTAACATCATCTCAGTTCTGAAAGGATGAG
ATTGTAACTCCAACAGTCAAACATAAATCATCAACCAACCTAAGTCATTATCAACAATAC
AAAAAATATGAGGTATAAGGACTTAGCGACATGTCTATGAACTAGTAGTACATTTACTTG
CTCTGCATTACTGACAGGGTAATTAACATCAACTGGTATGCGCCTCTTTTGGTGCATAGG
ACGAATATCATAGGAATAGGAAACTTGTAGGATATGAGGTGCCATGTATCTCAAATCCTA
TGACTAGGATCTAGGAATAGAAAAAGAGATGTCCTTTGGTCCACATCATAGAATCTTTTC
CATTGAATCTAGGCTAATGTTTATTTTTCTTTGAAATGTGATGGATAGGAATAATTCCTC
TGTAGGAATAGGATTTTATTCATACAAACCACAGGACTCTATAGGAATTTTTCCTATAGG
AATCCTATCCTATAGAATTCCTACAAAATTCCTCCAAACCAAGAGCTAGCAGATTTTTTT
TCCCTGAGAGCAATGGCAAGAGCTCTACTATATATTAAATAAGTTTAAAATAATTACAAG
AGCCAGATTTCACAATATTGTATAACTACACTAGGGGCATTTGAAAGTAACAGAAATTAT
CTCATAGAATGGAAGCTTAACATCATAACCTAAACTGGTAGGGCACTGGCAATAATAGTA
GCTGACAAAGAGTTGGTCTAGCATCTACCTTTCCATATTTTTGACTCCTTGCTTGTAGAT
GAAGAGATCCATCATGTTGGAAACCACGAACTTCAGCCTGATAAATGATTTCATGCAAAG
CAGCAGCATCAGATTTTGCAGTGCTGATCCAGTACAAAAGCAATAAAGGCTGACAAACTA
TAAAAAATGATAAAGGACATAGACAAGCCATGTTTCCAATATCATGAGCTTCCTTTGGGG
GAAACACTAAAATGAAATGTACAAATAACGTGAAGCTTGGATGCATGAATAAACTGAAGG
CAAGGAAATACAGAATGCCTAATTCAGAAAGTCTTGTGTGTCAGAAAACAGAATGCCTTG
ATTAGCAAAGCGATCAGAGAACAAGTTCACAAAATGCAGAGCAAAAATGTTCACACGTGA
ACTTTGTGCTGTACTAACTAATCCTGGTAGTCCATTAACCAGATACAGGAAACTTAAATA
AACCCAGCATGGTGCATACAGCCAAATATAGACAGCTTATGTCTCAAATTTCATAACTAA
ACAATCAAATTAATTTTGTATGTTGAACAGTCAGATTAATTCCAGCATCACACGAGACCA
ACAGAATAGTCCAACGGTATAACCAATGAGGATTCACAATCACCAGTTATCAAAGATTAG
GCATATAAGTAGCATGAAAAGTCCTACACAGCGAGGCGACTTGCAATCAGCTGGGAGCCT
TGGATAGAGATGCAACTATCCATACTCTTTTTGCCGCCCTTGAAACTCTCCAGGTAGCTC
TTGATATGGTCCTCCAAAGTATTGTGCACGTATTGTGGAAAAGCGTCTAGATAAATTGAT
GTGAGGTACAAGGTGGAATGGGAAGGGCTGAAGCGTGTTATTTTGATGCCTACGGTGCTG
AAAATAAGGACTTACGCTTTCTGGTCTTAGTTATTTTGATGCCTGGTACAATGGGAAGGG
CTGAAGCCTGTTGTGCCCAGTCAAGCTTCGCTTAAGTTAAAAAACTGAAATGCCATGGTA
GATGGCGCAAAACTTTGTGTGCTCTGTGCCCCAATATTAGGGTTTGTTTTTTCGAAGCTC
TGTGGTTGTGTTGGCTCCCAGGGTGCGAGGTCGGTTCTGTTCTAGCAGTTAGCAAAGGAC
CAAAGTTAATTCCACTGTCATGATTTCTCATATCCTATTCACTGTGCATTGTTTCTATTT
TCCATCTCCAATTTCTAGTCCATGCAACACTTGATTCACTTCTGTTCCATCTGTTTACTA
CCATCAGTTCCAATGTGCTATTACTTTATAATTTTCATCTATTTTCTTATATTTTACATC
TATTAGTTCCTCCACAGCTACACATATTGGTTACCATATGCTTCTGCAAGTTCCTACCAC
TTAGTCATAAACAATTATATTGGTCCATTCTGTTCCAAGATTCCTTCTATCTTCTAGTTC
TAGCCAGTAGCCAAATCCATCTACTAATTTGCTGCTGCTTGCAAAGTGAAAGATCAGGGC
TTCCAAAAGTCTCATATGCAATTTGAGTCGTACCAATTCTGAATTAAAACGGGAACAATC
ACTGATCAAATGGTGTAGCAGTGAGAATGAGGGCTCAACCTGATGTCAATGGCAAGATGG
CAAACAGAAGCAAAAGAAAAAGCTCCAGGACTAATAAATGCAATTGCAGAAATATGACAA
GCTGAACCATTTGACAGTATTGTTCATTCGTATTTGACGTTACATATGTAAGCAACTAAC
ACAAATTTTCATTCATAGAGAAGGGGAAAGGAGTGTGATGCTTACGCAGACAACATCATT
TTCTTCAAATATACTCCGCATATTAAGCTCATCAACCGCAGTTCTTCTTCTCTAATATTG
GGATGGAAAAAATATCAATTAAAAAATATTGGAGAATGATCAATAGTGACACTTGTAACG
TACTCCCTCCCTCAGTTTCATAACATAAGATGCATTATGAAAATCTTTAAGACAAGGGTT
TGACCAACAATTACTCAAGACAAGGGTTTGACCAACAATTACTCTATTAATATGTAATTG
TGATACAAAATTATAATGATGGGTACTTTTGAAACAAATCTAGTGATATAACATTTATCT
CACCCAAAGTGTATCTTAATAGACTAATTGTTAGTCATTGTTAGTCAAACCCTTGCTTAG
CAAATCATAATGCACCATACATAAGGAAAATAACGGAGTACTAAAGATGACAGTCACTGG
TCTGTTTTAGCATGATGCAACATTTCGTTCTAAGATAAGAGAAAAACAGGGAAATATTTT
TTCCAGCAAACCAGGCAATTCCATCTTAGCTTACTGTTAAGTCAACTAGAAAGGGTATTT
TGATGCATGTTAAATTATCTGTTGAGATAGTGCATGGGATTATTTGCCTTGCAGATTGCA
TTGTGAGGATACCCTATGTACAGCTGCTGCCCTTTCCCACAAATTTTGGGCGTTCACACG
GTAAAGGTGCAGAATAGCATACCTGAATTCCATCAGGCAAATTCATTGAAGAAAGCATCA
AAACAGCATCTTGGCTAAAGTTTATCTCCAACCGCCAGCGCTTTGGAGCAATCTTGAAAA
AAAATCAACATAGTATCTGATATTTATCAGAAATAAAATACATTATTTACATGGGAGCTG
GGCAGGCAGATAATAAATCACACTCTGACAGCATGACTATACTAACAGCTAGATTTGCCC
ACACCATCCGGTTGTTCAGATGGACAAGTAATCAAAAATAAATAACATGTACCAGGACAC
ATACAAATTATTGGAGCTACTAAGCTACCAAATATAGGGGAAACCAATTGCTCAATCCAT
GCATGTGCTATAAGGATCCGGCAAAACACATTTCCAATTTTTAACAGTGACCAACAATAC
TCTTAGTTTAAAACTCGAGCCATAAGCCAAATTGTAGATCATTGGCATGCATTCCTGGCA
CAAACCATGCCATAGAAATAAGAACGTTGAAAGAGTGACAAAAAGTGCGCAAACCTCAAT
GACACGGCCAACTATGATATCGCCAACCTCTGGCTTATACCTGGTAAGGTGGAAGAGAAC
AAAATGAGCCTTTCAGGTAGCAGAACTAATTACAAACTCAATGATTTATTCCCTGCTCTA
TAAGTCAAATAATATAACATGCTAGAGCCCAGATACCTACAGTTTAAGTCGGCACAAATC
ATAAGCACCCCAGCTCTAATCTGATACAAGATAATATTTCAGTATGAAACAACAGTACCT
CACTGCAAGAACTGCACTTATCCATTCATCGAGTCAAACCCGAACACTAATCCATTCATA
TGCACACCGTTATACTCAGTACGATAGCAACGCCACAGCATTGCGAGGATTATCCAGCAG
GAACACAGAAATGGCATCGCTGGAAACTGACACAGCAGGGAAGAGGGGGGAGGCAGGGGA
GTAATACCTCGCCCGGAGCGTCCGCACGTAGACGAGCTTGTTGACCCGCTCCACCACGCC
GCACAGCGTCGCCACCACCTCCCCATCCTGATCCGTCGTGCCGTGCCCTCTGCACCCAAA
AATATCAATCCGTCGTCCATCACCAAGCACGAGTGGGGAACGGATAGAGAGGGGAGGAGA
CGGGGAAGTATTACTTGAGGATGTTGTCCTCGTGGTTGACGGCGATGTTGTCCGCGACGG
TGACGGCGGCGGCGGACGCGGCCGCGGGGGCGAGGGTCTGGAGCTCGTGGAGCGCGGCCT
CGAGGCGGACCCTCTGGGTCTGGTTCAGCGGGAGGTGGAGGTCTCTCATGGCCCCTACGC
TGTGCCGGGAGCACTTAAGGAGAAGGAGGGATGCGTCGGCGGGTGGCGGGGGTCGGCGGC
GATCGACGGCGGAAACTAGCAAAAACCCTAGTAAAACCTGCCCAGTCCACCCACCACCGT
CGCGCTGAAAAGCCGCTAGGTTGAGCCGGGCCGGGAACATGGAACCAAACTGGGCCTCAT
CGTTCGGGGCTAAGCTGGGCCAGTGACCTAAGGATATCCTTCGACTGGGGAAAGGCAAAT
CCGATTTGGCGCTGCAGGCGCCGGTTGAAGTGCATTTTTCTTAACCGGCGCCTGCAGCGT
TCAATCATGGGCCGGCCCAGCGGAAGGGAGGTTTTTCTGGTTTTATGAAGTTTCCGGTAG
CTTTCTAGATGGGATTTTTCATTTAGGTTTTTTAGGACTGGTTTTTCTTCAGTTTTTTTG
TTTTTATATATTTCTTTTCTATACTATTTTTATTAATTTTTTATTTTAATTTTATTTTCT
AAATAAATTTACATTTTTTCAACAAGACGCACACTTTTTTTTATTAACTTTTTCTCAAGC
GAACAAACATTTTTCTAAATCAATAAACCCTTTTCAAAATTTTATATTTTTTTAACTAAA
TTCTATGAACTTTTTTGAATATCGATGAAGTTTTTTTTTATGGATAAACTTTTTTCAAAA
AAGATGAACTTCTTAAAGATTTGTGAATTTTTTCTAGGTTTCATGAACTTTTTAAAAGCT
TTTTTCAAATCCATGAACAAAGTATCAAAATCCATGAACTTTTTAAAATTTTGTGAACTT
TTTTTCAGATTACAGTGATTTTTTTCAAATTCATGTTCTTTCAAAATTTGTGAACCACTT
TTTGCTTTTATGAACTTTTTGTGTTCACTTTATTTTTGGGTTTTTTACAAAAAATTCGCC
TTGTAACTGGGCCGGCCCATTTTGCAACTCCTGTTCGGTGTCTTAAGCGCCCGAACAGCT
ACCTCGCATCCACGCGAACCACCTGATGGGCCAACCCAGGAACCCGCGTCAAAGGGACGT
AGAATAGGTCGAAAACAACATAAAAAGGTAGGCCATTGCCAAGATTCGAACTCAAGTCTT
TAGGTGCAAGAGAAGATCAATTAACCACTACACCAACTAGAGTATTGGGATCGCTAGTAG
CTCCAACTTTATAAGAACAACGGGGTAGTGCTATTTTGTCTAGTCTATCACTTAGTTTTT
TTTACGTATTTGAATAAAAAATGTAAATTTAAAAATACTCATATTTTTTTAAGGAAAGAT
CACAAACTTGAAAAAAGTTCATCGAATTTGAGAAAAGTTCATCGATTTCAAAAAAAGTTC
ATCGAATTTGAGAAAAGTTCATCAATTTCAAAAAAAATCATCGAATTTGAGAAAAGTTCA
TGAATTTTGAAAAACTTTCATTAAATTCGAAAAAAGTTCATCAATTTTGAAAATTGTTCA
TTGAATTTGAAAAAAGTTCAGCAGATTTCAAAAAAAAGTTTATCGTTTTTTTAAAAAAAA
GTTCATCAAATGTGAAAAAACTTCACCAATTTGAAAAAAGTTCAGCGCATTTCAAAGAAA
AGTTCATCGATTTTAAACAAATGTTCATCGAATCTGAAAAAAGTTCATCAATTTGAAAAG
GTTTAGTGGATTTTTAAAAAAGTTCATCAACTTGTTTCTAAAAATTTCAACAAATTGTCA
GAAAAAGTTCATTGGATTTGAAAAAGGTTCACTGAATTTTGAAAAAGTTCATCAAATAGT
TCACCATTTCGAAAAAAAAGTTCCCAAATTTAAAGGAAAAAATCATCAATCTTGAAAAAA
GTTCATTGGATTTGAAAATGTTCATCAAATTTGAAAACAAAGTTTATGAAATTTGAAAAA
AGTTCATTGATTTAAGAAAAAGTTCGACAATTTTTAAAAATTGTGGATGGATTAAAAAGA
ATAAACGATTGATAAAGAAGGAAAATTAAAAAGAAAACAAAAACGAAAACAGAAAACAGA
AAAAAAGGAAAAAGAGAATGAAAAAGCAAGAAAGCGGAAGAAACGATGATAAGGAAAAAC
AATTACGTATCTAAGCACATCAGCTGTCCGTGGCCTGGTGGTTACTACTCTTCGCACTGG
ACCAGGAGCTCCTTGGTTCGAATCCTACTACATTCTAATTCTTGAATGGACACGCGAATG
TAAATGGGGAGCTTCGAATCCTACTACATTCTAATTTTTGAATGGACACGCGAATGTAAA
TGGGCCGAGCCCAGTTAGCGTGGTTGTAGGCGCCGGTTAGCTGAATACGAAAGAAACCGG
CGCTGAATAGGAAATGCCGACTAGGAGTCCCTTTGGGGAAACCTATTTCATGTCGCTAGT
TAGAGAACAACTAACTGTACGTTTACCCCTTACGGTCACCTTCAAGGGGTGGAGCCATCC
CATACCCTTAACCGTCGTCCCAAACCTTACTCCATCACTTGTACCCATACCCATCGTGGA
TATAATTTTTTCATAGAACCATCACCTGTCAGGGTAAATGGGTACCCATTGGTAAAATTA
TCCGGATTTACAACACACCAAGTCAAGTATTGCATAGTTAAAAACAACAACTTATAATGA
TAATGTATAAAAAAAACAACAATTCATGACAACAACACATACTCGTAAATAGCAACACAC
TCTGGACGTGGGCTAGCTACAGGATTTATGTACATATAATACGTTTAATATATGGATAAG
TAAGAATGCTTATTTTTCAAATTATATGCAGGTACATAGGTACACTGGTATGGGTTATAC
TAAACTACCCACACTCAATATACCCGATGAGTTACAAATTTTCC