morexGenes - Barley RNA-seq Database

Contig contig_272286
Source Contig contig_272286
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_272286 (10070 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_272286

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_43718	1	247 bp	None	Available	Available	None
MLOC_43717	4	4925 bp	MLOC_43717.1	Available	Available	LOC_Os06g12876.1, FRAME:-3, EVALUE:0.0, 13106.m01417 protein expressed protein
CDS Structure of MLOC_43718

CDS Structure of MLOC_43717

Contig Sequence (10070 bp)

>contig_272286 10070 assembly3_WGSMorex_rbca.fasta
TTAGTAGGCTTCTAAAAGAATATATTTGATTGGGCTTCTAGAATAAGCTGGGTACGGGGC
AGCTTATTTCAGCTTATTCTAGAAGCTATGAAAAGAACTGGCCCTTAGCGACGCGCCATA
TCGGAACCCAAGTGTGGTGTGAAGTGGGCAAGTACAAGGAGATATGAGATATCACATAAT
TTATACTCTTTGCGGATGGTGTGGCGCTAGTTGATGATAGTCGGACGAGGGCTAATAGAA
AGTTAGAGCTATGGAGACAAACTCTGGAATCGAAAGGTTTTAGGCTTAGTAGAACTAAAA
CTGAGTACATGAGGTGCGGTTTCAATACTACTAAGCACCAAGAGGTTAGCCTTCATGGAC
ATGTGGTACCTCAGAAGGACACTTTTCGATATTTGGGGTCAATGTTGCAGAAGGATGGTG
ATATCAATGAAGATATGAGCCATCGAATCAAAGTCGGATTGATGAAGTGGCGCCAAGCTT
CTGACGTTCTATGTGACAAGAGAATGCCATAAAAGCTAAAATAAAAGCTAAAAGGCGGGT
TCTATAGGATGGCGATCCGACCCGCAATGTTGTATGGCGTTGAGTGTTAACCGACTAAAA
GGTGACATGTTCACCAGTTGTGTGTGGTGGAGATGCACATGTTGAGATGGATGTGTGGCC
ACACAAGAAAGGATCAGGTCCGAAATGATAGTACACGTGATAGAGTTGATGTAGCACCGA
CTCAAGAGAAACTTGTCCAACATCATCTGAGATGGTTTGGGCATATACAACACAGGCCTC
CAGAAGCTCCAGTACATAGCGGACGGTTAAAGCGTGCTAAAAATGTCAAGAGGGATCTGG
GTAGACCAAACTTGGCACGGGAGGAGTCCGTTAAAAGAGATCTGAAGGACTGGCATATCA
CCAAAGAACTATCCATAGACGGGGTGTGTGGAAGGTAACTATCCATGTGCCAGAACCATG
AGTTGGTTTCGAGATCTTATGGGTTTCAGCTCTAGCCTACCCCAGCTTGTTTGGGATTGA
AGGCTTTGTTGTTAGAAATAAAAAGAGTGCACAAATATAGAATCTACTTTATTTTTCTAC
CCATTAGGAATAGCGGTCTCAACTTTATTATTCAAGTGCCAAAGCAATCAGCCGATCACA
GCCTAATCAGTACAAGATAAGTAATAATGAACTCCAGATGCATTACTTGCTACCATCGCC
CAATGAAGAAATTAGAAATGATCTACAAATTGAAAAAACATGAAACCTGAAAGCAAGTAC
TACAATGAGTGAAACAATCTACTTCAACACAAAGCGCTACTTCAAAAGCACCATAGATAT
GGCCCTCTAGGGACGGACATCCGAGAAAAAGAACCATAAATATATCACGCAAACTGCTGA
GAATACATAGAAAATTTGCGTGTAAATGCAATAGCCTACAAATTACCTGATCATTTGGTA
CTCCCCATTTATTCATGCAATGGTTCAGAAGAAAACTGATCAAATGAAAGAATTCCATCT
TCAGATCTGATCTAGCCTGAAAAAGTTCATAACCAGTAAGCATACAAACTACCATAGGTG
GAAAAACAGATTATTAAAATCTTCAGGACTCCCATATTAAAATGTTGACAGTTTGCCAAC
AGCAAATTTTGCATGAGATCTTTAAGAATGACTAGTTGTCTGCTGGCACTCTAAATAGTT
TAAGATTCTTTGTTGTGTGTCTTCCTAGACAGTTCAGAAATTCATCTATTCAGCGTCAAA
CGATGCATGAAAACCAAAAAACAAGAAGCCAATACCAATAATGCCCAGCCTTGGATACAA
CTGCTTACCAGCATACACTGCAGAAGAGTGATATCCAAGCATGCCACATTGTTCAAAACT
TTCAATACACCAGTGGCTACTTCTTCAAAATTTGATGGAAGAATTGCTGAAGCCTGAAAA
ATTTAGCTATCATTTTCTAGCAAGAAGAAAGCTACAATAAATAAATGACCAACAAAATTA
TATCTATATGATGTCAGAAGGTCATTTTTTTCTCCTTACATGTTACTAAACTCTTTAAGA
ACAATAGTATGCCCGTGAAAAAAATGTATGGGCAATGCCCTTTTTGTTCATGAAACAAAA
ATGGGCACTACTTTGAAGCTGAGAAATTTAGTGCTATATATCAAAATGCATGAGTTCTAC
AAACATCCCAGTGCAATCTTGTAAAGCGACTCTTAAGGCCTACACCACAATTGAGTTTGA
AGATAAAATAACTTTTCTCAGTAAAGCATTGCACCTTAAAACAAGCAGAAACACAAACCT
GGTCAGATGACGATCTGTTGTTTGCCTGCAGCAACACAGCTGTCAACAGTGAAGGCAGAC
TAACCAGGCCTGTCTCGGCCATGGCAGAAAGTACAAGCACTGCAGGTTGTTTTAAGTTTA
TTTCATTGCCTTTTCCAGGACTACCATTTATTTCTGTACATATATTATTCATCTTTCTTC
CTTCAAGGTGACCATCCACGGTACTATTTTCATTTCTCTGAGTGGAAACTTCGAAATGTT
GATCTATTGTATCTCCCAAATTTGACGATTGTATTTCTGACACAGACCCTGAGTTATTCT
GGACAGCAGAGAGGTCTAACAGGCCTTTTCTAGTTTCATCCAATGATCTTATATCTCCTA
GAGCAGAACCTTCGTGTTGTTTGGCGGGCTTGTTTTCTTCAACCACTTCACTAAACCCAC
AGTCACCACATTTCGAAATATCACAAGTGTTAGATGGTAATTTGGCATCTCCAGACTCAT
CCGGTGCCATCAGTTGGTTGCCAACTCGTATGTCTAGTGAATTAAGATACTCACATTCAT
GAGCTAGGTTACCAGCTAGAGTTCTGCATTTGCAGGACTCCCAATCAATGGCAGAAAAGT
TCCCTGGTTTGGATGTTAAGACAGTCAGAAGGTTGAGACCAAATAGTATGGATGATGGGA
GTGGGGACCCTTCCACCTGGGGCCTATCATAAAGGGCAAAAAGATCTCGCAGACGGTGAA
TTGTTTGATAAGCTACAATCAGTTCTATCAGACCCTCCTGCATTTTGAGTTGTTCGTCGT
CAACATATAAGTGACCAACAATGACGGTTACAGTCCATAAAAAACCATCTAAAACTTCAC
CAACTGTCTCCATGTTCTCTGTAGTTTTACTTAACGGAAGATTCAAACTTCCAGAGTTTG
ATGCTGCCACCTTAATGTAATTCTCTAGTGATGCAGATAGCATGGGAATAATCGGAGGTA
AAAGATTTTGTACTAGAAAATAAGTTCGATTAGCTGGGAGTGAGAGTAACACTCTAAGCA
GGCGCAAAAGGTAAACAGTGACTTCACAAGCTACTGGTCTTGAAGTGTGTGAGGCCAGTA
AAGCAGACGCAATGAAATCAAGCAAACCAACTTGTCTAGTAGCATGCAGCTCGAGATCCT
TTCCTTCTAAGAACTGTTAAAAAATAAACAGAAAGGGCTATCAGTAACCATCGTTGCTAT
CATAGTATGGCACAATATGTAATGTAATCAATAAGAAGTACCTTCGTCATGTCTCCAACA
ATCAAACCAATACTCGCTGCACCTTCTTTTCTAGCTTGACGATGTCTTTGCAGGTCCTGA
AGCCATCTACTTAACTTACCTTTGGCAGCTCCTAGAGCAGCCCTATGTGCAATTCCTGTG
TTTTCACCTATGGTTGGTTCAACAAATTCATGCTTGAGAGCCATTAATCTCTGACGAATC
TTCTTAATCTTTCGTTTCATCTGTGTGGCATTGGATGTTTTAACCATAGACTCTGCAGTG
CTGGCATTGCCTACTATCTGTGAATCTTCGCCACTATTAGCTGACGTAGAACGGTTTAGG
CTATCTTTACTTGGGAAGCGGCGCTGAAAAGGTGAAGACTGATCCCTAAAATCCATTGAA
GCTCTCTCACGTATTTGTTCAAGGTAAAACTTCCGGCGCTGCTCACTTTCACGGAGCTTT
TCAGCTAGTTTTTGTGCTAAAAGTTCAGCTTCCTCTTGTTGCACTTTAGCTCTTATCTCT
TTTCTTCGTTGTTGCTCTGCGCTCTTCGCTTCTCGTGCAGCACTAGATGCTTTGCGCTCT
TCTTCTCTTCTGACTATAGCTTCTTCTTTCTTACGCTGTATTTCAGCAAGGCGCTGCATT
TTCTCAGCTTCAAGGAACTTTCTTCGTTCCAACACAGCCTCTTCCCTTGCAGTGTCCTCC
TTCTGCTTTGTTTTGATCACCTGTAGCTTTTCAGCTCTCCGCATCTCAGAATCATGAAGT
TTCTGCCTCAGCAAGAATTTCTTAGTTTCATCATTCAGTGATGTAATAAAGCGAACCTCA
CTGACCTTAGTGCTCTCATCACCAGCTCTTTTCGCAACCTGGGCTAAATACGCTTCATGA
CGAGATTCACCACGTTGATGGCGTGCATTCATTACTTCTCGCAGTTTTGAGCTGCGCACA
GCCTGCAATTCATTTACACGACTTAACTTTTCAGTGGTACGTTGTAATCTCTGAACTCTC
TCACTTTCTAGTTGACTCCTGATCCGCAAAGCTCGTGCATGCTTTTCTTCTGCTTCTCTT
TTCGTATCGAAAGCACTTCTTTTCTTCTTTTCGGGAGACATTAACTTGTCATGTAGAACA
CGTCCACGTTCTGTTACTTTTCTGCCAACACCAGGAGAATGAGAGGCACGGGAACTCCGA
ACAGGAGATTTTAGTATATCTTCCCAGTTTCTTTTTTCCTTCCAGGCATCCATTGATTTC
CACTGTGCTGTATTTTGCTTCTCCTTTTCAAGATGGGTCGTGCTCCTTTTCACAATATCT
GTTGACTTTTTGTTCTCTGTCATTACCCTATCCTTAGAAGTGTGTTTAGCTATCTCAGAT
ATTGGTTCTAGTGCCCCTCTTCTACTCCTTTGTGGGAATGATCTACCTGACTTAAATGCC
TCCTTACTTTGTCTCTCTTCAGTAACTTCTTTCTCATTATCATCAGAAAGTTTCACCTGA
CTCTCCACTTTCAAACTGATATTCCCAACTGTTGCTGATGCTGTAGTCAGCTTTGCTGAA
ATACCTGAAACTTCCCCAGAAGAGCTAGATGCAAAGCTCTCTCCAGTTATACCAGCCTGC
TTGCGTGCCAGTTCGAACTGAATCCTCTGGAAGGCCTCTAGAGATGAAGACAATATCTCT
TGCCTGTGTGGTGAACTTGTCATCCGTCTGACCTGCATACATGATATTTCAGAAAATGTC
TCTTCAGCCTCTTCAGCCTTCACAACTGTTCATATTATTCCAACAGCAAAATATATACAA
GAAATCTACAGAACACACGGTCCACATTCACCAAGACATCATATACCACATTTTTTAAGG
ATAAACATATACCACGCTTAACATGACCAACAAGAACTTTTAGCATTCAACATAGTAGAC
CTGCGTTCTAGGAGAAGTACCCAATTCATCAGAGTGCTAAAAAACTATCATAAAGAGATA
AGAATGGTAAGAAACAACCATATACGCATATTTCTAAGTTCCGCAGACAAAATGAACAGG
TGTAATATGAAAATGAACCACATGAAGGTAATCTTTGTGGAATGGTGAGAACACAGACCT
CCCAAGACAATGCATGAGGTCTTCGATGATCGGCTTTCACAGCCATTGGCATCCCTTCCT
TTGGTAAGCTAGGAGACTTCTTCGTGTTATCAAAATGTTCTGCCCTGGACTTTAGTTCTT
GAAAATCAGATATAGCTTCGTCAAGAACAAGTATGGATTCATTAATTTGCTCCATGTCAC
ATTCTAATTCACAGAGGAGGTACAGTTCATCCACAGCTCTATTCAGATTCTCAAAAAGAA
AACACCAAAGCCTCTGCCTGAATCTTTCTTTGCTCTCAGCAGTTTCACCACCAAGATCTA
CAGAAACCGTTGTGTGGTTACAAAGTAATGATTGGCTTTCTATGGATGCAACCGAGGAAG
ATGTAACTGGAAGTTCAAGATCATTATTTGAGGACAGGGAGACAGAGTCAGCTAAGGTAG
TTGAACCACTAACAACTACAAGACTATCTTGTATTTCACATATATCCAATGGATTTCTTT
TACATTCAGTGGGTGCCTCCACTGCATGAATCAGAGATGTATCAGAATTTCTTATAGAAT
TCATCTCATCTTCAAGTTTAGTTTCATCTTTTAATTCATTTCTGAACTGTGTAGCATCTT
CATCATCCATGTACTTTGTAGAAGAGTTATTATCTCTGAAGGCATCTGAGGGTAATGCTA
GACCTGGGACTTCATCAAAATTTCCAAACTTGACAGAAGAGTTGGGCAAAACGCCTACGA
GCTCTGTCTTTGGAGAACCTTTGACATAATCAATATGTTCTACAGGTTTTGCAAGATCAC
TTGAACAGTTGGGGGATTCATGAGGCACCGAATGATCTGTGAGATCAACCATGCCAGTTT
TCGGAGTATCATTTGTATCTTCAGCCAACTGCAGCTCTTCACATTTTTGCACTACATGCT
CTAAAGCTGAAACACTGAATCCATTCTTCAGGTTACAAGCGCCTACATCAACACATTCCT
CATGATGAACTTTAGTTGTTTCTGTACTATTCAGTTCATCAACGGCAAGATTATCATTTG
TGCTTTGATGTGGGTGCTGTAGCTTGCCATACCACCTTGAACTGCCACTACTGTAGTTGG
CCTGAGACCGTGATGAAGAGTTTGGAGTTTTATTGATGGAACCTCCTGGAGACCTCTGCA
ATGTGAATTTCGAGCTGGATCGATGTTTCTGTTAAAAGAAATTATAGCGAGTTAACAGCA
TCACAGCACCAGCACTAAGAGTGAAAACATAATAGGAGATAAACACACACACACAACAAA
AATCTATTGTGGTGCCATCTTGACAGCCTTGAAGCATCTTAGATGAATCAAACTTGCCAC
ATAGCCCACTCAGGCCTTAATCAATATGGTGATATTTAGAAGATATGGTGTACAATTTCA
ATCATTTTATGGAATTAAACCCGAGCAGAGCTGGTCAAGTACAGGAACCACTTACCTTTT
TCACTTCAAACCACCCTGATCCCAGATCATCCCCATCTCCATGATCATTCTCCATAGCGG
TGAACCAATCCTCAGTGGATCCTTACGGCATTCCTGCCCTTCAGACATAGATTCCACGGC
AAATCCTTTGCGGCATTCCTGCTTAATTTGGGGGAAAAGAAGCTGATATCAGACCAATCG
AATCAAACCGGCAGCCGCGACTGGAGCATCTATGACGGGAAAGGGGATATGGGTCTTTCG
GGGGCGGATCTAGATGGTGTGCACCGCACCGACACACCCAGAAATTCTGGAGGTCAGTGG
GGTTTAACTATTCACCAGATGGCAAAATGCTCCTACCTCGGCGAACAACGACGGAGATTG
AGGACGGGGTCGGCACGGCAGGGGCGAGATGAGGTGGAACGGGAACGGCAATGGCGGCGG
GGGGCAGGCGTCGGCGGCGACGCTACGGCACGGCGGCACCTCTAGGGCACTGAGACACTT
TATTAGAGCCGCCTAGGTGACGTGCCTTCTGGTGCTCCGGGTCAGAGAGAGTACTGTACT
ACTCCTGCTGCAGCGGAGAAGATACAGCCGCAGGATGGAAAACAACGGACAGGATGGCAT
TTGGTGAGTTGGTGTGATGCCCAGTACATTAGTAAGAGGATATTTACGTTTGAGCCCCTA
GTTTCCAAGTTTCCTCGGTTTTGCCACTATAAACTCAAGTGCTCTAGGCAACTCTAACCC
ACGACCCACATGGTCCGCTCGCGTCCGTTTAGGGTAAACAGACACAAACCACAGCCCAAT
GCACGAAAGCAAACGGATGAATATCCGTTTTCGGTCCGCTTTCGACCCATTTCTGGTCCA
ATTTTGGATCGCTTTTGCGGCCACGCGGGCATGCACGGACGGGCGCGACTCGTGCCCTTG
TCCTCCTCTATCCCCCCGTCGGTCAAGATGGGAATGGGCCGGGTCGGCCCGCTGGGTCGC
TAACCCGACCCAATTTGTCGAGGCCAATTGACCAGGTGGGTAGATGAATGTCCGTTTTCG
ATCCGCTTTCGACCCATTCCCGCCTTAATTTTGGGCTGGTTTTGCGGTCAAGCGGACATG
CGCGGGCGGGCGCGACGCGTGCCCTTATCCTCTCGTGGCCCGTCCGTCGAGGACACACTC
GTCCCTTTTTTTATTCCCCCCCCCAAACTCCGGTCACACACCCCGCCCACTCCCCTCTCG
TCCCTCCTTGCATCAGCCGTCATTTATCTCGGTCATGTAGCTGTCAAGCACGATCGCGTG
TCAACCACATTTCCTCCCCACCACGAGTTGTCCAACCTCCCCCCTCCTGTCCGCCTCAAC
GCAACCGATGGCCGGATTTGGAGCGGATCTCGTCGGATTTGAGCAAGGCAGGCCACTAGA
GGTCGCATCATGCCATGGACTGACCGGGTACCGATTCGCACAGCCCCGGCAACACCCCAG
GCCGCATGTAGGTACTCACACCGCCTCTAGCCACTCGGATCTATCTCGTCTCCGGTTCGC
CAACAAATACACCAACGGGCGTCGTCCGAGCTCGGTGGTGGCCCAAATGCTCGTCGGTGC
ACCGATGTCGTTCATAAAGTGCGATGATTGTCCACTGAAGGTCGTGTGTCGCGTGTCTAC
AATGTCAGAACACCCCGGACGGGTGTTTGTCAAGTGCAAAATTGATGGGATATGTGCTAG
TTTAGCTTCGGTTGTGATTTCGGATTCGGCTTGTTTTGCTTACACTCAAATATTTATTGT
GTAGGATGGATGCAACTTTTGTTTTTGAGAAGAAGAATGCATCGATGTACTGATAGGACG
CAATTCCATAGATGTTCGTGCACTTCTTGCTAGAGTAGAGGCTAGAGATGAGACTAGATG
TGAGGAAGCAAAGTCTACTTCTTTAGACTCGAAGAATAAAGAAGCATTCAAGATCAAGAC
TCCGCAGATCAACAATGATTGCATCAAGAAGGCACTGATCCAACTTACGAGAGCAGTTAT
GGAAGTTGGATATATTTAAAATGTCTTCTTGTGGTTCTTATTTTCTTTGATCTTGTTATT
CTAGCTAAGATTTGGTGAATATATTTCAATGTATCACAAAAATCATTGATGAAAATAATA
ATAAATGATGAAAAAAACTATGCGGACGAGATGCGACCGTGCATTGGGCGCCCGACCGAC
GCAAACACAAATTCGGGCAGACAAACAATGTAAGGGATCAATGGGAGGCACATAGGGGTT
TTCAACATACTTTCTCAAATGGAATGCAGCAAATATATCAAGCATTTCACCTTTCCATTA
ACTATAGTACTCCCCATTGAGAATAGGCACTCTACAACTAAGATTTCCCAAAAATAGACA
TACCCATCTTCCTCCAATGGTGATTAAACCAAGGCTATGGAGACCAAAGCTCGTATACCA
ATTGTGGGATGACTAAAAGGGATGTCTGTAGGGGGGTGAATAGACTACTTGAAAAATTAA
AACCAAGCATTTTTTTTCAATTTTAATGTCTGGCAGATTTTAGCATTTTATAGCAAGTCA
AACACACCCTACACATGCAAGTCTATGAGAATAGCAACGAAAAGTAAAGACATGCACATG
CAAAGTAAGGAGTGTAGTTTAGGAAGATCAAACGCAAAGATTGATACGGGGATTTTTGGC
ATGGTTCTGATAGGTGGTGCTATCGTACGCCCATGTTGATGGAGATTTCAACCCACGGAG
GGTAACGGTTGCGCAAGTCCATGAAGGGCTCCACCCACGAAGGGTCCATGAATAAGCAAC
CTTGTCTATTCCACCATGGCTTACGTCCGCGAAGGACTAGCCTGACTCGGATAGATCTTC
ACGAAGTAAGCGATCTCCTTGCTTCAACAAACTTATTGGGTCAACTCCACAACACGAGGT
AGGAGGCTCCTAAGCGACACCTAAACAATCTAGGAGACTCTAGTCTCCAAAAGGTAATAT
ATGTGGTACTATGATGAACTCCTTGCTCTTGTNNNNNNNNNNNNNNNNNNNTCAACACTT
AATCACTCTCTCACATATTTGGCTTGGGTGGAAGAGATTGATTGGGTGGA