morexGenes - Barley RNA-seq Database

Contig contig_271470

Source Contig contig_271470

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_271470 (5117 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_271470

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_43584	1	1717 bp	MLOC_43584.1	Available	Available	None
MLOC_43583	3	3172 bp	MLOC_43583.1	Available	Available	LOC_Os11g22280.1, FRAME:+1, EVALUE:7e-33, 13111.m02153 protein retrotransposon protein, putative, unclassified

CDS Structure of MLOC_43584

CDS Structure of MLOC_43583

Contig Sequence (5117 bp)

>contig_271470 5117 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCCCCCTCCCATCCCTTTCCCTCTTGCTCCCCAAATTGCCCTCCCCCACCT
TGCATTGTTCCTTCTTTGGACACGGTGCGTGTTATAAAGCCCGGGGCACTATCGTTCACG
TTTACGCCAAGATTTTTTGTTACATTGTACATGTACGTGCCGTATAAGGAAGGTCCTGAT
ACCCCCCCCCCTCCCACCTCCTTCTTCGTTGTTGGTACATGTGTGCTCCTTCCTGGTCAT
TAATCATGGACGCTACCCGAGAACCGTAAGGGCGAAGTGGGCGACAGTACATGCCCCAAA
TCTTACTTAAGTACTACTCTTATTAATAAGAGGAGACCGTGTGTGGGGCGGCAACGGGAA
GAGCAAATGAAAGTACCACCATGGTAGATTGTAGGAAGCCCGGCGGGAGGGGGAACAACT
TTTTGATTGCCCCGTCTCTTCATATCATGATCGGTCGATTGAGGAACACCTCGTGTGCTT
CTCCTCCCACGGTTGGTTTGTTGGGCAGCTTCGGCGCTCTCGATGTCGCCTCTAGTCCCA
AGTTGATCCCGTAAGTCTTGTTGATCAACAACTTCCTGACACAACCGACTACGAGTCTGT
AATCTTTCATCAGATTTATACACATCTAGGTTCGGTAATAGATCATATTCATATCCTCAC
ATAATATTATTATTTTCCTTTTATGTTCTTGTCTTACTAAGCCTAAAGTTGATGTATCAC
TATTTGAATCGTCGATTTTCCTTAGTTTATAGAACATGGAGATATTTATTACATCACTCC
TCATCATGTCTTCACGAATTAGGAAGTCATATGATTAAGTGAAATATAGTTTGGCTATCC
ATATTTTAATTTCTAGGGTTCCATCATAATTTGTCATATCACATCATCCTTGCCATTTTT
CTTATGTTGCCAAGCCTAAGATTCATGTATCACTTGTTTTGCTCAGTCTGTAAAACAAGA
AGAATTTTATTACAATTGGTTTATTGTCCTGAGTTGTCTGAGAACAAAATTTGGACCAAT
CAATTTTAAACGGGAGAGGAAAGAAGAGCCAGAACCAACCCGACATCGCAAGTGGAGGCT
TGACAGTTTGGTGTGGGGGGTGGGTTGCCGGTGCGAAAAAGAAAGGGGTACGGAGGGATG
GTCGTGGCGGTGGCGCCACAATGACTGGTGGTGGTTCGGCGACGCTATCGCATCGTAATC
TATCGATAGTTGAGGCCGACAATTAGGTCTAGGCTGGAGGAGACGGGCGCCATGCTAGGA
AGAAGGAGGTGGGGTGGTATCAGATTGATATCCAACGGTTGGGGCGATTTAACTTTAACA
AAACGCAATTATTTTATAGGTGCTCCTTTATTACATCTCCCCATCATGCTTTCAAGAATT
AGGGTGTCAACCGAATTAAGGTTTTATTTTTGAATTTTGTGAAGACAAACTTTGGTTGTC
GGTATTTTAGATTGTAGGGCCCCATCGTACATTTCACACCGAGGCCCCTGGTTTGTACAT
ACGGCCCTGGAAGCTCCAAAACCAGAGTTTTCATTTTTTGGATTTCGCACATGAATACAC
CAACTTTTCTAGATACATACGGCGTACACGCTTGTTAATTTTTGCCATCCTAATTGCGGT
TCCCGTTAACCACAAGCCAGGCAAAGGCGCGCGTGCGAGACACTCAGGTGGCGGCGGGAA
GCTGCAGCGAAGCTTCCTGCGCCCGAACAAACCTCCCCGCCCAACCAACCAACCAACCAA
CTTTGTCGCGCAGGTGATTAAAGCAGCGTCCTTTTTTCCTCTTTTTGTCTCTCTTTCAAG
GGAGTTATAAAACTTTGGTTTGGAGTTTGGACGCACGCATGCATGCATGCATGCATGCAT
GAGCGAGCGAGCGGTGGTGTGCAGGTCGAGGGCGGTGGTGTGCACGGCTGCACCAGCAGC
CAGCCTCATACACGAGCCTTGTCTGAGCCCTGAACCCCGAACCGCCGCGCTTGTCCGGCC
CTAGCCGCGGCGTCATCGGCGCGCGCTTTTGCGTTGGCTTTGCTATCTGAATCTTCATCT
TGGTCTGGATATGCGTGATCGTTGTCTTTGGTGGTCGGTTAGGGCGATGAGTGATGTGCT
AGAGTGAGGTTTTCATCTTCAGTTGCGATTAGGTTTGCAGTGATCAGACCGCCACGTCGG
TGCGTGCGCGCCAGCCGTGCGTGGCTGGCCTTTTGCTACCGGTGCGTGCGTGCCTTGCCG
TTGCCATGTACACTTGTGGCCGGCCTCGGCTTTCGGCGCGCCAGTTTGTGCGTGCGTGCA
TGCATGCTTGCCGCGCCGCATGCCTGTGCGTGCGTACGTGCACGCCATGGCTGAAGCTTT
TGGTTCGGGGTGGTGGGCGCTGGCCACGGGACAAACCTCTTTTGGAATCAGGCGCACGTA
TGACCATTATCGTGAAGCACGGCAGTTTTTACTGTGGTGCATGGAATCCTTGGGTGGATG
GATGGATGGATGGATGGACGGAGTAGATCGATGACAGTTCGCACCAGTGACTGATCGCAA
GAACTACTCTGGAAGAAGACCGGCAGTACGTCGACACGGACGCGGAGCGTCCCCGCCGAT
CGAATTACCCGTCATGTCACCGTGTCACGTCACACACAAAGCTAAAAGCCTGTCGTACGC
GTGAGTCGATCAGACTGTGATGTGATCTCACTAACAGTAGAATCGAGGTGGCAACTCGCC
CCCTGTGCATCGATCAGATCCGATACCCACTACGTACTACCGGTGGGAGTACTGCCTTGC
GTCTCGTCCATCATTTCGTGCCAAGCTTCCCACCAGCCGACTATGGTGTACTTTTACTGT
TGTTGTAATAAGAGCCTCTCCCCTACGGTTCTACCTCTTTGGATGTGTATATAAACAGAG
CAGTAGTTAGCCAACACAAGACACCTTTCAGATTATATCATAATCCCTTCTTGGTATCAC
AGCCATCACCCCCCTCTTCATCATGAGCAACATCTCTCCTTCTTTTGGCGCCCCAGGGCT
TCTTGCCATGCCCCCTCCCGTTCGTCGTTCCTTTCCTCTCGCCGGTATCCAGAACACCAA
GCATGTTCTCCCCTCCACCCAGCCTCCTATGCACCGAATCGATATTATCGACTTCATCAA
TTTCAAGCTAGATCCCGCCGCAAACAACTACACTCAATGGACGCGGAAGTTCTATGCTAT
CCTTGCCAAGTACGACTGCACCCATCATGTCGACCACGAGTCTGATCCCCATCTTCAAGA
TGCGAAGTGGCGCAATGACGATCTAACTATTGTGTTGTGGTTCTATGCTACCATCTGCGA
TGAGCTCTATGAAGTGGTGAGGGAGCCAGAGAACACCGCGTACAATGTGTGGGACAAGTT
GTACACTTTCTTCCGGGACAACGAGCCCGGATGGGCCATCCACATCCGTGAAGAGTTAAG
CGCCACCAAGCAGGGAGACATGACTATCGGCTCCTACTGCCATCGACTAAAGGCCCTTGC
TGACGCCCTTGCCGATGTAGGTGAACCAGTCAACGACGAGATGTTGATATTGCTGATGAT
CCGAGGGCTCAACTACCGCTTCGATGTGCTCGCGACTATTCTTCGTATGCAAATGCCTTT
TACTACTTTTGTCCAGGCTCGTTCCCTACTGTTGCTTGAAGAAATCAATCTCAATGAGCG
TGATAGGGAGAAGGGCTCCTCCGCCATTACCATTGGCACCAACACCAGCTCCAACTCCAC
CCCAAGTGGAAGCAACAATGTGAGTCAAGGCGATCGTGGCGCTTTCTCCAGCATCGGGGT
TGGACAGTCAACACAACTGCAACAACGACCATGCATGGGCTACTATGCGCCATGGGGGGC
GCCCTTCCCATTGCCAGGGCAACCTCCTCGCAATCAGTGGACCACACGGAACATCGGGAG
CGTCCTTAACCCATGCACATCTACTCCAACTCAAGCATACCCGTTGCTCTACTCCGAGGT
ATCCAATTCCATGCAATCGCCTCCCTCGTGGGGCCAGTTCTCTCTGATCAGCACAACTCC
CGGCAACACAAGCTCCACCCCTCCCCCAGCAATGGCTGGTACATGGGCCCTGCCGCGTCA
TCGCATGTGATGGGTTGCAGAGGTAATCTCAACTACTCTCTTTTCTCTTCGATGCACACT
TCTCGTAGATTAGTTGGTAGTAATGGTTCAGAGATCACAATTGATGCTACTTGTTATAAT
ACTTTTCTCGACCACACCCCCTTTCTCTCAACAACGTTTGATGCTTCACTCTTGATTGTT
AGTGACTTCATACTAGTACACAATTTTACTGGAGGCAATTCTTGTTCTATTGAATTTGAT
CTAGTTTTTTTTTGTGAAGGATCTAGCCACCAAAGAGCATCCTCATGAGATCTAGTTGTT
CCAAAGATCTATATCCGTTTTCTCCACAAATAAAACGTGATCCCTCGATCTGCTCCATCA
ACATGTGGCATTGGCGACTTGGAAACCTAGGGCGAGCTTCGTTAGTGGCTATGGAGAAAA
GGCCTTCCTTCTCGTGATAAGCCAATGCGGGCATCACAAGTTTATGAGTCTTGTCAATTA
GTGTGGCAACCTCGATTGCCTTTTCTTATTTGTGTTTACTATATCATCATTTAGAATAAT
ACATTGTAATTTGTGGACTTTGCCAGTTTATGGTTTATCTGCTTTCTTATATTACCCTAT
CGTTTTATATGATTATTTTCATTATTCCTAGACATTTTCCCTTAGAAACAAATCTGGTAC
AACTAACACCTTGCAACGTTTTTTAATATTGACATGTGGCTGGACCTACCCATGTCAGCT
TTTATTGGCCCCATGAGCGAGTGGCAATGGGTCAAATTCATAGAATTCATAGAAATTCAA
CGACATCTTCAGTTTGAAATATGTTATATATGAAAAATGATGAGAAAACATACTCTATAT
ATTTATACCATGATCATGCATTATTAAGCAACTTAACCTTGTTCTTTAGGGTAAAACAAG
TGATATTTTATTTAAATGATTTGAAGTTGGAAATATTATATTTGTCTGAATTCCACTTTG
ATTAAATTGTTGATAGCTGCATTGGGTCAAATCAACATCTTAACATGTCATATTGTGAAC
GCGGTTGATGTAGTGGA