Contig Data
morexGenes
Links



Map Locations of contig_271272 (5216 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_271272

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_43555 1 783 bp AK372176 Available Available None
MLOC_43556 2 1094 bp MLOC_43556.1 Available Available LOC_Os01g71980.1, FRAME:-2, EVALUE:1e-156, 13101.m07841 protein rho-GTPase-activating protein-like, putative, expressed





CDS Structure of MLOC_43555






CDS Structure of MLOC_43556






Contig Sequence (5216 bp)

>contig_271272 5216 assembly3_WGSMorex_rbca.fasta
AGCATCGCGCGGGGCGTCGCGGCGTCGGGCGTCCTCCCGGCCTCCGCCGTCCGCACCGCG
CCCCACCGCCGCCCCGAGCGCGCCGCCGCCTTCGCCTCCCTCGGCGCCACCATCCTCGCC
TCCAACGCCCAGGTCCGTCCGCCTCCCCTCCCCTTCCCTCATCTGATTCATTCACCCCGC
CTTCCCTCCCTCCTCTCCAACCCCGCCCTCTGCCACGTCTTCATGCCTGCCTGACAGGCA
CTCCGCGTCTCACGTCATGTTTCCCTTTTCCCTTCTCATCTCATAGGTCGTCGACGACAG
CGATGTGATCGTCATCTCCGTCAAGCCCCAGATTGGTAAGTGTACCAAGTATTATCTGCC
CCTGATGAAGGCCATCAATCAATCAATCACTGATGCGTCTCGCAAACGCTTCTTCTCCAG
ACAGTAGTACTGTTTGCTTAGTCCCTGAAGAACTGAAAGCAATCGCTGGCGCCTCAGATT
TAATAACACCTTGAGCTTTTGTTCGCGCGCTTACATGAGATTGTTATGCACGTATATGAA
ATTGCAGTGAAGCAGGTTCTGGTTGAGCTCAAGCCCTTGCTGTCTGAAGAAAAGCTTCTC
GTCTCCATTGCCGCCGGCATCAAGATGAAAGATTTGCAGGTCAGTCATTATGCATTCGTT
CAATGTCTGTTCAACTTGTCAAACTGTAGTTTTGGTAAAATTACCCTCCATCCAAATTGT
ACTGTAGTAAGTCGAGTGATGCACCTCCAGAAGAATAAGACTGACACTTCAGTTACAGTA
TGTCAACATACAGAGACATCTTCATTTTATTTGCACTCTTTTGATTCCAGGATTGGTCTG
GTCAGCGCCGAATCATTAGAGTAATGCCGAACACTCCCTCTGCCGTCGGACAAGCAGCAT
CAGGTAAGCATAGGCTGACTCATCTACTCTACACTTTACCTATTGACATGCAACCTATCT
ACTCTACACTTTACCTATTGACATGCAACCTATGAACTACACACATAGTATTATTGTTAT
TGTCAACTAATCGTTCTTATGAAGCAATCACTTGACAAGAATTGTGTGGTGATCTCTCTC
TAGTGATACCTTACAAAAATGTGACTCTTATTTTGTTCAGGGCACGAGTCTAAATGAATG
CTAGCAGTATTATCCCATGGTTTTGCTCCATTTCTATGCTTAATGACTAATTCAAACAGG
ACATCTCATTTGTTCTTTTGTTTCTGTTTTTCTCTTCTAATATTGGTGCCTCTGAAATAC
CAAGGTTTACCTAATTGAAAATTTCAGTTATTTTACTTCTAAAATCTTCAATAATCAGTA
TGCTTTGTTGATTCATTATTATCTGCCACGACTGTAACTTTGACTTTGAAACAGGCAGCA
CAGTATCTCCTTTGATTTTTTTTCAGTAAAAGGACTACCATTCCTTGATGTTATGAATTT
CTATTAGTGGTAGAAAATTGGTAATGCTAGTAGAACTTACTAAATGGAGGTAGTATTACT
ATAATTTGGTAATGCCATTTTTCACACAGTTTAAACTGTATTGTTTCTTGCTGATGTTGT
TTCATGTACTACTCAGTGATGTGTCTAGGAGAGACGGCTACTGAGAATGATGAAAATCGT
GTAAAGAGCTTATTTAGTGCCATTGGAAAAGTTTGGACAGCCGAAGAAAAATATTTTGAT
GCGGTTACTGGCTTGAGGTATGTAACATATTCTTTATGAATAGCAAGGCCAAAAATAGGC
CGTGATTGGTTCCAAAATCAAGTATGAACATGCACTTCCATCCATTTGAATACAGTGGTA
GTGGTCCGGCCTACATTTTCTTGGCAATAGAGGCCATGGCTGATGGTGGAGTTGCTGCTG
GGCTTCCTCGGGATCTTGCTCTTGGTCTTGCAGCTCAGACAGTAAGTGCCTGTTCCATAC
TTTGTTCCTCTTCGTAGTCAATCTTGCACCATCTTGCCTAGTTATTAAGCTGGAACCTTA
TGTATAGTTCCTCTGCGCATTGTGATTTCAAGTTCTCAGTATCCCTTTTTTTTCAGACCT
GTTTATTATCCCTTTTCTCAGTATCCATTTCAAAGATGCAATTTGTGGATCTTCTACATT
TTTCATTAACTGCTGTGCCATATTTATCTGCTATTTAGGTTCTAGGTGCTGCAACCATGG
TTAGCGAGACGGGTAAACATCCAGGCCAGCTGAAGGATCAGGTCACTTCCCCTGCAGGAA
CTACGATAGCTGGTGTTCATGAGCTCGAGAAGGGTTCGTTCCGTGGCACACTGATAAATG
CCGTTGTTGCTGCCACAACAAGATGCCGAGAGCTCTCAAAAAATTAGTCCTATAAATTTA
TTAGCCCTTGTTAGGTTTGCTACGATTCTGCAATAAAATGGTGTAGACATGATTTATGAG
ATATTTAAATCTCAGACTCGAAACTAGTTGTCAACATATTTTCCTGGTCTATCTAGTGCC
GTGTGATGTTACAACAAACTAGGTACCGACAATGCTTCAGTTAACTGAAAACAAAGTCAT
ATCAGTCACTTGCATCCAGGACCGTCTGATCTTCATCTAACGGCTAAAAATAGACCTGAA
ACTGTTTATCTTCTACCTCGTGCACATCTAACGGCTAAAAATAGTCCTCAAAATGTTTAT
CTTCTACCTCGTGCAGCCGCTGGCCAACCCATGCCTAACCGCCCCCCTGCATCCAGCCAG
CTAGCGCCGCCTCGCCCTCCTCTCTGCCTCAAATCATACAACTAATTGGCATGCATTGAT
TCGTGCTTCCATAAACAGAGACCTCAAATCACATCATTTTTTGTATGTTAAATCTGTCCT
TCATTTGGTATTGTCTCTACAAATATGGCATAGACGCCCATGATTCAAGACACTACCTTA
TTATGAACAAAGTTTCCACAACAATCCGGTATGCATCGCCTTTTGCTATAACATATATAC
ACACAGACAACTTACAAGCCTTCAACAGCACAAAATGTCACATGTAATTGCGAGAATTCC
ATCGATCTTCAGGAGACCATTTGTCTTCATACCTACCAAGCGAGTACCCTGCTGCAGGTA
TATCCGCAAGATGCAGAGGATCAGGTTCTATACCATAGTCTGTCAATGGTCGGTGCTCAA
GTATCTTGTCATGTTCAGTAACAAAATCTGGAATCTCAACTTCACCCTTTTTGATGTCTC
CCCATAGATATTCCAGCCGACTAACATACTTGATTTTCCAGTACAACCTGCAATAGACAA
GCAATATAAGTGAGGAAGTATATACTGGAAAGTGGGTGCATTTTGGCTGTGCTAGGGAGT
GAGCAGTGAAGCTGAGATGACATGTGTTCAACATAAACAGTACGAGGTAGATTCCCATCA
ATATCTAGTCAAGTACAGAAGGTTGAACACTAAAAATCAATGAGTCAACAATCTCTGCAA
TCAGCCTGTCCATTTAAACCACAATTCCACAGAGCGTATTAAAAGTACAGGTTACTGCTT
ATGATTCATGAACAGCATAACACAACCCTGGAAGACCATTTGGCAAAATTATTCACAGCC
AGAAAAGATAAGCAAAAGCCATAATCCATGTGTATAGTTATTGCTAGTTTCCTTATATTA
TGGTAAGGACCTTGAACTAGTTCCCTGTAAAAATGGTATGGAAGCTTTCTAGCTATCATT
ATAAAACAACCCCGCATGCCACAAGTTTGAGCATTTTTAATGTTCAAGAACTGTAAGAGA
GAAAACTGACCCTCCGCTTAAGAAGAGCCTGCCTAGTGTGGCCATGGCGAGCCAGGAATA
AAGCCCGGGATGCAGGAAGTACACTATTTGCAGCCTTTCCTTGTATTCAGTTGGAAGTCC
TTCATAAATCCCCCTCAAGATTGTCATTCCAGGATTGTTGTCATCTGATTGTACAGTGGT
GTGTACGTACAAGATGCAGAATGGACCCTCTGGCAACTCGGTGCGGAGCTTGTGAAACAC
ATACCTCTTCAGACGTTCACCATCTATAACAGGAGCTGGAATACGAAAAATAAAATGCCA
TGTGAGTATCGCAGGGAGTGGTAAGGACTAATATCACACCAGCGGCAAAGCTCGTAGCAT
CGGAACATCAAGTGTGTAGTAGAAGTTGTCAACCTCCCTTGGTAGCTCTATGCGTCAAAT
CGTGATCGTGTCTATGCGCTGATTTTGAGAACTAACGCTAACTGTGGTACTGAATCTGTT
ATCCAACGATAAGTTATGCCAATATGACATGGAAAGGAACCATCCACTACCAGTAAAGAA
GCTACATACAAACTGGCATGCTAGTTTCCTTATAAAATGGTGTATGCTCGAGTCGTCCGA
CTGATTTTGAGAAATAATATTTGGCAGTACTGAATCTGTTACCAAACCAAGAAACTAGAC
CAACAGGGGATGGTACCACTAGCAAAGAAGCCAGCCACATAGGCAGCAGATTACTATTGA
AATGAATGTGCATCTCCAACCTTCAGATTTTTTTTTTCAATTTTGACAACCAATCGCAAT
AGAACGTTGCTGAGACATAGATATGCTGACATCCTAAGTATATCATGCATTTTGACAACC
AATCACCATATAACAGCAAAAGAATTCGTTGAATGACTCGCGCCAAACCCTAGACGAGCA
CCGGCAATCCCCAACCACCACCCGATAAATCCCAGGACGAGGAGAGGACGGGAAGTGACG
AGAAGGGATTTGGCGCACCGGGGAAGAACTTGCCGACGACGCGGACGACGGCCCGGCCGG
ATCTGTCCGCGCCCTGCACGCGGACGACCTGGAGCTCCTCGAGGTCGGAGAAGTCGTCGC
CGAGGTCCGGGACGCAGTCGTGCCACTCCTCGCGGTCGGCGGGGGAGGTGAGGAGCGCCG
CGCCGGCGTCCACCGCGAAGTCGGACCCTATCACCATCACGGAGAAGTCGCCGCCGGAGC
CCGATGCGAGCGCCATGGCCGGCCGCCCCTCCTGCTGCAGAGTCCCCGCGAGCCCGGCCC
GTCAGGCTGCAGGTGGAGATGGGATTAAGTGGGAGTAATTGGTCCATCCCACTTAATTTC
CTTTAGTGGGCTCCCATTGGAAACAAATGGGCCAGCCCACTTTTTTCATTGGATCCCATT
GGGACCCCACTTAGATAACTACAAGCCCGCTTGTGCCCACGGGAACGCTATTTTTCTCCT
TAAGGCCTCGTTTGGTTAAGGGGGATTGGAGAGGTTTTGAGAGGAAGGGATTTCAG