morexGenes - Barley RNA-seq Database

Contig contig_271078
Source Contig contig_271078
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_271078 (6098 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_271078

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_43526	1	1431 bp	MLOC_43526.1	Available	Available	LOC_Os05g05680.1, FRAME:+3, EVALUE:0.0, 13105.m00599 protein 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed
CDS Structure of MLOC_43526

Contig Sequence (6098 bp)

>contig_271078 6098 assembly3_WGSMorex_rbca.fasta
ATTATAAAAAGATTAAAAGCGTGTGGTATTTTTTTCTACCGTTGCAACGCACGAGTCCTT
TTGCTAGTATATATCAAATCAATAAAGCTCCCTCGCTATGCGAAACAAAAAAAAATATCA
CAGACTGGATAAACTTGCGATCAATCGGTTACCTGTCAAATCGGCTGAAAAAACTTGATT
TAGAGTGGCGGGCCTAACGGTTGTATTCTAAATTTTAATTGTTATTGAAAATTTGCACAT
GTAGGCCAAGTTGAACACATCAGTTTCCGTATAAGTATCAGCCTAACAGTTTCCCTTTTT
CATTACTTTTCACCAATGTTTTTTTCAGAAGAGGTCTAGATATATTTCTGTTTTGAATTC
AGATCAACTTATCTCTTAACGAAATATGTGAACAGTCAAAGTTTTCATACAACCAGAAGA
CATCTAAATTTTAGATGTGCGGTGAAGAACCAACCGGAGTCATTCGTGCCTCTGCCTCAG
TCAAGGCTCCTCTGCCATTGTGATGTCAGTTAACAAGTCACATTGACAGGGATATGAACT
GACATGGAGATGCCGGTACCAATTTGCCACAAGCATCCAACGGTTGCTGCTGCGCAGAAG
CTTCACATGAACATCTGCCAGGCCAGCTCCAGTCGCTCGTCTTGACCGTATTTTTGTCTC
AAAATATATTTGTTGACCAGATTATCCCACCTGGTGCCCTATAAGTACCATGGCCACCCA
CGTCTCTCCAGCTCATCCCATCACCTTACATCCACAAGTTTGCACACAACACCACCCGAG
TCTGAAACTCTGAGAAAGCTCATCGTCGCCAATTCACCATGGTTGTTCCGGTGATCGACT
TCTCCAAGCTCGACGGCGCCGAGAGGGCGGAGACCATGGCGCAGATCGCCGACGGCTGCG
AGAACTGGGGGTTCTTCCAGCTGGTGAACCACGGCATCCCGCTGGAGCTTCTTGACCGCG
TCAAGAAGGTGTGCTCCGAGAGCTACCGCCTCCGCGAGGCGGCGTTCCGGTCGTCGAAGC
CGGTGCAGACGCTGGAGAGGCTCGTGGAGGCGGAGCGGCGCGGCGAGGCGGTGGCGCCGG
TGGACGACATGGACTGGGAGGACATCTTCTACCTCCACGACAACAACCAGTGGCCTTCCG
ATCCTCCGGCCTTCAAGGAGACCATGCGGGAGTACCGCTCCGAGCTCAAGAAGCTCGCGG
AGCGGGTCATGGAGGCCATGGACGAGAACCTCGGGCTGGACAAGGGACGCATGAAGGCGG
CCTTCACCGGCGACGGCCTCCACGCGCCATTCTTTGGCACTAAGGTCAGCCACTACCCGC
CGTGCCCGCGCCCGGACCTCATCACCGGGCTCCGCGCCCACACCGACGCCGGCGGCGTCA
TCCTGCTGTTCCAGGATGACAAGGTCGGGGGCCTTGAGGTGCTCAAGGATGGCCAGTGGC
TGGACGTGCAGCCGCTCGCCGACGCCATCGTGCTCAACACCGGCGACCAGGTGGAGGTGC
TCAGCAACGGCCGCTACCGCAGCGCTTGGCACCGCGTCCTGCCCATGCGCAACGGCAACC
GCCGCTCCATCGCGTCCTTCTACAACCCGGCGTTCGAGGCGGCCATCTCGCCGGCGGTGG
GCGAAGGCGGCGCCGCCGCGTACCCGGACTACGTGTTCGGAGATTACATGGACGTGTACA
ACAAGCAGAAGTTCGATGCCAAGGAGCCAAGATTCGAGGCCGTCAAGGCGCCGAAGTCAG
CTTAATAAGCTTATAATCAAGGAGATTAAAAGAAAATTATTTACCTATTAGCTTGCTTTG
TTTTACAATGAAGAAAACTATGTTTTTTTGGAGTTTATTTAGACGCGTAACAATGTGATG
TGGGGATACTTATGATCGGTTCGGTGTGAAATAATTGGAAAATGAAATACTGTGGATTTT
TCATTGGAAGTATCTGTTTACTTTACATGAGCCCCGCTTCGATACAAATGTATCACTCAT
CCCTGATAAATATATAAAGTATAATATAGATATTTGACGAGTTGTATTCATTTTTATATG
TATATGATGGGTCACCCGTCGAAACGCCTACGTCGTATTTAAGTGTGCGAATTGATTGTG
AACTCATGAGATCTGAATTTTTTTGTTCAAATAAACAAGGACGATGTGAGGCGTATATGT
AAAAATATTCAGAATAAAATGCCATTCGTATAAAAAAGTAAATTCATGATCTAAAACGAT
GAATAGCATGGTGAATTAAAGCGCTAGATTTGTTTTCCGGCACAACTCTCATTTTAATGT
ATTTTGTCCTAAATTTTTTTTAAATTTTTTTGTTGATAAAAGTATGTGGTTTACAATTTG
TATTCATCTTTTTATCAGTTATTGGGAATTTGTTATCAATTCTATAAAACAATTATACAC
AATTTAAAATTATAAAGTTGTTGTAAATTGGTTAGAACATAAGAAAATGTTCGTGTTGGT
TAATAATGACGAAAATTGGAAACACATCCAAATTAGGAAAAACTACATGCTCAGGGGTGC
ATCCGTCTGTCCTAGTTTGGCACACTCCTGTGGGCTGGTGGTTTTTTGGACTGTGGATAA
ATGATGCCAACTTACTGTAGTAGCTTGGCATTGACGTATGATGCACTATGTCAGGTTTGA
GCAACCTTCGACGCCATTTGAGCGCTGCCACACCCATTTATTGACCTTTTTAGACCAAGA
AAACTTTAGAAAATGTAAAACTTGTCAAAAACCAAAATAACTTGGCATGATGCCTTGGAT
TGGGCATACAAGGACATGAAAAAAAAATCAAGGTCATTTCAAGGATGTATAAAAACAACA
TGTTCTCACACATACCCTTTTCGAGTACCCGAACACCCTCGCTGAACATGTTGCTTTCGT
AGATATCCTTTAAATGACCCTAACTTTTTCCACCAGGTGGGCTGCCCATGATAGGTATCC
ACACCAGGTTTGAACAAATTCCAACATAGTATACACGTCGCGACATGTCATTTCATTTAT
CGGTCTTTTTTCATCGAGAACACTCCAGAAAATTCAAAACTTGTTGAAAACCCAAACGAC
TTGGGATAGTGCCTTGAATTGGTTATAGAAGGCCATGAAAACCATTGGAACCATTTAAGA
ATGTCAAGAAACAACGTGCTGTCAAATGGAGCTCTAGCCTACCTCGACACCCTCTATGGA
ACATGTTCTATTTTGGGGCATCCCTGAAGTGAACCAAAATTTTGCAAGCAGGTGGGCATG
AATACCATAGTTATTCATGCTAGGTTGAACGATTTATAACACCGTATGCAAGTTGCGACA
CGTCAGGACATTTATCGATCTTTTTTACCAAGAAAACTCCAGAATAAACAAAAGAAAATC
AAAAACCTAAACAACTTCAAATGGTGCCTTTTATTGGTCATACAAATCAAAGAAAAATTT
GGGGTCATTTGATGGATGTCAAGAAACAACGTGCTCTTGAACTTGGACAACCTGCGTTGA
ACATGCTAATTTTTTAGACATTCTTTAAATCACCCCAACTTTTGGCAGTAAATGGGCATG
CCTATAGTAGGCATCCATGCTAGGTTTGAAGGGAAAAAAATATTTAGAATCATAATTTAA
TCAGGTACTAAAAAGTGTTTTTTAATTTTGTTAACATAATTAATAAATAAAAAGGGACAA
ATTTGAAATCAATAATTGTTAAAGAATTTATTAAATCATTGAAAGAAATAATAGTTTAAA
ATCATTATTTATATATTCGAAATAACATTTCATATTTTTGAGCAGGTTTCAAAAATAATA
ATAAAGTTGAAAAATGAGAAAATTGAATGAACAAATGAAGAGAATAGAAACGAAAAGCTT
GAAAAATGAAAGAAACTGCTTCGGCCTTAGCCCAACTATACGACAGCATCACCCCCGTTG
AGTGTTTGTTAGCCCGGCCGAAGTGCTCGCGGATTTGAAAGAAGTTCATCTATTAAAAAC
GGTCCCTGTTTTCAATATTTGTTCCCAAATTAAAAAATATTACGATTTTTATTAATCTAT
AATCTACTCACTAGTTTCAACAATATTTTGGGAGTTTCAAAAAATGTCCGTGCTTTAAAA
AAAATTCAGATTTTAAAATATGTTCCTGTTTTCAACTGATTTCTACACAAATACAAAAAA
TATTCGGGAAAGTTTTAAAAAATAGGTTTCAATTTTTTTTCATATTTTCTCAATTTTTAA
AATTCCAATTATTTTAGGGTTTTTTTCAAAAAAAAAAACATGTTAAAATTTGTTCACTCT
TTTTTAAAATATGTTTATGTTTTGAAATTCCGTGCAATTTCGATAGACATGATCATTTTT
ATAAAATTTCTGTACAAGTTTTGAGAATGTGAATATTCTTGTTTTTGAACAAAAGTAGAA
AAAACAAATTTTTTTTGGAATTTTGAATGAAATTTTAAAGCCTGAGCATTTGTTGACAAA
GGACAATTGAAAGAATGAAAAAGAAACATAAAAAAGAAATATAAATAGTGATAAAAAGTC
GGCTTTGCTACAATAAACCAGTCACTGTTATCTTATTTGAAAATAGGGTTCACAAATTAA
AAAACACGGCTTTGAAAAAGTTCATGAGTTTCAATAAAACGAAAAAAAGAGAAAAAGAAG
TACTCCCTCCGTAAACTAATATAAGAGCATTTAGATTACTATTTTAATGAAATGCTTTTA
TATTAGTCTACAGAGGTAATAAGAAGTAAGCCGCGACCTCTTCGGCCAAACGGAAGCAGA
CAAGAAAAAAGTAAACCTAAGACCTTCTCGTTTGGTGGGACAGAGACACAAGAATGAAGA
AAAGAAAACAAATGATGTAAGTATTTACACCAGGTGAGTTATCTGATTGGCTACTGCAGC
CTGTACTTAACAAGGAGGTCGTGGGTTAATCATGTCCTAGCATGCTCTTTTGCAGGTTAA
GGCTGCCCGTCATGGAAGTATCATAGGTAGTATCATGCGTGTCAACTAAACAATTTCGAT
GAGGTGACATAGAATTAAATGAAGAAATAGAGAGTTGAGTATCATATTATGATATCGTAT
CATAATAAAAGATGTGTTACTATGTGTCTTGCATGACAATAAATGAACTACCCTATGATA
TTAACATATAATAATATGCATTACAGATGTGGTATCATACAGTAGTATCATATGCATGAT
ACTANNNNNNNNTACTACCCATTACAACCAGCCTAACAGAAGAAGGAAGGTAAAATGAAC
CCTTTATTATGAAGTCTGTGTATGGGTAGTACGGATACATGCCGCATACCGACGAGCTTG
ACGCGTGTGACGTAATTTTAGAAAAGATTACTATCCTTTATTATGAATGGACATGTAAAG
ATCTTTCCGGTTGATATGTTTAATTATGATTTATCTTCTACTCAATACATCACTAGTGGC
AAGGGCGCGCCCTTGGCACGTCTCTTGGGCTTACATGGACGTACTTATTTAGCTGTTATA
TTTATAAATGTGTCTGTGTGAGTAAAAAAGTCAGAAAACGTATATAAGTGAGAGCTGCTG
AATAGAGAAGTGCTCTAAAAAGATCATGAATCATGTATAAGTTAAGTATCACATCGAATA
GAGAGTGGACACAGTCTATGGCACCATACAGAAGACGCATCACTCATGATACGGTGCGCT
AAGGATCAATAGACCGTGTCCACGCGCTGCTAAGCAACCGCAAAGCCCATGCGACGGGAC
ACCCCACTACCATCTGTGGACACTGACGACACTATCAACATCAAACCACACGGTAGAACA
AGCTCAACATGCAACACCAAAGGATGAGACTAACAGTGAGGGGTCAACACAAACAGGGAC
CACTTGTCATACGCAAACACAAACACACCGCATAGCTGTCTTGTTGTGAGCCTGCACGCC
CAGCCATGCACTACGATGGAGACCGCCAAACAACCAATCGACGTAGTACCCACTTGCGCG
CCATTCCATCACGCATCTCTGCACACGCAACTTGCCTTAGAGCATGGTTAATATGTTGGA
AATATGTCCTAGAGGCAATGACAAAATAGTTATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCATGCTATAATTGTATTGAATGACAGCA