morexGenes - Barley RNA-seq Database

Contig contig_270811

Source Contig contig_270811

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_270811 (4880 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_270811

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_43498	1	1280 bp	MLOC_43498.1	Available	Available	LOC_Os04g44980.1, FRAME:-3, EVALUE:4e-156, 13104.m04501 protein short-chain dehydrogenase/reductase, putative, expressed

CDS Structure of MLOC_43498

Contig Sequence (4880 bp)

>contig_270811 4880 assembly3_WGSMorex_rbca.fasta
TACGATATCTCAATCAGTTTAACACTGCTGAACAAGTTTAACTCATTCAAATAGAAAACC
CCATTGTGCATTGTGCTGATTTTACTGGGCTTCACGCCTTGCCCAGACCTTCCCAAGGAG
CTGCAACGAGTGCTGGGGGGGGGGGTGATGGCCTTGCCGGAGAGCATGGGTGAGGAAGCA
GGCTCGGGTGACGGTGCAAAGAGAGAAAAAGTGGATGTACTAGGGCTGGGACGCTGGCCG
GCTTAAATAGCCGGATTTGGCCTCGGCCGGTGAGCCAAAGCGGCGTCACGCGACGATCAT
ACCGCAGTGATGGAGGAGGTGTCCGTTGAACCGCCGAGTTTTCGAGCGAGTTCACGTGGG
ACCCCATCGTCAGTCCTATGTGGCGGGCATGCCCGGATGCCTCATGCCCGTCTCTAGATA
TAAGAGGTGTCGGTCAGCTCGAGCGTTTGAGGTCCGTTTGAAACATCCGATTGAATTAAA
ATTTTGTGATCTATCAATGACCGTGCAGCTTGGCCGGACATATGAAACGGGGTTGAGACG
TCCGGTTGTAGATGTTCTCAGATCTTCGAGCACAGGCGTAGTCCAAACGAACATACCTGC
TTTATTCTTCAACTCACAGATTATTATCCCACCACAGATTGGCGCAACAAAACAGTAGTG
CTACAGATGCTTTATTTTTTCACACGAACGATGCCTCCTCGCCTTCGGAGAAGTACTTGC
CGGTCGGCCCGCCTTCCGGCAGCAGTGCAACGCCAGTGATGTTCCGAGCGCCCTCCTCCG
GCGTCAGGATCCCGGAGTTCCTGGTGATGTCTGTCTTCACGTAACCGGGGTGCGCGCAGT
TGACGCGCAGCTCCGGGTGCCTCTTGGCCAGGATCCTCGAGTAGGCGTTCATGGCGGCCT
TGGCCACCTTGTACGCCGAGAACTCGGCCGGCCACCCGTGCGCCTCCACCGCGCCGGCCT
CGAAGTCCTTCAGGAACATGGCCAGCAGCTCGTCCAGCCTCTCCTCCGTCAGGCTGTCGA
CGTCGTTAAGCTCCTTCTTCAGCTCCTCGTTCCTGAAAAACTGCAGCCCGAAATGTAAAT
CTCACCGAGGACGTATGATCTCGTCTTTTGTTGGAATTCGGTGGTGATCCGTGTCTGTGG
TACTTACGCTGAGCAATCCGAAGTTGGAGGAGACATTGACGATTCTTCCGTCCGATGAGG
ATCGGAGCAGGGGCAGGAGCGCCTCCGTCACCCGCTTTGTGCCGTAGTAGTTCGTCTGCA
GGCCCTGCTTTGCAGTTTCGTACGTCTGTCGACAAGTGGTCCACATCCAATCCATCCTCT
GGCCCGCATCCATGCCATTGAACTGTTGCAGTGTGAATCCCATGGCGGGAAATGACATTT
TTTTCAGTGGCTTACCGACTGGTGCATAAGGATAAACTTAAGATTATACTTGCAGTGTGA
ACCCCATGGCGGAAAATGCCATGTTCTCAGTGCCGTATATACCAACCGGTGCTTTAGGAT
AATAATTTTTAGATCAACACTGGTTAGTTAATCAAGCGCATGGCGAGCGTTGTAGGCAAC
CCCGAATCTTTATATCAACGAAGTCGACTAATCATTCGCGCACATGACATGACATGACAT
GTTGGTGGGTCAGCAATAATCTTATACGCTCCTGAAACATAATTGCGCAAATTGTCTGTC
CATACTCTGAAATGGCAATCTTATTTCCCCCTTTTGGGGAGAGCATGGTACATTAGTATT
TTCCATTTTCTTAAAAACGAAGAACACATTGAAACAGTGTGATCTTGCCACAATCCAAAT
AGTCGAGAATATAGGTTGAAATGGCGTTGTTACCGTTTCATCGCCGGGAATCAAACCATA
AACCGGGTTGATGACATGCTCGATCCCATCGGTAGCAGCATTATTCACCTGCGAATCACA
CTTGTTATTAGTCACTTGCCATGCCAAGGATCAATCAAACTATTGTTTCGTTATTTTGCT
AGAAAAAGGTGTAATACCGCAGTCTGCTAAACAAGATTTTTTTTCTTCTTCTCCGGAACA
GATAAGGTGTTATACCTGTGAATGCTGCGGTCTACTCATTCACAGGAGTTTATTTTCAGT
TTTTCACAGCATACCACAGATATTGTTCCCTCTACTGAACAAGCTAGAGACAAACCTCAG
GAACAGTACGACAGCACAGACAAATAAAATGTCCAAAAGTGGGGGAAAATACCAGGATGT
CAAGCTTCCCGAAACGGGTCTTGAGGAAATCTGCCAGCCGAGCGATGCTGGAAGCATCCG
TGATGTCTAACTGATGGAAAATGACATCCGAGTGGCCCAGCCGTTTGATCTGCTCCACCG
CCGCCGTTCCCCTCGTCTCGTCCCTGGCCGTCAGAACGACCGTGATGCCGCTGCCGGCCA
GCTGCTTGCACGCCTCCAGCCCGATCCCCTTGCTCCCGCCGGTGACCACAGCGATCCTAG
CAACGCCGGTACATAGCGGTGGAGTTCAGATTTTAGCGAGACTGATCGGCATGCAAAAAG
TACATGAAGACACGGCCTCTAGTATGTACCTTGTGATCGTGGGAGTGGATCCTTCCATGA
TCAAGCCGTCAAGCCTGAACTCAGATCGGAAAGTGTGAGCTCCCAGCCACAGATCAAAGC
CGAATGAAAGAAGGAAGGAGTCGGTGAGCCCGCGTGCCCGTCTAGCAGCCGATGTGGTCA
GGTGAGGTGGCGTCGCGAGCTGGAGCTGGCAAGGGTGTGGGGAAGCGAGGTGGTCGGGCC
GCAGCTTTTGTAGAGTGAGAAGAGATGAGATGTGGGGGCGAGATGGGGATCGTGGACCGG
CCGTTAACCACTATCGATTCCACCTACTTCGGCAACAAGGAGTATTTACCACTAGTATCT
TTATTCAGCAAGTACAATAAAGCTGAATCAAGTAGCTATAAGAAATAAATTAATATATTT
TTGTTTAGTTAGAGAAATTAAAGAGGAGAGAGAAGGTAAGCGGGCTCTTAGCTAAGAGAC
AGCTCTAGCACGTGCTCCTAAGCCTTTTGTGAGTATGAAAAATGGATTATATAATAAAAA
AAGTAGTACATTTTTACAATGAACTATTGTACATGTTGGTTATAAAATGAGCTATAGATG
ACATGACAATGGCTTATAGCCAGTAGCTGACTATACTATTGTACTTGCTCTAATAAACTA
GCAGTACGTAGGTGATTACATCGCTACTCAGTCATTAATACAAATATAATTTGCAAACAA
AAAACCAAATCGATTTGGAAATCAAGCCATTAATATAATTAATTATACAAACAAATAATT
AAGTCCATATACTCCCTCCATCACAGTTTATAAGGCATGCACGTGTATCTAACTCGTCAA
TTTGACTTATATAAAATATATTGTTTAACTAAAAAAGATATCATTAGAAAATAGAATATC
TAAAGTTTTTAATGATATATTTTTTATAATATATGCCTCTTATTAAGTTGGTCAAATTGA
CGACCTAGATACACGTGCCGGACTTATAAACTGAAACGAAGGGAGTAACTATGATTTTTT
AGCCAAATTAATTATGAAATCGAGCCATTAATGTAATTTATTAATTAGTCACAAACTTAA
TTTAGGGTGCAAATAATTAGTAGTAGAAAGTTTTAGAAATCATTTTAATTAACACACATA
ATTAATGATATCATCTCCTGCTAATATATAAACAAATCAGTCATTAATGTATGACTCCAA
AGTTTGTCTATTTTATGTAAACAATTCAGTCATTAAAGTGATATACCAATTTTGAGTCAT
AATCATCTACGCTTGGAAAGTTTGTCTATTTTTTAAACAAATTAACGCATGCATCACTCT
TATGGAAGTCCATATATTTTATTTTGTAATGGTTATCTTCACATGGTTTCGTTCGTTCGT
ACCCCCATCCCATCGATTGATCCAAGCCTCCTCCCATCAATTTTTTATGCCACCGCGTGT
AATACCTGTGCCCCGTCGAGGGCATTTTAGACATTTCATTTAGGGACGTATAAATATTTG
CCGCTCCCGTTGTGGTGACCTAGCACGCGCCTCCTCCCGCACTCGTGCCCCTCCCCTCTT
CCTCCCGCACTTGCGCCGCTCTCTCCTTCCAATCCCTAGCCCAACACTGCTCTCTCCGTC
GTCCTCGTGCAACTGCTGACGTGCTCTCGCATCTTCTCCCCTTCCTCTCCCACCCTAGTG
TTCGCCGCCACCGCTCCACTCCCCGTCGCCCTCGCGCCGTCATCCCCGCCTCCTCATCCC
GTGGACGCAGCTCATGGCACTAGGGCCCGAGCGCATGGGCACCGCCGCGCTAGCAGAAGC
TACAGATCCCGCTCGATGTCGTGCTCCCAGATGGACGGCGCATGGGAGGCCAGCCTCCAC
GACGTGCTCCTCTTTCACTCCCTGTCGCCCTTGCACCGTCCTGTCGTCTCCCCCTCCATG
CCCCTTGGGTGCTCAACAAGAGGAGAGCGGCTCGCCGTCGGCCCTAGCGAGAAGTAGAAG
CAGAGCAGGACGATGGCAGTGGGAGTGGTGCGCCGCCGCCTCGCCCTCCCCGACGTCAGC
GCCCCTCATCCTCCGAGCTATAGCCAGCCCATTGCCGCCATCCCCAAGGTGAGCTATCTG
GGCTAGGGTTCACTGCAAAAGGGAACAAATCCAACTCCCATCCCTCCCTCTCAGCAGCAG
TGATTAGATTTACTCACCCCCTTTGGTGAATGTCGGTGGATCAAATTTACGGACCGCATG
TGAAGGAGGATGCTGCTTTTCTACATCAAAAACATCAACTCGTGATGAACAGATTGATGT
GTCCCTGCATCTTGTTAGTTAGGCCCTGTTTGGAACCANNNNNNNNNNNNAATCCAGTTT
TTATAATCTATTCTATCTCC