morexGenes - Barley RNA-seq Database

Contig contig_270803

Source Contig contig_270803

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_270803 (4629 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_270803

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_43496	1	1702 bp	None	Available	Available	None
MLOC_43497	3	2020 bp	AK251315.1	Available	Available	None

CDS Structure of MLOC_43496

CDS Structure of MLOC_43497

Contig Sequence (4629 bp)

>contig_270803 4629 assembly3_WGSMorex_rbca.fasta
CCCGGTCACCCAACTACCACCATGAGACCGGTAAAGTAGAAAAACTATCAAGGGAAAACA
TATACCTTGCACATAATCCACTTGAGCTAGATGATGATGATATTGACATTCTCAAGTTGG
ACCACATTTCTTGATTGCGTTGGATTGATGAANNNNNNNNNNNNNNNNNCCCATACTCCA
CTATGGGTGAGTCACTCTTCGGCACATCTTAACAAGTCCATTGTCACAATTATGGACGAC
AAATTTCAAGCATGATCCCTTCGTGATGCTCTACTTGAAGTTGCACACCGCAAACTTGAT
GACAATCACCACTTGATGTCACCCTCCATGAGTTGTATGAGGTATTCCTCTTGACGCAAG
CCCGTGAACACATACCTAACCCCACATAGAACTCTCACATAGATTATGGATTAGTACACT
AAGCGTAATGGACAATGATTACCATANCATGGGATCACTTGATCCCACTTGGTGCATCTT
GTACGCTTTGTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCTTGATCAACCTTGT
ATCTTATGTACTCAATGACCAATCTTTGGATAAAACCTTACATAGCACCTTGGTCACCAT
ATGAACTTCTTAAAACCAACAAATGGACTCCAAGAAGTGCCTATGGACAAATCCTTGGAA
TATAAATTAAGGCAACCATTAGTCCATAGAGGTTGTCAACAATTACCAAAACCACATATG
AAGAATTATACTCTAACACTAAGTACAAGGGGTACTAATAGTGCACCATCGGGCCCCCCG
GGCGATGCGGACGCAGCTGGCACCGATGACTAGTGGGATGGACAGTTATGGAGCCTAGCC
ACCTGGATCCAGCAGGAAGTCGAGGAAGGAGGAGTCGGAGACATAAATGATAGAGGAAGA
TCACCGCCGCCCAACCGCCACACCCTGCATCAAAGAGAGGCACCCCCGCCTAGATGCCAT
GCTCGCTCCATGGTAAATCAAACGAGGAGGAAGTGGGTCCATGTCGTAGTCAACGTCGAA
ACACTGGCGGTGGCGAAGGGGGGTGGCGGTGGCGAAGGGGAGGTGGCGGCACCTAGGGTT
TCGGCCAGTCTCTTACAGGAGAAACGTGGATGTCACGTTATCGCCGGTCAACAGTCCATG
TACCACTGACATATTCATTTCATGGAGGATGGATTAGAACTCAAATAAGTGACAAAAGTC
AAGATTTGCTTTTTACAAGTTTTTTTTTTCAGCAAAAACTTGTGGATGCTAAGTCTAAGG
ATGATGGTAGAAGCTTTTTACATTTTGAAACGATTGCGCACTTGGAATACTTGAAAAGTT
ATGCATGCAATTCAACAAACCAATACTCCCTCAGTTTCATAATAAGTGTCATGGTTTTAA
TTTCGAACATGCTCATGTATATAATTTTAGGGCACCGACAGTAGAACAATCGTTGCACAG
TAATTTACGCATCAAAAAATATGTAAAATACAAAGTAGCTCACAAATCACACGGTGGGAG
TACGTACAAAGGAATCGCGGGCAGGCACGGACGTAGGCAAAACCATCATATTTTTGCAAA
GGAAGCAAGCAACCTCAACTCCTAGGGTGATGATGGGAAAGTATTCCCTCACATTCACAG
CAAACCCCAAGGCTGTAGCCCCTGGATACCATCAGCTGCTAGTGGGCTACCGGGTAAAAA
AAAAGTGGGCGCATCAAGATTGAAGTTGCAATCCGCCTAGGATTTTGTGTCATGCAAAAG
TGGGACCCATCTCACATGCCCCATGCACATGACAACCACTTGTCTCCTACCACCTCTTGC
ATCTCACCATCATCTCCGTTTACCCCCGTCCCCTTGTGAGTTGTGACTTCTCCCTTTCAC
CACCACAGGTTTTTGACAGAGCTACTGCTCTTCCGGGTCCCAGATAGATAAGCCACAATG
CGATGGAGAGAATTACTATACTATAATAACAAGTTTTTACATAGGTTCAGTACAAGGCAA
AAAGAAAATCTACATAAGATGAAAACATCCATCAACCGACAAGGAAGTCCAGACTTACTT
TATACCAGACGGTGAAAAGGATTAATTAAAAACATAAAAGGTTCAAAAAAAGAAAAACTG
ACCACAAAAAAGCCTGGTACTTTCTTCAAGCTGCTGCCCTGGCCATTTGCTTTGGTCAAG
GGCATTTTGCTGCCATGGCACCCCTCAACTCATGCAGTCCCTTCTCCCCTTCTTATTTGT
TTTCCACTCTAGACCACCAAGGTTCTAACCTCCTTTTTACATGACGGAGCAGGCGTTTGG
GTTCTCGTCGCTGAAGATCTGCGGCGGGTAGGGTGGGTAGGCCGGCGGCGGAGGGTAGGC
GGCGTATCCCGGCCTCGGCGGGTAGTACCCTCCCGGGAACGCAAACTGAGGGTAGTGCAT
GTAGAGGTTGGCTGCTGCGATGGCGCCGGGGTCTTTCTCCTTCTCCTTCTCCTCGCCGCC
GGCGCTGGCATCCTCCTTGTCTTTCTCCTCTTTCTTCTCATCTGATGCGCCATCCTTGTC
ATCCTTCTTCTCCTCCTTGTCGTCCTTCTTCTCCTCGCCGCCTTCCGCTGCCTTCTTTTC
ATCCTTGGCTTCGCCGTCTCCGGCTTTCTCGGCCGGGGCAGCCGGCTCGGACTTGATAAT
GGCTGCATGCTTGCCGGTGCGCTTGTGCACGTACTCAGCCAGCTTGGTCTCCTCAAACAC
GCCCTTCACCGTCACTTCCGAGGCCTTCAGGTCTGGCTCTGCAGATTGCACTCCTGCATA
ATTTCGAACCAAAATCATCAGCAATACTACACAGCAAGTATTACTGAGCTCAACGTTCGA
AAAGTATTACTGAGCTCGAGGATGGACCTAATCTTGTGTGATTTTAGGCAGAATAATTCT
TATACAATCAAGATTAATCTTGTCACGGTATATAGGCAGACAGGTAGGTGAAGGAGTGAA
TCTTATCTGCACCACAGTTGTGCATCTTTTGCAAGAAAAGGAACTACACGTACAAGGCCC
ACATTTTGCCTTTGTTTCAGCCATCCACCTAAAGAGGGAATCCCTCTCTTTTTCATCATT
GCAACAGAGAAAAGATTTGCTTGACCTTTGCTCAATCACTAGGTAGATCCTAAGTAATTC
ATCAAACATGAGACATACTGGTACACTAATTCTAGGAGGACCTAGTGAAAACAAATACAG
TAGTGTATAAGAGAAAGGCCATAGATGTTTTTGTCCTGATGAAAATGACGCGAGAGAGAA
ATGAAAAAAGGACAAGCAATCCCACAGCAGCCCATTACGCACCTTTCATCTTTTCGATCC
TCTTCTTTATGACCTGCGCGCAGGCCTCGCAGTGCATGTGCACCTTCAGCACCACAGAGA
TCACCGGTGGCTTCAAAACGAAACATCATCCAGTCAGTTTTGCCAAATCTGAAATGAAAC
GAAAATTACCATACAGACTACTGCATTGCGTGCATTTGTTAAGGTCCTTCACCTCCTTCT
TCTCTTCAGGTTTCGGCGGCTCAGGCTCCTCCTTCTTCTCCTCTTCCTTTTTCTCCTCCG
GCGGCGGCGGTAACGGCGAGAGGAGCTCCACCTTGCGGCCTGTCTTCTTCTGAACACGCT
CGACCACCTTCATCGGGTCGGCAGCCGCCTTCTTTCCTTTCACAACCACCTTGTGTGCCT
TAGAGTCGGCAATGACGTCCTCTACTCCTGAATCCGCACAAAAAGGTTTTCAGATGTGGT
ACTAGGTAGAACAGAGAAAATGAATCTTTGAGCCAAAGAATCTTAATTTTTCCCTTGATA
GCAACAACTAGTAGTGCATGGAGAATATGCAGAGGTGCTTGGAACATTTTGAGCAGTATT
TGGAGATGATTGAGGAATCAGCTTAACTTTTGAGGACATGTGGCCTCAAGGGCATTGTAT
ACTCAAGGCTGTCATTCTCTTGGAATGTACTCCAACCTTTTGGAGTGAAAAGTCATCCCC
CTCACAATTAATCAACCACTAGATTCATGTGCGGCTGATGAGAAAGGAGGAGGATCCTAT
TAATTAGGTGAATCTGATTATTAAAAAGCTTAGCCCACCTATTGACCTAATCCTTACAAT
ATCACTTAATTGGACATCAGAACAGCACAGAGAAAAACACAAAATCTGGACCTTTTTGAA
AAAAAATAAGGAGACAAGGAGAAATAGTAAACAAAATTAGAGCAAACCAACCACATCATC
ATGTCTCCTAAATCTGATGACCAAAGCTTCCTTCCCATAACCGCAAGGATGACACAAGTT
GACCACTAACTATGATGATTCGTGAATCAAGATACACTAAGCACGCACTCCCTAATAAGA
TCAGTAACAAAAAAAAAGTGCTGAACGAACTTGATAAAACTGTCCCTGTGCTAAGGAAAT
CAAACCCACGTGACAGCAAGCATACTAGTTCAAAAAACGAAAAGATCTTTTTTTCTCAAA
CGAAGACGAAAAGATTTACTCTGACGGCGAATCCTGATGCAGCAAAGCGGAGGAAACTAC
GGGGCAGGGATTAATTAGATTAGATGAGGCGCATTACCATCGAATCTCTTGAGGATTTTC
TTGACCTTCCTGGCGCAGCCCTCGCAGTGCATGTAGACCCGCATCACGACCTCCTCCGGC
GGCGGCGGC