morexGenes - Barley RNA-seq Database

Contig contig_270172

Source Contig contig_270172

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_270172 (2384 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_270172

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_43415	3	1429 bp	AK377048	Available	Available	None

CDS Structure of MLOC_43415

Contig Sequence (2384 bp)

>contig_270172 2384 assembly3_WGSMorex_rbca.fasta
CCCGAGTCGCCCAAGCGGGGGCGACGTGGGGGCCAAATGGGCCAGGTTCCTCCATCAGGT
GAGAGCGTCATCTCTTAAAAAAATTGTTTTGCCTGCCTAAATTGGGGGGAGAATTTCACT
TCCCCGGCCTCTGCACCAACTATGGATGCATACGGCCTTTTAGGTATGAGTACTAGGATT
TTTAGTCTCGCTTACACACCAAGCCTAGCATAATCCTCAATAAATGAGTGAGTATCAGGT
AAGCCTAGTCCTCAAGAATAAATAGGAACCTAAATTCGTCTCCGTGAGGATTCAAACCGA
GGTGTTGGGTTTGTACATCCACTCCCCCAACCAGTTGAGCTAGGCTCACTCCCCAAAAAA
TGACATTAGTACAATGAGGTTTTGCAAAACTCACTTTCGTTTGGCTTGTATGTCTCTGTT
GAAATCAATGTCAGGTTCACAATCCAAGACCAGAGCAGGAACCTAGTACATAGCAAAAAG
TTTCAAACACCGAGATGCTTTAGAATTAGATAAGCATACAAAAGCACGTGAATATATCTA
CCTTTTGGATGCTAGAATGCATGTGATCTCCTTCCAGGTAAAAGACACGATCCCGTATTC
CTGGAGGCAAGGAGCCATCCATATGCGTGGGCAGCTGACTAACTGATAATACACCACTGC
CTCCTCCTTTCGAAGGAAATAGCCAGCTCTCATGTTTCTCATGCAAACCTTGTAAGTAGT
CAAGGCTAACACCACCTTCCTCTGATCTTTTTCGGAGCATCATCCTTTTATGGCAAGTAT
CTGGGCTGGCTCTTAAGTAAATAAATCCATCTGGAATAAGGCCTGGGAGCGATGACACCA
CTGGATCGAACCAGGAATCATAGATGCTGATCTCCATCTCATTCATCCAGTTAGCTTCAT
GAACAGCACGGACAAATACCTGGTAAATATTAGAATTTAGTTCCACAGCATATACCAGTC
TGTTGAAGCAGGAAAAATAAGGAAACACTCGGTTCCTCTATGAACTAGCATGAGCAAGTA
AGATAGACCTACCATCCTGTCACTGAAAACACTTCTTTCCATTAGTCTGAGAGGTTTGAT
GCCACCTGAAGATTCCCTTTCTTGCATAACCCTTGTCACAAAGACATAGTTCTGGAATGT
GTAAGCATATCTTTGGGGCTCGGCATAGAATGCATCCAGTATATTGAAGTGGTCAGGGCC
GACATCCTGCCACTTAGCAACAGGTTCAGGTACTATTTCTACAAGATCACGTAGTTCAAT
AGTCTCATTAGCTATTCTCTGGAGAAAGGTGCTCTTTCCAACACTGATATTTCCTTCCAC
ACAAAAGGTTAGCCTCTTCTTCTGAGGAGGCTTGGATGAGTTGGTATCCTCTAACTCCTC
AACAACACTCTCTTTGATGAATGAAGTTATACTCTCAGCATGATTCTTATGTATGATGCC
AACTGAGCTCTGCAAGAACTCAACCATCTTCTCACTAGACTTTCCAAAGAACTGCAGATG
CATGTAAATTACCAAATTGTCAGTATAAGTTAGGAGAGCAACATTCAAAAACAGTAAATA
ACATATATACTAGTATAATGCAGCCAACACAACAAACAAAATAATAGAGTAGCAGGAAGC
TATAGTATCGTATGCATCATGCTGATGCAGATGCCGGAGGCAATCCTCCTTTTCTAAAAA
AAAAAGCTATAGTATCCTATTACCATTGTTAGCTTCTCACACCACTTGAGTTATCAAAAT
TCTGTCCCAGAATGACATAAATAACTTGCTTATCAGAGCATGCAAGAGCAAGCGACAAAA
TCAATCTAGAGTTCTGAATTTCTGTCTGCCAAGCCCAAAATAGAAATAAAATGCAGCAGA
GTTCCCCTGACTATTACAATGTGAATATAACGAGAACTATTGGCATTAGCATATCAGAGT
ATCAGCTTGTGTACTTTCAGAACAATCTACACGAGACACACAGATGTAACAATACTTGCA
CGAGAGCTGTTGACCAAAAACTGAAAGCCTGGAGAGCTGGCCACATGTAACACTTTTTGA
CTTGTGGTAAGTGTTTGTGTAACGATTTCAACGTCGGTGAACAAGAGGCGCGACAGAAAT
GCACGCTGTCGGGTAGCATTTCCAGCAACCCGACCACAACCAGGGAAGCGCGCACACACA
CCTTATCCCTGTAGAGCTGCTTGAGATGCGCGACGCCCTCGAAGCCGTTGTCGACGAGCT
TCCTGAGGTTGCGCGGGCCGACCCCGGGGATGGCGAGGAGCTCCCCGCTGCCGGCCACGG
CGCCGACGCCCCGCAGCCTCCTCTCGGCCACCGCCCGGGGCCCGCCCCCGCCCCGACTCC
CCTCCTCCGCCCCCCCAGCCTCCCGACCCCTCCCCGCGGCCGCC