morexGenes - Barley RNA-seq Database

Contig contig_270148

Source Contig contig_270148

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_270148 (3693 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_270148

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_43410	1	2586 bp	MLOC_43410.1	Available	Available	LOC_Os01g45910.1, FRAME:-2, EVALUE:0.0, 13101.m04713 protein plastidic ATP/ADP-transporter, putative, expressed

CDS Structure of MLOC_43410

Contig Sequence (3693 bp)

>contig_270148 3693 assembly3_WGSMorex_rbca.fasta
TAGCTGCCCTGCCGACGTCCGACGAGCGTGCTGGTGAGGATCTAGCCGGGCGGCGAGGTG
GCTTCTTGGTCGGGGCGGGCTGTGTGTGGGGGTGTGGGGGGAGGGGCGCGGGAGTGGGAA
GCAATCGGCTCCCTAACGGTAAGCCGACGGCGACGGGCGAGTGGGCGGATGTGGAGGCGC
CGACAGCTGGCAGAGTCACCGGAAAAATGGGCGAGGCGTCAACGACGAAGGAGGCAGGCG
AGGGTTGGCGCGTTGAATCGCCTTTTATGTCCGCGTCGGCCCAAACGGACGACGGCGGAC
AAAATGGGTCGCCCCATTGGAGTTGTTCTTACTTGCTCCTGTTTAGAGTAGCACTTCGAT
TCCAGTGGAAACGAAACCAGGCACCAATGACATTTTGCAGAAACACAATAGAATTGCAAC
AATGGTTGAATTTCCACACCTGCTCACCTAGCCTTCCAGGCCAGTTGTCAAAATTTGCTT
ACATTACAAACTAACCAGCACCTCTTGATGCTGCTCACTGTTACAAATTTGGAAGAAATC
GCCAATCGTTCCTTCATCATTATTTCTGCTCAACATAACCAATCTCCTCCTGCCTATGGC
TTCTCCAAACAAGGTTGACCGGTCTATTGAGCTGGAGATGAGTTTGATGGTGAGTTATCA
GTTCCAGTTGTTTCAGTCGCTGCTGTTCCATTTGATTGCTCCACCAATACATCAGTAGCC
GCCTCGGATTCCTTGGGCGTTGCCGTTTCTACTTTCTCTTTTGACATCTCCTTTCGGAGA
TCCTCTTTGGCCAAGCTTGAGAATTGCTTGTCCAATGATCTTGCCGCACCTAGCCATGCA
AGCACGATGACCAACAGTATACCGCCAAGGTAGGGCGTCGAGTTTGCCAAAGAGCCAAAT
ATCAGGATCAGAAACTGTTGGATCAGCGCACCACCGGACTTGCCCAATGGGTTGCAGACA
ACATCAATGGCTGCCTTTCCCTTCAACTGCAAAATGATCGAACAAAAGTTAGCATGTGCA
GCATAACAATGGTGCAGTCAGTGACTTGTTTAGCTAGCCAAACATGGTGCTAACCAGGAA
ACATGAAGGAGAATATGGTATGATGTTTACCGGACTAGGCTACATGTGCACTGATCTTAC
TGCTCACGGCAAGGAATTGCACTTGTTGAAAGTACTTATAATTAAGTCTACAACAAATTC
GGCAGCAGGGAAAAACAAGTAATGTCATTATCCAACTACATGACCATGCTGAGCTCTGTA
TGAGATTTAATATGTTTAATAAAGGTGTATCTCAACTGATAATTATGTAGTTGCCATACT
AAATTCCTCATCACAGTAATCGATAATTATGCGTAAATTATTTACTAATATTTACATATA
GTCAATCAAAAAATTGCTAGAGTAAACACATGCGGAGTATCAAGCAACCAATTAACATAC
ATGAAATACCATTAGGCAGAAAAGAACATCAGTAAATGAATATATATTTTCACAGAAAAA
TTTACCAAGGAATCACACAGATAAAAATGGAGTCTGGAAGGATGAACAAACCTTCATATC
TCCATCCAAAGGAATATAGGCCATTTCTTTGCACGGGTCGAATAAACTGTACTTTGCACT
CTTGCTAAATATGTTCTGCAGGGCACCCACATAAACAGCCGCAAGAAGAGGGGTCATACC
CCACGTGGCAAGCAGGGGAGTCAATGGTTGCCCAAACAAAATCAGAGAGAAGAAACCAAC
GCCAGTCACCAACAAAACTGTGGGGGTGATCATGGCGGCTACACCCCAGCCAAATCTTTG
GAATATAATCCGACCTAACAGCATCATCGTGAAAGTTGCAATTCCAGTTGCAGTAGAGAA
ATCACCCATGAAGGATGAGTACTCGTTTGGACTGGGGAACTGCCAAAATGAATAAGGAAC
CATTACTGCAATGAAAAGGTTAAAGGAGTACGAGGAAAGAAGAAAAACAAAAGCCGAAAA
AAATTACCTGTGCCTTGAGCTTCGATTTCCATGTGACTTCCACAAGATTGATACTAATGC
CGTATGCAACAACTAAGGTAGCAAGGTCCCTCACATATTTTGAAGAGATCAGAACTTTCA
TACTCTCTTTCATGCTAAGCTTAGGTTTGTTCTGTTGAAACAATGGCTATCAGAATATGT
AAGTAGTAATAAAAAGGGAAGCACATTCAAGTATTCTACTGACCTTTTTCTTCTTGTGAT
CAGATTTTGGAAGAGAAGGGTCATTCAAAACAAGCTTGTTCACTCCCCAATAAATGGAAG
TAATGACAAGCCCAAGAAGTACCACTATGCCCATCATTCCTTTCAAAGATACCTCCCAAC
CATCAACTCCTGGACCCATTGTCTTCCGCAAATTTGAGAAATACTTCACAGTACGCCCGG
AAAAGATAAGGGCAATATTTGCCCCAAGGCCAAACAGAGGGTAGAACTCTTTTGCTTCAT
CAACTGTGGTGATCTGAAAAAGATTTAATCAACTCAACTGGAGCACAAAGGGCTATCATT
TAATACAAAAACTGAACAAATATAAAATAAATATTGAAACCCAAAATTCCATATGGCAGG
CACAAAAATTACATGGACAAACAAAGCCATCACAAAGGACCCTTTCTTTAGCAATCTGCC
TTCCAATGGACAGCAATACAAAGCTACAAACACCATGGCAAACCTTAGGCGCAACAGTGC
ACCAACAACTACTACTGTGAGCTCCTACCATTCAGATACCCCTCCCACCCCACACCCATG
TTGCTCGCCTCTGGCAGGCATTACGATTGACTAACAAGAGCTAATGGCAAAGCAACTGTG
GAAGTGGAAACTAACCACCAGATCCTTCTACGATAAAATACCGGCCAATCCTTATGTTCA
TTTTGTGGAGTGTCTGGCTACACCGTTATGGTATGGTCTTCGGATACATAACTTCCTCAC
TACCACAGTAAAAGTGCAGGCTCATAATCTCTATTTTCTTAATGAGCTCTGAATACGCCC
ACTTAGGAGGTATTTTCAATAAAACTTACTGCAGAACAGAATGTTTCAGATCTGAAACTT
AACAAGAATAACTATCAAATTATGATAACGGAACCATTGAAAACATACAAGTGTTAAACG
TGACAATGCAATGCTGAATATTTCCATACACTATCTTTGTGTTCTCCTTCTGTAATTTTA
TTGATTTGTGTTCACTTCTTTTTAGCGAGTTTCAGAAATGCTGTCCTGATTGTCTCTCTC
AAAAGATATTGGACAGACTCAGTGCATAGAAGCTCCCACGCAAGGTGGGGTCTGGGGAGG
GATTATAGGAACCTAGTCTTACTCTCAAAAGATATTGCAGCTAGTAAAATATCCGTTGAG
CGCATATCAAGTATGAACAAGGTACCCTTCCATTCTGGAAGAGAAGTAGTCATAATGCAA
AAATATACTATTAGCTTTGCTCAAGACTAAATTGCTCATAACTATCTCAGAAGGGGTTAG
AAAGTGCGAACCATATCAAGCCATGTGTTACATGAAAAATATATTGACAACCAGTTGATG
ACTGAAAACAACTCAATCATAATTCAGGTTGGAAGCTATCAACAAATATGAACTAGCCAT
CAAATTATTATAACAGAACCATTGAAAACGTACAAGTGTTAAACGTGACAATGCAATGCT
GAATATATCCATACACTATCTTTGTGTTCTCCT