morexGenes - Barley RNA-seq Database

Contig contig_269835
Source Contig contig_269835
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_269835 (5793 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_269835

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_43373	1	445 bp	AK251161.1	Not available	Available	None
MLOC_43372	1	655 bp	MLOC_43372.1	Available	Available	None
CDS Structure of MLOC_43373

CDS Structure of MLOC_43372

Contig Sequence (5793 bp)

>contig_269835 5793 assembly3_WGSMorex_rbca.fasta
GGGACTGTCGGGCGCGGGGGGGGGGGGACTCTAGACTAGTCGACGCGAGTTAAGCAGTAG
GGAGCAGACCAGCAGCAGCCGGCGGCAACCAGCCAAGACCAGGCCACCAGGGGATGGGAG
GAGCAAACAGAAGCAGCAGCAACCAGAGTATGAGCGGCAGGCAGCAGCAAGCCAGGGGCG
GTGGTGGCAGCGGCTGCAGAAGAGGGTTGGGTCGGGGGGAGGGAACTGTTCGATCTAGGT
TTACAGAGGGGGATGGGCAGGCAATATTGGCCCAGTAAGGCCCAATGAAACCCTAGCCTG
CCTAGCTCAATCTTCACCGTCCATCTACTCTCTTCTATCTCTTTCTCTCACCTGCTCTCT
TCCAGCCTCCAGGCATGCATCGACAGACGCAATGGCCTTGCTGCAGCTCCTGTTCCACGG
CTTCTCTGCCTCGGTGCCTCCACCCCTCCCTCTCCGCCTCCCCCCTCCTTCCCTGCTCCG
TTTCCTCCGCCAGGATCGTCTTCCATAATTCCATGACAGATCGATCGTGTCGCTCGACTC
AAAAACCGCGACTAGTCGAGGCTAGTCGCGACTAGTCGATCGAATCGCTGGACTCATCCA
ATGATTCGAGTCGACAGGTTGAGTCGACCTTCATGTAACAACTCGTCGACTAGTCGATCG
ACTCGAAAACAGAGCCTGAAGGACTGGAATATCACCAAAGAACTAGCTATCCTCGTGCCA
AAACCATGACTAGGTTTCGAGATCTTATTGGTTTCCACTCTAGCCTACCCCAACTTGTTT
GGAACTGAAAGGCTTTCTTCTTGTTGTTGTTATCACTATGAATGGTTTGGGCAGTGGATG
ACCATTAGAGCATACAAATGTAACCATCAAGTGATACAAGAACATCTCAGAGCTGCATCA
CTCAAAATAAGTCATGCTAAAAAGATCATGGATATGATAATGTCAATATATGAAAAAGGA
AAAATGGTCATTGTACTTACACCAACAAGAAAATGTATCCACATTGGCCCTTTTATGTAA
CGCCGAACAACAGGCATAGCTACATAAAAAAAAAAATCCAAAGTTAATGCTAATCTGAAG
ATACTATTATTATCTATATTAATTGTATAATACTAGCATAATTAAGTAGTTGGCAAAAAA
AGCTAACTGATTTCATTCTAGATCCATTTGCAAAAATAAAAGCAGGCAAATCCACTTAAC
GTGAATAAAGTAGCCAATATCATGTGCAATAAATGGAGAAAAGAATTCCATGCATGTCAG
CAAGTCCCGGGAGGTGCTTTACAAGAAAATAAATAATCATTTTTGATACAGCAACAAGCT
ACATGCATATCTGGATATTTTCCCGGGATTTGAAATGCTATTGAGGATCGCTATAACATA
AATAACAGATATTGCAATGCCAACTAGCATCACAACTAAACAAACAAGGTGATGTGCTGC
ATAAGGAGTTATAGAATCTCGAACTAACTAAACTATATATAATTCAGCCAACACATGATG
AAGAAAGCAAAACTATTTGTCACAACATAAGATATCAATTGTCATACAAATACACCAGCA
TGTGCTAAGTAACTGAAAATTTAGAAGAGCTGGATGTATCAATCAGTCATTGATCAAAAG
GGTAGCCAGCATATACCATGATTAAATGCATAAAACGCGCCTGCAGTACCCCCAACAGCG
GAACCAATCTGTTTCAATATGGACATATATATATATTAGTACACGAGTGGAAAGCAGAAA
ACAAAAGGCAATGCTTGGAAAGTTTCCAGTTTGGACTTAAAAAAACTCTTGCACTGGTGA
GTAGTAAAAGCGATGGAACAAACCATTGAGAAGCTATCTCGAACCAATGGAGTCACGGTC
CAGCTGCTAGTTTCCTTCATCAACCCAAAAACATTAATTAGCGCAATTGACCACACAAGT
TGTCTTAGAAGGAAGCTATAACAGTATAAGCTCGCATCAGTACAAGCAGATGAAAAAACA
GCTCAAAATTGCATCAGTTACATCAGTCCAATTATTTTTACAACAACGGGCGTTTGATTA
GCAAACACAGACATAGCTGAACACGAACCAGCATACAAGCAATAGTCACACTATAATTCA
GGAAAATTCTACAAAGAGGTGCAGACGTAGACGAAGATTCAACACTAGCAAAATCTACAA
AGGGGTGGAAAACAATAGCGGCTGCAGCAGAGGCGGCCCGTCCGAGGATGTGAGGGAGGA
GAAGGCGGTCACCGTACCATGTCCTTGGAGAGAGGCCCTGCGCAGTGGTGGCACCTCTTG
GGTAGCTCCGGGGCGGCGTGCTCCGCCATGGCGCCCGCGAGAGATCAGAGATGGTCCGCC
CGGTGGATGGATCCGCCCCGGTCCCGAGCTAGCGGGAGGAAGGGAAGCTCTGTCTGACCT
GTCGCCGCAGCCGCAGGAAACAAGCCCCCCTTGGTTAAAACCCTTCGATTTTGGAGCGGC
CGCGATTCGACCACCGCCTGGCCCCAGCCGTCCGATTTCTTCTTTCTTCGCCTCCAAGTC
GTGATTCTTCGGCCTTAGCCGGATCGGGCCAAGGCCGGCCTGTCATGTTCATGGGCCAGG
CTGATCTTGTCGTTCCTAGACAAACAGCTCTAGGCATGTTTAGCCTAAAAGAAAAAAACT
CTAGGCATGTTTTCCTAAAAAAAAAAAAACTCTGGGCAGGTTTTTTTTCTTCTTCTAACA
ACTGAGCATTTTTTTCCTATGATATAAGGGGAAAAAAACTCCTACACACATGTTTCAACT
CAAAATCGCATCGAAAATACGACACTTCACCCTAAAAAATGAAATTCAAGATTTTTGTAG
CCTTGTAAAGTCATTGTGACAATGAATGCAGCCTTGCGCCTATAGTGCTACACCATCGAC
CAATAAGCAGTAAGGATCCTACACATCGGGACGATGACCAGCACCCAAACATCAACCACT
CACGCTCTTCACTGTTAAGTACAACACTAGGTACATGTTGATGCATACATGTCATGTGAT
CTACTTGTTTCAGAATTTTAGTATTTTATTCTCTACAGCAACCCCTAACTTATTTCTCTT
AGAGTTTCACATGGTATTGGCTCAATTATCACAAAATTTGACTTTATCCTATTACGAGGT
TGCTCCAAAGGTGTTTTGTGGAGAAAATTATTTAGACACTTCTTAAAGCTGGTTTGTTTG
CTTGCTTTTGGTTGCTGATTTTTGTTTAATGAGTTTGGTTGATGATCTTCTGATTTGATT
CATGTGGATGAAAGAAGATTCTTTCAAACTATATTTCTGGGAAATTGTTGATGACGAGGG
GCCAAGCTACGCGACATATCTAGTAAGCAAAGGATTCACAATGTGAGCAGGGTGGTGTGT
TGGACAAGTGATTGAAGGAACAACAAAAGAGAAAGGTGCAAAGGAGGAGCTTGACAATGC
GGTTCATCAGATCATGGACAAGCAATAATGGTTAGATAGCATTAGCGATAATGAGGAGAT
CGAAGAGCATGTAAAGATAATGGGCAAGATCGGTGCGCTCTATATGATGCTTGTCTCTGT
ATCTGCAATGTACGTACTACCCATGACACAGGTAGTCTAGACGACTCTACCAAGTGGAAT
AAACACCGCATTGGCCGCCAGTGTACGGGTCGGCTCACGCAGGGAACAGGCAACGGGTGA
TAGATGAGGTCTCCCCCAGACACGCCCTGAGCCGTGCGGCATGAATCCCTAAGTGGTTGG
GTGTGTGACTTACTCGGCAATTGGTGTGTGTGCTAGATTGGGTTATCCTTTGCGCTATCA
CGGGCATGTTCACACACGTTGCTTTCTTGTTGCATTTTGCTAGACACTTTGGGTGTGCTG
TCGGTTATTGGTTTACAACAGTGTTGGGTAGTTAGTCCTCATTATGTTCATGTGGACTTT
TTGGTGCTTAGTTTGGTGTTATTGTTTTGTGAATGGTTTCGAAAAACATCATTCGAATAG
CTTGCCTGGATTCTTGGTGAGGGCCAGCTCCATGACTTATTTGGTTGTTAGTGTGTGCCA
GCTTGGGTCATGCTAGACACCTCTCATGCTTTGTTGCCATGGTTGTATACGGTCGTTGCT
TTCCAGTTTCGGGTTCCAACCAGTTTGTTGTGTTGTATGTGGTCGGTTAGGTAGTTGTTC
AGGAGGTTGGTGATGGTTCATTTTGAATCATCATTTTCTACTATAATTTATTATATTTTT
ATGATATATTTCATAATATTATATAACTCTATTGTCTTTTCACTCTTAAAATGCAAGTAA
TACAAAGAGAGGGGGTTGATGTAGATTTATGAATCAAGAACGAACGAGAGGGCATCCACC
ATGGGCACACATGCTCTAGGGTACGCTATGTGGCCATGCAGGGCCCACAAGGTTCCTCTT
CCGACGTCCTTTGGTTATAAATTCTAATTTTCCCTAGAAAAATCATAGAAAATCCTCGGA
ACTTTATGCCTCCGTTTGCGAGGAGGAACTTGGGTAGATCACTTTTGACTCTGGCAGTGC
GATTCTATTGGGGAAACTTCCTTCCGAGACGGGGAAGTCAAATTCTTCGTCATCACCAAC
ACTCCATTCATCATGCGGATTGTCATCTTCATAAACATATTCACCAACACCATCTCATCT
TCAAAACCTAGTTCTCTTGTGTTTAGTCTTTTTTATCAAATCTCAGATTGGTACCTGGGG
GTGCTTGTAGTGTGATTACATCTTGCAAGCATATGATGGACCACACGCATCTTTGTTGAA
CATTTACAATTCAGTGGGCGCACTTTCTATTATTCATGTGGTTGAAAACTTTTGTCGTGT
CATTCAATTTCCACATGATAGCAAAACATAGCTATGAGGGTGTGACGGGCACACTTTCGT
TGGTTGTCACACCCCAACTAATGTCGCGGCTGGCACAGTGTCGCCGGTGGGAAGTAGGAA
AACGCTTGATGAGTGTGGGTCCAAAGGCGGAGGTTTGCTGACAATGAAGAATGGTCGAAT
TAGAGGGTTTCCCGGGAGAAGGAGGGGGGCTTGAGTCCTTGCATTTCTATCTAACCATCT
ACGCTTATTCGACTGAACTAAACTTAAGGTTTTATTTTTCTCTCAAGCCCCTTTAGTTTG
TCCGCACATGGTTCTTTTAAAGGGACGCATAGGATTTGCCTCATCCACTAATTAATAAGA
AGTTGGAGTGTTAAAAAATCCTCTCATATTACGAAAAATGTTACTCTCCCGAAATTATTT
TACCCAAATGATTTCCCCCTACTAAGGCCCAAAGCTTCATTTTTTTAGATAATGCCAAGA
ATGATAAAAGGAGTGGTGGATCGGTGTTGTAATACTCTAGCATTTCTTTCATTTCAAATT
GTCAATTAACAAGCATTATGAGTGATGCCATGGCCAATGCACCAATCGTCCAGGGATCTC
CCAACTGACCATGTGTAAGGCCCCATATGCGCTATTGTGTCAAATATAGAACCTAGCGGC
CCATTTCTAGAATAGAAGCACATATAGAGTCATCGTCAGCATATGACTTCATATCATACA
CACATTGTCATATGCCATGAACTTTGATAGCACAACAATTCTACTACAAAATAGGCAATA
TAGGTATATATGAATAGGGCATATAAGTGCCACGATCCAATTTTCTCAAACACAAACTGC
ACAGTCCAACAAAACATAAACCACATCGGAAGTCAACAAAGCATGGGTACAAATAATACC
CGAAGTGACTAAGAGGTTGTTGGAAATATGCCCTAGNNNNNNNNNNNNNNNNNNNNNNAT
TATATTTCCTTGTTCATGATGATCATTTATTAT