Contig Data
morexGenes
Links



Map Locations of contig_269476 (5742 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_269476

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_43331 3 994 bp MLOC_43331.1 Available Available LOC_Os01g45274.3, FRAME:+2, EVALUE:1e-127, 13101.m04642 protein carbonic anhydrase, chloroplast precursor, putative, expressed





CDS Structure of MLOC_43331






Contig Sequence (5742 bp)

>contig_269476 5742 assembly3_WGSMorex_rbca.fasta
CCGCCCCCCGCGGAGGAGAGACAAACAACGACGCGGCGGCGGCGGCAGCGGCAGCGGCAG
CGATAGATTCTTCCTCCTCGTCACTCATCCAGAAGCCTACCTACCATCCACCACCTCCTC
CACCCTCCAACAAGGTCCGTCTCCCTCCTCCCCCCTCTCCCCCACACACCACCCACAAAC
TGCTCCATCCATCCATCAATCTCTTCTTTTTTCCGTTTCCTTTTCTCCGCCCGCCCCCCT
TTCGATTCAGTTCACAGCTTGCCCTTTCAGCTTTTCTTCTTCTTCTTCTTCTTTTTTGTT
GTAAAGCATTTGTTATCCTCTTGCATCGCCTTTGAATCGCCTTTGTTCGTTTGCGCACGC
CCTCCCTCTCCCTCTCCGTGGGCACAGCTCTCTCCCTCGAAATTCGCATGATGCATGTCA
ATGGGTTAATTTGACGGCAACTGATTCGGTGCTGATCCTTCCCTCCCCTTTTGCAGATGG
ACGCCGCCGTGGAGCGCCTCAAGACCGGGTTCGAGAAGTTCAAGACCGAGGTCTACGAGT
AAGCAGTTACCCCCAATCCTGTCCTGCTGCGTCAAACCGATGATGTTTTCGTTCGATTTA
AGTCTTGTGTTTTAACTGACGATTCTCTCTCCGTTTCCTCTTCCCCTGACAGCAAGAAGC
CCGATTTCTTCGAGCCGCTCAAGGCCGGCCAGGCGCCCAAGGTATGTACCCCCCATCATT
CCTTCTGCCATAAAATGTTGCCCTACTCTACTCTAGTTGCTCTGTAGATTTGGGGATCGA
CTCATCAGGCGCTCACTAGTATTACTTCTTCTGGTAGCCATGGCGCAGCAGCGGAAGAAA
AGAAAGCCCCTCTGTTCGTTCACATTATCCTGGGCATAACCCGGAATACACTCTGTGCTG
TGGCCTGTGGGTGCCCATAGCATTTCCTCCTGCTGCGGTCAAAGCAGATGAAAGAAAACT
GCCGCTTGTCCTGATGTCATGGCCTGGCCGTAAGAGGGGACAGCTTGTCGCCATTGCCGG
CCAGTTGATACTCTACTACTAGTACTAGGTTATGTGTTAACACAACCACTACTGTACTAC
CGTAGCAGAGACGGGGCAGGGGGCAATCTCAGGCTGAAACCAGTACGCTTGTGGATCTCC
CTCCGAATAAACCCCCCACCTGTCGTGCACATCCAGGAAATCGGATCGCGCTGCGGTAAC
GACTCCCATGTGCCGTGCGATGCCATGATATGATTTGGCTTATTGAGATGTCACCGTCCC
TATCACTCGCTTTGTGGTCTTGTGGTATTAGAATATGGTTCTTTTTTTGCCCTTTTATTC
TCGTGTAGGAGGGGCAGCAGCACCTAGGATAACTTGACGTCCGGAATCTTGCAAGTACAA
GTACGACTAAGTATCATTTTTTTCCCCATCTCTCAGCTGAGATTATCGATTGGCGTGCTT
GCTAATGCAATGGTAGTAGTATTAGAGGTCGTTGAGGTTCTTTTGGCCCTGTTGAATTTC
GATCCCAGCCGTCTGCTTGCTATCATCCTCTTTTTTTTTCTTCTCTTTGGAAATGAAAAT
AGCCGTCAGCCCGCACTATCGGAGTTGAACATGTAGTAGTACATCTTTTGATGATGCCCA
TTTATATGGAAGCTTCATCATCTTGGCATGGCACCGGCCGCGTCAGACCCCACACACACA
AAGAACCGTGAACAGCAAGCCTTGTTCCTTGGGATATTATTGAAAGCAGAGAAGAAATAC
CTCTACCTGAACAGGGCATAGCTAGCTGTAGCCAGCATCTTATGGCCATGGCGCTGCCGG
TCTGCGTAGCTACGAGTACATGATTAGGCAGGCCCTACCGATACCAGGAGCTATCAACGG
GTGGAGCACCCATCACAAATTAATGTGTTTGGACAGAGTCTTGCGTATACATATGTTTGG
CGGTACTCTTTTTGAGATTGGCATATGCTTACCTTAATCTGGCTGGTATACTTGAGAGAT
CGGTTTAGGCCCGAGGCTACTTTACAGGGAGACAGTAATCCTGCAGCTGACCATCCATCC
ATGCCACAGCCCATGGGACGGTAGTGCTGGTGCTGCTACTGCAAGGAAGAAAAGATCTTT
ACAGTACGTACTTCCGGCGTGTCGCCATCGGAGGAGAAAGTTGCGCAGCGTGTGTGGGCC
TGTCTTCATTTGTTGCAGAAACCGCCGGTGGTCCTGTCTTGATAACTCGCAAAAAATGCA
TGGCCCGTAATCGAGCCTGTCGTCGGGTCTACTGTCACGCGTCATAATCAAGTGCTTATT
TCGGTAATTTGGTTTTGGTTTGGAGGAGAAGCCTGTGCCAGTAGGCTATCCATGGTCCCG
TGCCACGGAACCTTCGCGCTACTCCTACTTGCTTTGCTCGCCTTTCTGTCCCCTGTACCG
TACGTCTCCGGTTCCTTCCGGCCAACACATAGTAATCTCTTTCCCTAGCCCCTCTGCACT
GCATCTGCATGCTACTACTATGTTCTCTCTCTCTCTCTCTCTCCTTGGATAAAAAGTGCA
GTGGAGACAGGTCAAAAGTGGCAGCCTTTAGCTGCAAAGCTGTGTGTGTCAGAAGGAAAC
GCCTACACCGCCTATCGCGGTTATCAGCACAGCTGCTTATTTGTTTATGCGCTGAACAAC
GCATCTGCTTATCACTAACCACTGTGAAATGCTCTAAACTAAAAAGGTGGATTACGGCTA
CACGAGTGCTTGCTTAGTGTACGTAGTGGAGCATCTTTTCTTTCTTGGTTGATGATTGAT
TGACTGACTGAATTGGTGTGATTGGGTGTGCATGCAGTACATGGTGTTCGCGTGCGCCGA
CTCGCGTGTGTGCCCGTCGGTCACCCTGGGCCTTGAGCCCGGTGAGGCCTTCACCATCCG
CAACATCGCCAACATGGTCCCGGCCTACTGCAAGGTCCCGTCCCGTTTCCCTCTTCCTCG
CTCCCTTTTTCATCGCCGAGCCGCATTATTGACGTTTTTTTTTCTTTTCCCGCGCTCTTG
TCAACTATACAGAACAAGTACGCCGGTGTTGGATCGGCCATCGAATACGCCGTCTGCGCG
CTCAAGGTCAACTCCCTCACCCTCTCTCTTTCTTTCTTTCTTTCTCTAGTGCTGTCACTC
TAAAATAGGAGTGCATTATTGCACTAGTGGGCTTTGCTGTCATCTCATCGTCACAAAGTT
CCTTCCAATTACTACTGCTCTAGTAAGAAGAACAACTGAACATGGGCACTGGCTGTTTTT
TAGAGCATGCCCTGATTTGGTACCACACATGGCTGCAGGTTGAGGTCATCGTGGTGATTG
GCCACAGCCGCTGCGGTGGAATCAAGGCTCTGCTCTCGCTCAAGGATGGCGCAGACGACT
CCTTGTAAGTAGAGTAAAACGGCTCAAATCGTATTCCCACTACGCTACCGTCTCTCTGAT
CAGTTTGTGATCGTCTTATTTGATTGGTCAGCCACTTCGTTGAGGACTGGGTCAGGATCG
GGTTCCCGGCCAAGAAGAAGGTGCAGACTGAGTGCGCCTCCATGCCTTTCGATGACCAGT
GCACCGTCCTGGAGAAGGTTCGCACCGTCGGCCATCTGCCATTTCATACTTTGCTCGTAT
AGTATTAGCAACTGCTCCTACTATAGTAGTATGCTCCACAGTTCTGCATGTGGATTGTCT
AACTGACGATTGGTACGCTGACAAAGAGATATTTCTGAATCTTTCCCACAGGAGGCCGTC
AACGTGTCCCTCCAGAACCTCTTGACCTACCCGTTCGTCAAGGAGGGTGTGACCAACGGA
ACCCTCAAGCTCGTCGGCGGCCACTACGACTTCGTCTCCGGCAAGTTCGAAACATGGGAG
CAGTAAATCTTCCCCACCGGTTAACTCCGACATATACAAACGTACATATATCAAGATATC
GTCCGATCGATGTGAATGCAATGCCATGGGAGTGCGTACCCGTTATTGTCCAGTACTGGA
TGCCGGATGGCCCGATGTGAATTTGCCATAAGCAATAGAACCTTTTTTTCTTCACCATTT
TCTGACGAGGAATTGTACTGCTATGTGATGCATAATTTGATCGTCTTGTGATCGAAAGAC
ATCATATATAAGTTTAATATAATATTTTCATGAACCGTTTACCTTTTTATTACCCTTTCT
ATCAGCTGTCTTCAAAGTTTTAAATAGCCCGCTATAGTCCAGCTATAGCGGGGCTATAAC
TGTTTGAACAGATGCCGCTATGTGGCATAGCCCGTTAAACTTGCGAAATAGCGGGCTATA
GCCTCGCTATAGCTGATTTGGAAGGCCGTCGCTATTTGGCATAGCCTGCTATTTAAAACA
TTAATTTGAGGTTTGTCTTACACTGCTTACCTGTTTGCCCAACCCAAAAAAGAGTGTATA
GCTAAAAGGAACCGAAATTGACTAAAAGATTTGAGGTCTTGTAATAGGAAAAATTTAACA
TACTCCCTCTTATTCCTTTTTTTTACCTGCGAGATAATAATCAGACCATTAATTAACGAA
ATTCATGGTTCAAATCTATTATATACTGTTAATTTTTACGTGAAAACAGGAGGTAAGAGG
AAGCATGCTAAAACTGCTCATACGCCTTCCAGAAGCATGAGAAAGGTTTCTTATGGAACA
TGTCATCTTCGGGAAGGTTTCTTATGGAACACCCCATCTTATGGAACACCTCTTATTTCC
TTTCAAGTACTGTCTGCGCCACCAGCCGTGGAGAATGCCTCGAGGTTACCCAAGGCGCAT
GGGCTCTATTGAGATGGTCATCAACAATGGCTCCCGAAGATTCGCCTGCTCTGCACGCAG
CTAGAGGGGTGTACCTTGACGATACCCACTATGTACGAGGAAGGAAGCAACTGAATATAT
GTGGTACAATACGCTGTTCCGGGAGCCATCATGGCTGCGTATGCCACAAGAGACCATGTC
GCCCCGGTACGAGCTAAGCTAGTCTATTATATGTTATATTCAACCAATGATGATCCACAC
AAGGGCCCTCAAGAAGATGTACAAATAGGGGAGGTCGTGGCCTCGCAAGACGTGAGGTTC
ATCCAGAACAAAAGACACGCATTGTAGCCAACTACCAGTGAAATAATAAAACAGAATAGG
AGTAGAGTATTACCCCAACACGATGGTCTGAACCTGGGTTCTCCCACGTGTTCTACTCCT
CTTTCTCCTCTTTCCGATCGTCCATGACTTAGGACGCTAGACGCGTTCAGTCACTCGACG
AACTCTCAAAGGGTTTTAGCAGACAACCCAATGTCGGGTTCTTACACATCGGCATTTGAC
GCGCCAGGTAAGGGACTCAGGCGTATCCGTCCCCCTTGGTCCGCAGTAACTTTGACGTTG
GATTTCTTCACTCTGTGTCACGGTCATGGTGACGGCGTCGTGGATGTCTCAAACATCTCA
TGACCCAAAAAACGATCGGGGCACAGACTTCACAGCGTGCCACCGAGACCATGCTGCTCT
GATGGGCAAGCAACCGGCGACGCCATTTCCACCCTGGCATTCTCGCGGGGTGGGGATGGC
GCCTTGCGCCAGGACTGTATTTTCAATGTGAAAAGCGGCGGCCATGGCGGTGTCGGCTAT
GGGCCTCTTTCCGAAAAACCGCATGGATCCCCATGCGGCGGTCGAGAATCCTTTAGAGAT
AGCGGTCTGTGGAGCACCGGGGGGGGGGGGGGGGGTTTTTTTTAAAAAAAAACTCCCCTT
TTTTTTCTCCCCTAAAACTTTTAAACAAAAGAACCACAACAA