morexGenes - Barley RNA-seq Database

Contig contig_268656

Source Contig contig_268656

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_268656 (6625 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_268656

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_43222	1	2203 bp	MLOC_43222.1	Available	Available	LOC_Os02g35710.1, FRAME:-1, EVALUE:2e-11, 13102.m03884 protein hypothetical protein
MLOC_43221	1	1298 bp	MLOC_43221.1	Available	Available	LOC_Os03g47650.1, FRAME:+3, EVALUE:7e-45, 13103.m05135 protein ankyrin, putative, expressed

CDS Structure of MLOC_43222

CDS Structure of MLOC_43221

Contig Sequence (6625 bp)

>contig_268656 6625 assembly3_WGSMorex_rbca.fasta
GGCGGCTAGGGTTATCCCCTCGGTCGATCGCGGGAGCGACACGAGGGGACCAAGCCCAGT
TATTTCGACACTACAATTTCTGGCACCTTATATTTTCCTGTTCCTGAGATTTAAGCGTGA
AGTAAGATGCTTGTTATCTACTCCCTCCGTCCCAAAATTCTTGTCTTAGATTTGTCTAAG
TATGAATGTATCTAGTCACATTTTAGTATTTAGATACATACATTTCTAAACAAACCTAAG
ACAAGAATNNNNGGACGGAGGGAGTATTATATATGTTTAGTCTGAATCTTGACCGTGCAT
TTTTCCACTAAATTTGCCTAGTAGCTAAACAAAAATATAGGTAGAAATATAAGTTTGGAA
GTATCATGTACTTGCACATTTTTACCTAATTTAGAACAAAACTTTGGGACATGAACACAC
AATTGGGAGAAACTGTGGCCAATACTCAATAGGGAACCCAATGTTACAATCAGAATGCTA
GTATCTGCTTGAAAGAAACCAGAACATAAATAGATTGCTCATGGAGATCCAGAAAGCTGT
GGCTTGTAGAGGAAGTGCCACAGGGCATTCCAATTGTGTGTGTGTGTGTGTAAACTGCCC
ATGAGTTCAAGTAGAAAGATTGTTGCTCTGAAGAAAGTGCTGTAAATTTGCTAGTTTGAG
TTTTGTAAAGCTGTCACTTAAGCTTCTTCATATTTGTTAACTTCAGTTTTTTTTTTTGGT
GTGTGTCATGGCCTGCTAAATATTGTGAATTAAGGGTAAGCAAAGTGATAAAGATAGCAA
AGTTCAGCTGAAATTGAATGCAGAAGTAACAACCAAGAAAGAGGACTCATGTGCACCAAA
GAAGCCCTGTGTCAAGGTAAATATCATTGCATATCTTCCATATTTTAAAGCTGCTTGGTT
GCATATATTTATTTATTTTTGCCACAAGATACATGCTGCTGATATGCATGTTTGGTTGTT
GTTATAGGACAAGGGAGGTGATAAAGATAAGAAGGCTGAACTGAAATTACTCGGTGCAAA
AGCAGTCGAGCGGAAGGACTATGCTGGTGCATTAAAATTCTACAGTGAGGTAATATATTG
TTGCACCATCATATCATATTACTACCAGAGCGCTCTGTTTTCATATCTACAGTGCATTAA
AGTGGATCCTGAAGATGCAACCATATGGATACTGATTCTTCAATTTTTGACCCAAGTTGT
GCTTGTTTTTGAGAATCAACCATATGGTTTGTTTTGACACAGGCAATCAAAGTGGATCCT
GAAGATGCAACGCTTTATTCCAACAGGAGCCTTTGCCATCTAAAGAGCGGCGAAGCGCAT
GATGCTTTGGCTGATGCCATTGCATGTGTAAATCTGCAGCCCGATTGGGCGAAGGGTTAC
TATCGGAAGGGAGCTGCCTTCATGTCGCTCAAGGTGAGATAAATTTGCAATCTGACTTTC
TTTTGCTGCTTTACACGTCACTCCGGCCCAGGTAGACAATCTGCTTCTTGGTTTTATCCT
TCCATCAGGAGTATGAAGAAGCATGTGATGTATTCCTGGCTGGAGGGAAACTGGACCCTG
CAAGCGTAGAGATTCGTGACGCATTTTGGTAGGCTTTCCATCATCCATCGCCTTTGTTTT
CTCGAATATCTATCTATTCTCAGGACTAAGGGTTTGGCTAAATGGTACTGGGATTTGATT
CCAAACATACCCTCTTCATTTATGTTACTATATATGCATATTATTCTGGCAAGGGTTAAG
CAATTAAATCATGTTTGTTTAATCCAATTGCATATATAATTTTTATCAAGCTTTTGTTGT
TGTTGCAACACTGTGTCAAGTCTTTTGCATGTTAGCTACTATACCTTGGAGGTCTCTTAA
CAGTTGGCTATGCCTGACATTTTCAGGGAGGCGGTCGGGGCAATGAAGAAACAACATTCG
GACAGACAAAGTGCGGGCTCTCGGTCTGATTAGAGCTTTCGTGGGCGGTTGATGCAGCCA
TGCAGGGTTCAGTTTTTTTCAGGGTGTTCCTCCTGTTTTGTGTACGTGTGACGAATTCGC
CTTCTCCCTTTTGGTTCTAAAAGCGCGCCGAGAAGTGGTGTTGGCCATGCAGGGTTCAGT
TCGGTTCAGGGTGTTCCTTTAGAATGTGTGTGTCGTCCCTTGGCACATACGTGTGATGGA
TGAGACGTTGTTCTCCTTATTACTGAGAGACGTTAATTAGGTTGCATGATGAAAGCTTGA
GCTAAGCTCAAGTGTGTATCTCGTCACAAACTTAAAAACGCAAATTACCTGAAATTCGCG
GCTCGAAAGCATCCATCCTCTTCCTAGAGGCTGGTAGATAGTACAATTTAACTTCTTAGT
TTCTGGGCACTATTGTAGAAGATCTGAATTATGTTGGGCATCGCCTTTTGCTCCGAGGTT
AGTAGCGCGAATCTTCGGGCTACCGCGGCGTCCGCGAACGCCCCTCCGGTGCCTACTACG
TCGAGATCGGTCTGACGACGTCCGCTTCGGCCTTGGCATGTATCGTTTTATCTATGTATT
GTGAAATATCTGTGTATCGTTTAATCTATCTATCTATGTATTGTGAGAAATATCTATGCA
TATCTATGTATTGTGCAAGAACGTGTGCGCTGTATTTTAGGGCACCTGCTGGAGCTACGC
GCGCGTTAAATTTACCGCGACCGCTGGAGCCAGCGCTCCCCACTGCACCAAAGCAGACTC
TTGACGCGCTGCAAACTGATTATTAAGCGCCGCGCGTTCGGCGGCTGTTGGAGATGCTCT
ATAATGGTCCAGTATAAAAGTTAAGCAGCTGCCGGTAATAAGTTACTATACTAGAGCGGC
AAGAATTTGCTTTTTTTTTTTTTTTTTTCTTTTTTGAAAGTTTACTATACAATTACGTGA
ACAATATGAACAGGGCTGGCGAATAGTGCCTATGCGTAAACAAAGCCACATGAACAACAA
TTAACGGGCGAACAGAAGCCACGTGAACAACAATTAACTGGCGAACATTTCTTTTACACA
TGAACAGTACCCTTCGTTTGAACCGTGCTCTCATAGGAAAAAAAATGCCGTTATCAAAAG
CTGGGATTTTTTTACACATCATTTCTGCCCCCTCCTTCGTCCTTGCGTCCTTATATAGAG
GATTATGATTTATCTTTTTTACTTTTACGCATTATTCCTCCCTGCCGGCATACCGATGCA
GAGCCGTTACGATCGTCTCCCGGCCCTTTCCGATGATGATGCTGTCGAGACACAACAGTA
AACTGGTACAATATATTTGCAAGAACAGTAACCCATGGGAAAAAAAATCTTGATCGATTG
ATGTCGGTACAATATATTTGCAAGATCAGTAACCCACGGAAAAAAAAATCTTGATCGTTA
AATGTCCATCTTTACACCACGACATCAATGAATAGAGCACTAATAGATACCCGAACAAAA
ACCAGACCAATACGAATAAATCCAGAATTGCTAACTGCAACAATCGCCAAATAAACTGAA
ACAACAAACTTGAATAACCCGAACAATGAAACCAGCGCAACGAACCAACCTCAAGTTATT
ATACTATACTAAAGTGGCAAGCATTTGCTTTTTCTCTTTTTTGACTTTTCATGGAAGTTT
ACTATTCAATTACGTGGACAATACGAACAGTGCTGGCGAATAGTACCTGCGCGTGACAAC
GCCACGTGAACGGCAATTAATGAGCGAGCAATTTTTTGACACATGAACAGTACCCTTTGT
TTGAACAGTGCTCTCACAGAAAAAGTACCGTTATAAAAAGCTGGGATCTTTTTTACACAT
CATTTCTGCCCCCCTCCTTCGCCCTCGCGTCCTTATATAGAGGATTACGATTTATTTATA
TTTTACTTTTGCGCATTATTCCTTCCTACCGGCATACTGATGCAGAGCCGTCACGATCGT
CTCCCGACCCTTTCCGATGATGATGCTGTCGAGACACAACAGTAAACCAACACAATATAT
TTGCAAGAACAGTAACCCGTGGAAAAAAAATTCTTAATCGATTGATGTCCATCTTTACAC
CACGGCATCAATGAATAGTGCACTAATAGTTACCCGAACAAAAATTAGATCAGTATCCGA
ATAAACCCAGAATTGCTAACCGCAACAATCGCCAAATAAACTGAAACAACAATCTTGAAT
AACCCGAACAATAAAACCAGCGCAACGAACCAACCCCAAGTTATTATACTAAAGTGGCAA
GCATTTGCTTGTTCTCCTTTTTTTTGACTTTTTTTGAAAGTTTACTATTCAATTTATGGA
CAATACGAACAGTGCTGGCGAGTAGCACCTGCTCGTGAACAATGCCACGTGAACATCAAT
TAACGGGCGAACAATTTTTTTACACATAAACAGTACCCTTCGTTTGAACAGTGCTCTCAC
ATGAAAAAAATGCCGTTATAAAAAGCTGGGAATTTTTTTACACAACATTTCTCTCCCCCT
CCTGCGCCCCTACGTCCTTATATAGTGGATTATGATTTATTTATTTTTTACTTTTACTCA
TTATTCCTCTCTGCCGGCATACCGATGCAGAGCCGTCACGATCGTCTCCCGACCCTTTCC
GATGATGATGCTGTCGAGACACAACAGTAAACCGGTACAATATATTTGCAAGAACAGTAA
CACGTATGAAAAAATCTTGATCAATAGATGTCCATCTTTACACCACGACATCAATGAACA
GTGCACTAATAGTTGCCCGAACAAAAATCAGATCAGTATCCGAATAAACACAGAATTGCT
AACCGCAACAATCCCCAAAAAAACTAAAACAACAAACTTGAATAACCCGAACAATAAAAC
CAGTGCAACGAACCAACTCCTGAAAAGAACAAAAATATTAACCCACCCGAACCATATACC
GAAACAGTAACCGAACTGTAACCCGGAGCTACAGACCTGAATTAGCTAGGACAATAAAAA
CAATCAATCAACACTATGCATTCAAGTGAACAATAATCCAGAAGAAATGTCAGGAAAAAA
CTCCTAAAAAAATAAGACTCCTTCTTCCACGGTGCGTTCACCTATGCAAGGAGAATAACC
GGTGTTGTTGTCGTCGTCTACCTCACCTTCTCCTTCCCCATGGCCAGCCAAATCGAGGCT
TCAACCACAATGCGGTTACTGAAGCCCGCTTTGACCACAATGCGATTAATGAAGCCACCT
CTATGACGCGCCCCATCACGGCAGTCTATAAGCAGCCAATGAGAAATGGCAACATGAAAA
TAAAAACGGTGACTCGACCAACCTCTTCACTCCACTCCTTATTATATCCTTTGACCGATT
CAAAAAGAAAGAAAAAAATACAACACAGTTGATCATCCGTAAAAGGTAGTCATGCTCAAA
AAACTATTGTAGAACAAGTTAATGAGCCGCCAAAACTTCCTGAAGTATGAATATACATCT
TATCCTATACCACGGTTTGAAACGCGGGCTGAAAGTCCTATTAATTAGCAGATTAGCCAT
TCACATGTGTTAAAATACGCTCTTCGCTGATTAATATCCATTTTTACACCAGTCAGACTT
AATGTTTAAATTACTTACAAAATTTTAAATTTGAATTTTACTGGATAAAATCATGTTTGA
GAGAAAGTGAAAGAGTGCCGACTAGGAACTAGACAAGAAATATTTCCCTACTATAGGATC
TACACATTGGCAACACTCTCATTCGTTCTCACTGTTGATCAAACAGATCATATGAGAATG
AATCCAAATACATATTATTACCATGCACATTACATTTTTTTTACTTTTGAAAGGGGGAAA
ATATGTGCTTACGAAAAAAATTAATAAACCAGCCAGTTTACTTAATTCGCTAAATCATTT
AATGTTTGTGTCGTGACATGATAAAAATAGAATTCGTGTTCTTCTTTTTATTTTATTATT
AATGTAATACATGTTGTTTTCTTGATTATTTCAATATGATACAGACGGACTCGATCACAC
CGCGCTACTTCGGCGCTAGTTACTAGTAATATCTTCCAAAGCATCAATGTTTCGCTATTG
TAGCAAACAGTGCAGCAGCCTGTTTTTTCCTTGGCGCTAGTTACTAGTAATATCTTCCAA
AGCATCACTGTTTCGCTATTGTAGCAAACAGTGCAGCAGCCTGTCTTTTTTCCTTTTTTT
TAGTACTAACAGCATGCTTTCGCTCACGTACTCTGCACCTCTCCGGCTGAACAATTTTTT
TTTACCAGACTTAATCACATAGGTCCACATGAGATCGGACGGTCGCGTCAGGCCGCCACA
CGAGAACGCGGTGGTGCGACGCAGTTAGTTAGATTTTTCCTAGAAAGATTTATATATACT
GAATTTACCTTTTCTTTTCTTATTTTGCATCAAAGCGAAATTAACAAACAGCAAGGACAG
AAATCAAGCAGAGCTTCGCGCATGCATGGAAATGATGCCGAGATCACGGCCGCCGGCAAT
CGATCGGTTTCCCCTTGCCTAGAAGCTCTGCGCCGGCCGGTGGCATCACAGGAAGGGCCG
GGCGTTGGGGACGAAGACGAACGGCGTGGCGAAGCAGGGCTCCACGCCGACCCACGGTGC
CCCCGGCCCTGCCAGCGCCGCCTTGTAAATCGCGGCCAGCTTGCGGACGGCACGCCGGAG
CCAGCGCAGTCGGAGCCGCCGCAGG