morexGenes - Barley RNA-seq Database

Contig contig_267688

Source Contig contig_267688

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_267688 (678 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_267688

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_43096	1	289 bp	MLOC_43096.1	Available	Available	LOC_Os04g55570.1, FRAME:+3, EVALUE:9e-38, 13104.m05765 protein plant protein of unknown function DUF869 domain containing protein, expressed
MLOC_43097	1	160 bp	MLOC_43097.1	Available	Available	LOC_Os02g52960.1, FRAME:-3, EVALUE:3e-15, 13102.m06040 protein PHD-finger domain containing protein, putative, expressed

CDS Structure of MLOC_43096

CDS Structure of MLOC_43097

Contig Sequence (678 bp)

>contig_267688 678 assembly3_WGSMorex_rbca.fasta
CTGGGGCCCGACCAGCTGACGAGGCGCGCGGGCAGGGTGGGCGCCCTGGACGCCGTCTCC
TCGCCCTCGAACGGGGTCCGCAGGGACAGCGCCTTCCTGGCCTACTTGAAGGGGTCGACG
CCGCCGACGGCTGGGCCCTCTGGCGAGCCCTCGACGCCGGCCGTGCCCCGGGCTTGACTG
CCCTTGTTGTGAAACCACNNNNNNAATTGAACATGTTTTCAGATCCATTCAATCAATTTG
CTGGTTCCTTGAGTACACCCTGCTTTGGAGGGATCTTTAGTCCATGAGTTATTACCTTCA
TTTAGACAGTTTACCAGTAAATAAGTTTCTATAGTTAACATTTAATCCCCTTGTTCACAC
AGCAGCTGGAGATCTCGACAACATCAGAGAAGCTCATTGAGTGTCAGGAGACAATCCTAA
GCGTGGGAAAGCAACTAAAAGCACTTGCATCACCAAAGGATGCCACCTCGGTCCGTCCAG
AGCGAAAACCTCGGTCTCAGTCAGTGAATGAGATGCTAGCTGTCGATGACGGGGGATTTG
ATGACCTCAGCTCCCCGAAGACCAAGGAGATTATATGCTCAGAAATAAGGCCACCACATG
AAAGAAGATTTTCTGCCGACGAGAGAGGTGACGATTCAGTATCGTATTATTGTCACCCAA
CACCAGTGGTTCCACCCG