morexGenes - Barley RNA-seq Database

Contig contig_267217

Source Contig contig_267217

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_267217 (7492 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_267217

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_43020	1	573 bp	None	Available	Available	None
MLOC_43021	1	1226 bp	None	Available	Available	LOC_Os05g17830.1, FRAME:-2, EVALUE:8e-24, 13105.m01882 protein retrotransposon protein, putative, unclassified
MLOC_43019	1	434 bp	None	Available	Available	None
MLOC_43018	1	800 bp	AK374338	Available	Available	None

CDS Structure of MLOC_43020

CDS Structure of MLOC_43021

CDS Structure of MLOC_43019

CDS Structure of MLOC_43018

Contig Sequence (7492 bp)

>contig_267217 7492 assembly3_WGSMorex_rbca.fasta
TCTAGGGGCAGGCGGGGTGAGTCAGCCTGGGCGCCTGGGCTTGGCCCCAGGCCAATATTT
TTTTTAGATATATAGGTCCAGGATTTTTCCCACGCCCCAGGCAATGGCCTGGGCTGCCTG
GGGCCCAAATCCGCCCCTGTAATGTGCTTACGGACCCAACGTTACGAGTTGTGACTCTTG
ATAATATTAGTACTACTACTTTGGCATGTGTGTCGTACATTTTTTTTCTTGTCACAGCTT
AGTTTACACACACAAATTATGTACGATGTTTTTCACATAAAGAAATGACAAAAAATTGTG
TGTGATAAAATTGTTCAGTTTTCCTTAGATTGCTGAACTATTTTTCTTAATTATAGTTGA
GCAATCGTCCTTGCTGAAAGAGTGATTGGTTAACCTTGATTCCAGCCTTCTAGGCTCAGT
TTTGCTCTAGGCCCTTGGTTCTTGGCCTCTAGCCTTCTAGACATGTTGGCTGGCTGGCTG
GCTGCACTATTTACTTCTAAAGTTGCTTCCATAGTTCAACAATGTATGCCATGATTTTTA
TCAAGCAGCTTCTTGTGAAGCCTATCTTACGTTCTATGGCTGGAGCCATTTTCTATTTTG
AGTACTTGCTGAGCCAAAGTTCCCATCTATAATGAGCTGTATGAATGTGTTTCTGTTCTA
ATGGTCCTTATTTATTTCACTTAATTCCGTTATCTTGGCCTACTTGCTATAGTATTTATT
TCTCAATAGAAAATTATAATTATTGTCTTGCGACAGGATATAAATGAAATTGATGGGAGC
TTATCCGTAAGTGCTCAGTGGTTTTATAGACCAGAAGAAGCCGAGAAAGAGGGTCGTGAC
CCAAGGGAGTTATTTTATAGTTTTCATATTGATGAGGTGCCAGCAGAGTCAGTTATGCAC
ATGTGTGTGGTCCATTTCATTCCTGAGCACAAGCAGGTGCCAAGTAAAAAGGAACACCCT
GGATTCATTGTCCAACAGGTGTATGACCACAAAGAGGAGAAGATGTATAAAATAACGGAT
AAGGACTACGAGGATGACAAGCAGCATCAGATTGATCTCCTTATTATGAAAACAATGGAC
CGTATTGGGAAGCTTCCGGATCGTGATCCTGAAGATATACCTGGCGACAACACTGATAAC
TTATCATGGCGAAGCTTGCGGAAGAGACCTCTGAAGCCTAAAGATGTTCCAAGAGATGCT
TCTACAGGCACATCTGAGCAATTCAGAAAAGAAGATACACCCGTGAATGATAATCTGAAA
TATTTTAGTATCCTTGTCAGACATGAAGTGATTACTGGTAACCAGTATCGTGATTGGTGG
CTTGATAAATTTGTAGACACTATTCTGGCACTCCCTCATTCAAGAGATGTAAGTTGTACT
TGCCATCTTAATTTGTCCCCAAACGTAATTCCTTTCTTTTGGTACTTTTTTGCACAACTC
TCCCTGTTACACCCCCATGATAATTACGCTGATGAACAAATTGTACATGTTTGAACAAGG
TTTGAGGCCTTGGCCTCTGAAGCATTCAGTGTAAATAGTCTGTCATGTTATACTCTGTTA
TATCTTCATTGGTCAATAACTGTGCAGTATGACTTCCTTCTTTTACTATGAATATAAGTA
ACTGCATATAAGTACCTAGCATGTCCAGCTAAGCTATACAACTAAAATCGAAGGGGTGGG
TACGTCCTCACTCCTCAGTAGCCTTCGTGTTGGTACTCCAAACCTCTACTTTAAATGGTT
ATTGTTGGATCGTAGGCCCATAGTCCCTTTAGCAGTGGCGTTCACAAATTACATGGTCTT
TAAACTGTATATGGATTAGAAACTTGGGTTAACTAGATTGAGACACCTGATGCACTAGGC
ATAAAACAAAGTAATCTGTGTTAGAATATAAACTGTTAGTTCCACACGTCTTGCTTTGAT
TCATTTTGGCATGCTAAACATACGTGCATGCTTTAGTCTATACTTCAGTGTCGAGAAGTA
GTGCATATTTGTATATATATTGCCTTATGAAAAGACATATGTTTCCAAAGCCTTCTAGGT
TCTTTGATTCGTTCTGTTCTCTTGTCTTCCTTAGATGATTTTACTTGTGATGATCTTCTA
TTTCCAGGATAATGAAAATTCTTATGCACCTAATGAGGTTGTTCCGATAGTAGCCTCCTT
AGAAAGATCAACATTTGAGGCTCTTCATGCAGACTACCATAAGTATAACCAGAAAATGAG
AACATTATTGTTCAATATCAAGGTATGGTTTTATCCATAGCCACTTTTGGGCATATGCTC
TTGGGAACATCTAAATCATATGCCTTTGGATAATTGTAATGTTAACTCATTAGGTTATAC
TGCATAATGGAACTTGAGTATTAGTTGTGATTAGCCCATGAGCATTGATAGTTTGCTGGT
ATCGATATGCATATCAATGTGCATGAGCATCTTATATGTGGTCAAGCATGGTACTGAGCA
TGCTTCAACATATATTGATATAACGTAAGAGCTAAGATGGTTATATATTGGAAAACAAAA
TAAATAAATAAATTTCAGGTTATTCAAGTTGGAAACTTGTCCCACCCTATTGTTTATTTT
GAACTGTCCTCTGATTCCTATTTGGGCACTTCTCGTTCCCATCACTATAAATATAAATAT
GCTTTAAAATCTGTTATATTAGTACACAAGTAACGGCGCCTATGTTTTTATTAGTTCGTT
ACATGTCTCAAATGTATATGCTTTTCTGTTATGCTCTTTTTACTGTCATAACTTGCGATG
GTTCGAGCAACCGTAGACTGTGTAGAGCTAACTTTTTATTGACCCTAGCCCCTAGGTTAT
CAAGCCATGGTCATTCCATCCACCACTTGCTTTCACCACATCCATAACATTTGCATTTCA
TGCACTACAAAGTTACATATCTAAACATGCATTTTGTAAAGACTTCGTTGGATAAACCCT
CGTGAAGCATAAATACTAAAACAACGGGCATCTCCTTGATCTTTGCAGTGCTACCATGCC
CTTCTATCAATTGAGAACCTTTTCCCATTCTATGGTGCTGTTTGCTTACTACCTCAGTTT
GATTGATTTGTTACCATAATTTGGGCGGGGCACGATCTCCAAGCCCTCGTTTCAGAAATA
TAGCTTCTTGCCAAAGCTTGCCACACTTGTAATGGATCATTTGTTCGCCACATAAATTGT
CACCAGTCTGAATGCCTAAGCACGCCAAACTTTTTGGCTAACACAGCTAACTTGTGGCCA
ATTAAAATGGAGCCTCAAATGTGGCTAGCATAGCTTAAAATGTGTGTATGGCACATGGGC
CATGATGCTTGTTAGAGTAATCCTTGCTGCAGTCAGTCAATGAGTCAAGTCTCTTCCTTA
GGTTGTAAGCTAGTGAGTTAAGTCTGTCTTAGGATACAAGTCAGTGGGTCAAGCCAAGAT
GTCTTAGGATGTAAGAAAGCCACTGAGGTGGTTCTGTACTAGTTGCTTTCAGCTATAAAT
AAGGGGTGAAGCCTAGCCAACTGCATCCATCGCAGCCCAGAAACAAGAGTCCCAAATCAG
AGTTACCGGTGCTCTTGCTAGTTGCTACTAACAATTGGCATCAAAGCTGGTTAAGGTGAG
GATCCTGAGAGATGTCAACTTCAGGCCAGGGCGCTGTCCATAGTCCAACTCCCCAACCAC
AGCACCGTTCCCCTTCACCGCCAGCAAGACGACCGTGCCACCTTGATGCCGGAAGGCATG
AGATTGTTGTTGAGCGTGTCGTGTTGGAAGAGCTGACCGGTTGGCTGAAGGCCTAGAGGA
CCATCTCGAGTCGCAAGAGCCTCCTCGTGAGCATGGCAAACATCTCACCGAGCATCAGTG
GCTGGAGAAGATGAAGGCGTGCCAAGGGAGCAGCTCCTCCTGGCCTGCGCATGGGACAAC
GACGAAGACGACCGCGACAGAAGAGGGGTGGAGAAAGTGCGCATGGCAGTGGACAACGAC
AAAGACGACTGCAACAGAACAACGGTGGAGAAAGTGGTGACAATCGCGTGGCATCCGGAG
ATGGCCCGCGTGATAACACATGCGACAATTGTGGGCGTCATGACCATTGGGCCAAGGAGC
GCAAACAGCCTACGAGAAACATGGCTCTCCTGGCCCAAGCAAAGGAAGAAGATGACGAGC
CTTCTCTCCTCATGGCGTAGGTCCACGCCACTCTAGCCCCAGCCATGAAGGCGAAGGTGC
AAGACAGCATCACTCCAGCCCTAGCCATGGTGGTGCAGGATAGCATTGTTCCAGCCCTAG
CCATGGTGGTGCAGGATAGCATTGTTCCAGTCATAGCCATGGTGGTGCAGAACAACACAA
CTCCAGCTCTAGAGCATGCTCCTCTTCACCTTCGTACAAAAAGCGGCGATGAGCGAATAG
AGGGCAGGTACCTCGACACCGGTGCCACAAATCGTATGACGGGCCACGACAACGTCTTCG
CTAAAATTGACCGAACGGTCACTGGCACCATCAAATGGCGATGGTTCCGTCGTCGAAATT
AGGGTCATCGAGACCATCATCTTTGCTGGCAAGAAGGCCCTCAACGATGTCTACCGTTAA
GGACTATTAGTATTAGGTTCTAAGAGTCCTATTAGGCTATGTTTCCTTTCATTGTACTCC
AAGTCTTTGAAATATATATATAAGCCCCATAGTCTATGCAATAGAGATAAGCTGCATCAA
TAATATAGTACTAGAGCCTAGGTGATGTAGGATAGAAACCCTAGGTGGCCTAATCTTTCA
CAACTTGGAGGGGATTCAAGAGGAACACAAATCACACAGGGAAAACACTCAAAGACAAGT
CCAATCATATATCCACTAGATAAGCGAACGCATGCGACCCACAAGATTACACTATCAACA
AGAGGAAAATAGTAGCAAGGGTAGTTTCTTCCCAAATCCTATGGAGATGGGGGCTTGATG
ATCTCAAGAGATCCTTCTCCCATGGGAGGTCTTGGTGATCCTATGATGGGGATCCTTCTC
CCTTAGGATGGCTTGGTAATCTTGAGGGTTCTTCCCCCTTATGAGGGTTTGATCCGCAAA
ACTCTCCCAATTTAGTTCAATATACTTCGCCAACCCTAGGAAGGAAGAGGGTTTCGTCTA
TTTATAGTCTAGGGCTAGACATGGTTAAAAAAGGCGCGCCTAAGCGAGCGCTTAAGTGCG
CATAGGCTCTAGGCGATAGCAAAACGCCTAATGCATAACTGTGCTCAATCTGCGCATAAT
TGCGCATAAGCATACAATTTGGTCAGAAAAGCGCAAGGCGGTGGCAAAACACACAATTAA
CGCCTAGTGCTTTTTCCTAAGGGGGTGAGTGAAGGGTTGCAAGGCCCTTGGCCCGAGCTA
TCACTCACATGCTCTGGATGTCCGACTCCGGCCCGAAATTGTGGTGCTGAATGTCTGACC
CGTGGCTGGGGCACTGGATGTTCGGGACTTGGCTGGATGTCTGGCCGCTGTAGAGTTGTT
GGCCGTCGATTCCTTCGGGATCTTCCTCGTCTAGGTGCGCTGGATATCCGGGCCTTGGCC
GGATGTTCGGCTTCTATAGCAGTGTCGTGGCTCCACTTCCGTGAGGACTTGTCCTTCGCT
CTGAGCAGCTTCATGAATGTTCTCTTGATACCTAAGCACGCATAATGTCTTCGTTTGAGG
TAGTAGCCATGTCGCACGAGAAAGGAAAGGGAATGCACTTAGGAGCGAGTTCACCTCATG
TTCAATGGCGTGTGCGCGAGCTCTTGTCATATGTGTACTTGGTACTTGGGGAGTTGGTGT
AGTATCCATGGGGAAGACCTTAGGGTGGTCTGCACCATCTCCCCCCTCCCCTTTGGAAAG
ATCCCCTCCGGATTGTGATCTTCATCACCATGGTAAGGGGCCAAGTCGGTGACGTTGAAC
GTCTCGCTCACGTAGTACTTGTCGAGCGGTATGTCGATTTTGTAGGTATTGTTATTGATG
CGTTGTAACACCTTGAATGGACTGCCAGCTCGAGGTAGGAGCTTGGACTTGCGTTTGTTG
GGGAAGGGACCCTTTCGAAGGTGAAGCCATACGAGATCTTGGAAGTGTGCCGGTCACTGT
TTTGGATTTTTCTCGGTCCTAAATGAGATGGCCGAAATTCAGACATTTCAATTTTTTTGG
TATAATCAAAATTTGAATTTGAACCAAATTTGACCAAAAATTTAAGCAAAACTGAAATCA
AGTGGAACAAGTCCAACATTAACTATCACGAGTACAAAAATACAGTGTTTGGCAGACTAG
CACCGGGCATTAGTTTAAGACTTAACTGTCCACCCAAACATCTTTCACAAGTAATACATT
CAGATCGATGTGGAGCACCATGCCGCAGCTGCAGCATTCAAGAACCAACAGAAATGAGGA
AGTTTGTTGAATGCATCAACCATCAAGCGAAAAAAGCCTCACAAAGTTACAAACACCTCA
CACAAAACCATATCCTTACCTCGTTCTTCCTGTGCGATGGAGCTGTCAATGGCTTCAGCG
GCAGCCATCAGAGGTAGGCGGTAGGGGCCGCGAAGGCGCGAATGATGCAGGAGCGGGAGG
AGTGAGCTGGGAGGCTGTCGGCGACGAGTCGGGGACGCTCATTGCTGTTGTGCCCTGTGC
GCCGTGGCGCCACCTCGCACACAGGAGGAGCAAATTTGAGTTGTTCAGGGTTCGGATGGT
TGACTCGGTCGTTTTGGGTGAGGCCGTGTAATGGGAAGCCTCCAGAAGTTGGGTTGGGCC
ACACAAATTCAAATTGAGCCAAAATATTCGTCTGGCAAAAACTTTTATCGGGCCCAAGCG
AGATGGTTGTATTTCGGCCGAAATTTGTTTTTTTCGGCCGAAAATCAAAACTCTGGTGCC
GGTTCACTTGACACTCTGTGCTGAGTCTTTTGTCTTGGTGCATCTTCTTGATGTATGTGG
CACATGCACTTGCATCCATGTTCGTGCGTCAAGATGGGAATAGGCCTGTTCGCGGGCCAC
TGACCCAGCCCAAAAAGTCGAGGCCAATGGGCCTAGTGGATTTGCTTAAATGATGTATGT
GTCAATGGAGCTGGCCACCGTGTGACTCGATGGGTCAGACTGGTCGACCAATTCGAATGG
CTGTGTGCTAGCCACATTGTTGGAAACACCCCTATACACAAGCTAGAACCTGTACAAAAG
AACATCTATGATATACGAAGCTGACCAAACTAGACTGATTCGGTTGAAGACACGCCCGTA
GGTGGATTGATCCTTACGTGAACTAGTACATGCATGTAGAAACAACCAACCTCTTGTTCG
TAGTCTCGGTCGCCGTTGAGCTCACCACCCCGGTCGCCGTACTATACCTCTCCAGCTTGT
CGTCGTCTCGGTGGACTTCCCGGTCGAAAGCAACTTATCTGTATTGAAGGCCCAAGGGGC
ATATATATATATTACACATGACTTGAGGTGCAAGGAAAGTAAACATAGACTAATAAGTAC
TCCTAGACTAATACTAATAGACTAATAATCCTAGACTAATACTAATACTTCC