morexGenes - Barley RNA-seq Database

Contig contig_2652688

Source Contig contig_2652688

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_2652688 (495 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location

Predicted Genes from contig_2652688

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_42591	1	182 bp	MLOC_42591.1	Available	Available	LOC_Os03g10770.1, FRAME:+2, EVALUE:2e-20, 13103.m01208 protein helix-loop-helix DNA-binding domain containing protein

CDS Structure of MLOC_42591

Contig Sequence (495 bp)

>contig_2652688 495 assembly3_WGSMorex_rbca.fasta
TCGGTGTCAAATGCAGATATCTAGCAACATCTACTGCTCGGACAAGGAGTCCGATTGCTC
CGAGGGAAACCGCGGCGAGGAAGCCACCGTCGGAGTCGTCTGCATCGTGAAAGCTCGGGC
CGGCCGCGGACCGGCGAGCAACCCCCAGAACTTGTATGCAAAGGTGAGCTGAATGCATGT
GCAGCCCTGCGCGTCAATTCAATGTGACTGTTTCAGTGGACTGGTTCAGACTTTTGTTTT
GTCCAATGCAGAGAAGAAGGGAGAAGATCAACGACAAGCTTCGGGTTTTGCAGAAGCTGG
TGCCCAACGGAACCAAAGTGAGTCCGTCCTCTTTTGCCTACTCTACGTATGAAGCAAACT
CCTTTTCAAAAAATAAAAATCTAGGAAGCAAACTGAGCTGCAGATTGAGCTAGTTATTGG
CATTAGTACTTTCTGACTGCTGTGAAATTTCTTCGTAGGTGGATCTCAGCACTATGCTCG
AGGAGGCAGTCCTCT