morexGenes - Barley RNA-seq Database

Contig contig_261040

Source Contig contig_261040

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_261040 (1992 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_261040

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_41860	1	1092 bp	MLOC_41860.1	Available	Available	LOC_Os11g40140.1, FRAME:-3, EVALUE:3e-48, 13111.m03969 protein peptidase, T1 family, putative, expressed

CDS Structure of MLOC_41860

Contig Sequence (1992 bp)

>contig_261040 1992 assembly3_WGSMorex_rbca.fasta
TAAGTCTTTTAAACGATTTCACTAGATGTCTACATACGAAGCAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCTATATACATCCGTATGTAGTCCAGTAGTGAAATCTCTACAAAGACT
TATNNNTAGGAACGGAGGGAGTATTTTTTAGAGTGGCACAAAAACGATTGATGCAACCTC
GGTTGACGTTTCACTTGTTCTTATTTCAAGCGCGGTAGATTTGATTAAAATCACCGTGCA
CCACCGTGTGTGAGGGATATGATCCACAATGTGAAGAGAACAAAAATGAAATCATATTTT
TGTTGTGGAAAGTTTCAAGCACACCTGTTATTTCGTGACACAAAGAAAAATGGCTATGTT
CAACAGAAAAATAATCCAAAACCATACGGTGCAGACGACAGTTGTTACTCAAATACTGCA
TGCTATTGCCACAAATCCTTCGTATAAAAAAAAGGTGTACAATCTCCTTCCCGGCACGTG
AGAAGGCAACAACATCTAGGCCTCTAAACCTTCTTGTCAACACCACATAATAATTATTAT
TTTTTGAATTTTACAACACCACATAATCAAACCAAAAGAGGCAAACATCAGTGTCCATAT
CATCGAGCAATTGTGCTTCTGCTAAATTAAAGGCATCAGGATGTCAGACACACAGCAGAA
GGAACATATGAATCCTGATTGACATTCGACAAAGATTTCCGCTTTTCACAATCGTGCTAT
GACTGCTTCGACCTCTGCAGGGGTGTAAAGGTGGTAGTTCGGTGCGACCTTGGCGATGTC
TACATTAGTTGGAGTCACCTGTTCCAAATAGCAATTTAACTCCAGACACTTGGCGGGGAT
TCTTATTGACTGAAATCACAAACATGAGACTGGACTGAGATGCCCCTACCTTTTCTTCCA
TAACCTGTTTCAGGATAGATAGAGCAATGGTTTCAGCCTCCTGAAGGGCCAGCTCCTGCA
GAAGAAACTCAATCATCAGCTTTCAGAAACATGGTGCAAGTATCAACATCCAGCAGAGTG
ATGTGGTCACGTCATGGTTTTCTTCACAGAAGATTAGAAACACATCACTTTCAACATTAT
GGTCTCCTAGCTATAGCTATATTATTCCCAAAAAGATCCAATATGATCCATCGAGGTAGC
ATTACAGCTGACTAAGCAGCATGTAAACTTCCTTTGCATATATACAAATCATGTTGAAGT
TCTCATACAGTTCAGAGCTACTTGATCTTGTTGTGTTACCTTGTTAAACTGCTCCTGTAA
GGAACTATCGGCACCTTCAGAGCCTGACCCTATTGCCTTAGCATTGCACTGCCAAAAGGT
TCCAGATGGGTCAGTGTAGTACCTGCGACACAAAATGCAGACATAATTTCAACAAACCTA
TATAGATTCCTTCTTTTACACCGTCTAGGCACTCTTAATTTGCTTTCTAAAAAGAAATAA
TTCTAGGCTTAGTAGAACAAGCTACTTTATTTTATTTTTAGAAAGGAGCGAGGGGTGTAG
AGAAATCGTTGCCACATGCAATACAGCAATGTGATGAGGATGCGAAAAACAATGTTCAAA
AAAGCGGAAAGCATAAGCGAAGCGGAAGGCCACAGCTTAGAGCAATGGGCACTTAAGCGT
AGCTTAACCGCGCTTAAGCGTTTTCTGAAATTGACTAGAATTTGGCAGATTTTGAATAAT
ATACTCACAAAAATAGGAAACATGGCACATGGGTAATTGAAATAGCATCTAAAATTCAGT
TCACACAATAGCAAATGCAAATCAGGTTCACATAGCAAGCAAAATAACAACTAAAATGGA
GTCCAGTTCAAATAGACATAAGCAAATAGAGATCATGTGGCCAGAATTTTGCCAGAATAT
GAAGAAAATAGTTGCCAAACAGAGCCTAATAATAAGATAAATGGCATATTGCCATTATTG
CGCAAGCAGACAGGCAGAAGTTGTTATGACCGGTACAACGTACCAACGGAGGAGGCCCAA
TGGGCAGGGTTA