Contig Data
morexGenes
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Map Locations of contig_2561346 (4281 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_2561346

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_40573 1 1225 bp MLOC_40573.1 Available Available LOC_Os02g43010.1, FRAME:+2, EVALUE:0.0, 13102.m04770 protein vacuolar-processing enzyme precursor, putative, expressed





CDS Structure of MLOC_40573






Contig Sequence (4281 bp)

>contig_2561346 4281 assembly3_WGSMorex_rbca.fasta
GCAACTCCAGTGGTGGACATGCAACTGGCCGACGTCCCTCCTCCTCTAGTTGCTTCCGCG
TTTTACCCTTTACGGTTGCAGGCAGGTTGTGATGCGTGCAGTTGCAATTCTAGTGGTGGA
CATGCAATTGGTCGACATCCCCCTCCAGTTGCACGCGGATTGCAATGCGTGCAGTTGCAA
CTCTTGTCGTGAGCACCTAGTCAACACCCCCTCCAATTGCAATCGCATTGTATCCCTTGC
GATTGCAGGCGAGTTGCGACACATGCATTTGCATCTCCGATGGTGGACATGCAACTAGGC
AACATCCATCCCCTCTAGTTGCAGTCACGTTGTACCCCTTGTAGTTGCAGGCATATTACG
ACATATGCAATTACAACTCTAGTGGTGGACATGCAAATAGACAAGCATGCCTCCCACCTC
AAGTTACAGTCACGTTGTACTCCTTGTAGTTAGAGACAAACTATGACACATGTAACTATA
TGTTGCTTTATGGACACTCACACAACTCACGTTACTACAATGAAAAGGACCTTCAAAAAA
ACATACAATGAAAGCTAGTGCAATATAAATATATATGTGAATAATAAAAAAGAAAAAAGA
ACAAATTATTTAAAAATTTAAAATAGAAAATAAAAGAAGAAACAACATATAACTAAATAA
ATAAATGAGGAAAACACAAAATACACGAAGAAGAGAGGAAAAAGGGGGGAATCAAACATA
TACAAAAGGACTAGATGAAAAATGAAAATCAGACAGAAAAAATGGCAGACCAACAAACAA
ATAAAAAACACAGACATACAATGAAACAGGCTCCAGCCACTGAGCAGCCCACAACGGCAA
GCAAGAAAAAAGAAGACAAAACAAAGCAGCCCAAATAGGATCTCGTCATACAGTGGATGT
TCACAAAACACCATCAGTGCATGTCGTAAAGTAGCAAAAGAAAATCTAATAGTACGCCGG
TCGACTGAGACTTCACTAAAACTCAGTCGACTGAGTTTTAGCGCTTCCGTTAATTATTAC
CTTACTGGCTGAGCTGTGTTCCCCTTAATTCAAATATATAAGAGATGGATTGGGAGCTTC
AAATAGAGTTTGTATTCCTATAGAAGACTGATGATCAGCTTAACATGCATTGCAGGACTA
CACCGGTGACCAGGTCACTGCTAAGAACTTCTACTCGGTTCTCTTGGGGAACAAAACTGC
GGTTACCGGAGGGAGTAGGAAGGTGGTGAACAGCAAACCAAATGATCACATCTTCATCTA
CTACACGGATCATGGGGCTGCTGGTTTACTTTGTACATGCATAATCCCACATAAACGGCC
TTGTAGTTCAGCTGATTTGCTTTGTACTATAACTAAGCTAACCTTATCAAGCTTGTAGGT
ATGCCCAACCCACCAGATGTTTATGCTGACGACTTCATCAAAGTGTTACGGCAAAAGCAT
GCTTCCAAAAGCTATTCGAAAATGGCAAGTATCCTTTCTTTTCTTTTTCGCTTAAAATTA
TTATTTTTGATCTGAAACAGTATGTATGCTTTGAGTCCCATCTCTAAGAGAATTACTACA
ATAATTGGCAGATCATATATGTTGAAGCGTGTGAAAGTGGCAGCATCTTTGAGGGTTTGA
TGCCACAAGATCATAATATTTATGTTACAACGGCAGCAAATGCGCAAGAAAATAGCTGGG
CAGCATACTGCCCTACTATGGAAATTCCACCTCCTCCTGAATATGATACCTGTTTAGGTG
ATGCATACAGTGTTTCTTGGATGGAAGACAGGTAATGAGCATCATCTGTATATGTACAAC
TTCGTGTCAGTTATCTACAACCGTGATGCTTGCTTGCTATTCTAAACCATTTGATCCTAC
TTAATTTGCAGTGAAACTCAAGATCTAAAGAAGGAAAGCATCAAGCAGCAGTACGAGGTG
GTTAAAGAGAGAACGGCACCCCTCTCTCATGTCATGGAGTATGGTGACAAGACATTCAAG
GAGGACATGCTTTTCCTCTTTCAAGGTTTCGATCCTGCAAAGTCAAGCATCAGAAACAGG
CCGCTGCCTATGCCCAGCCTCAAGGGTGCAATCAATCAACGAGATGCCGATATTCTCTTC
ATGTGGAGGAAGGTAACAGAAATCCCGGTTATTTCTTGTCTAGTTTATCTTCACTGTTAC
TAAATTTCATGTGTTTGATTTGCCAACTGTGTCTTGATAATGTATCTTGTTGCTTTCAGT
ATGAGAAGTTAAATGGGGGGTCGGAAGAGAAGCAGAGGGCTCTCAGGGAGATCAAAGAAA
CTGTGCTACACAGGAAGCATCTGGACAGCAGTATCGATTTCATCGGGAAGCTTGTCTTTG
GAATGGACAAGGGGCCTTCGATGCTCGAGGCTGCTAGAGGCTCTGGCCAGCCACTGGTAG
ACGATTGGGATTGTCTGAAGAGGATGGTGAGTGTAACAGTTTCTTACTCAAACCCCATTA
ACACATGCAACACCCTGCTGCACTCTTTCTGTTTCTGGTTGAACTTACTCTGCTAAACTT
GATGCCAACTGTCAGGTTCGAGTGTTCGAGTCCCAGTGCGGATCACTCACTCAGTACGGC
ATGAGGCACATGAGGGCGTTCGCAAACATCTGCAACAATGGCGTCTCCGAGGCCGAGATG
AAGGAGGCGAGCATCAGCGCTTGCGACGGCTACGACATGGGGAAGTGGAACCCTCTGGTT
CTAGGGCACAGCGCCTGATCCGCTGCACTGCAGTACATGGGAGCAGTACCAAATGCTCCA
GAGGCTCCTAGCTAGGCCTCATATATGGTGTACATACATACACTGGTATAGATACCTCTA
CAAGAAAGCACCCAACAATGACGCCCCATGTGTATTGGGTTAATCAGTAGCTTATGATCG
TGGTCGTGCCTTTGTAAACTAAGTTTGACTGCAATCAATTGAAAGGCAATGATTTTTATG
TAGCAAGAGCATGTGAATGTCTATGCATGAGTCATCTTTTCTTTTGTGAGAAGAGTGTTG
TGATAATGGTTGACAGCGCCTTCTGATAGTTGCAACCCACTACCTATATTTTCTTCTCAT
GCAACCATGCCATATTATCAAGTCATGTATTTAGTTATAAATATTTATTTTTACTCATGT
AACCATGCCACATCATCAAGTTATGCATGTGGTCATAAGTAATAATGTGTGCACTAATCT
ACATATTGTTTCACTAATTTTTGTTATGGACATAAGCGGTATATACTTTAGAGCAAATAT
ATGTAGATCATGTTACACTTTTTTACATATCTTTTGTCAAATGCTTCATATGAGTTATTG
CTCTTAAAATATAAAACAAGAGCAATCTTAATATTTTTTAGCAATAGTTTTTGCTTTTCA
ACACCTCTTTATACATCTGTTTATCATGTTTCCCGCAGCAACGTGCGGGGCATCATCTAG
TACTAATGAATAGATGGGCCATTATTAGTACCAAAATTGCTAAATTGTTGACCCATGGAG
GAACATGACAATGACCAACCACACCCCCTCCCTCTCCCGCTCCCATGTCGCTCCCGCGCG
GGCGGCCCGGGAGAAACCCTAGCCGTCGGCGGTTCCTCCCAACCACATCCTCCTTCTACT
CCCGCCGCCGCCGGAGGGCGTCGATGGGCAAAGCCCGTGCGACACTGGAGGCGACGGTGA
CGGTTGTTCCTCCTCCCGGCTGGGCGTGGAGGCACGAGGCACGATCTGACGACGGGGACT
CACGTCCGTATGGAGGCGTGCGCCGGTAGGGTGGTGTTCAGCAGCGACATGTGAGGCGCG
GAGGCATGGGTGGCTGGTCGCCCGGGGATCCGCCACCGCTCTGTCCATGGGAGCTCCTGC
GCCAGATCTGGCTCCCTTGGTGTGGCAGCTTCCTCGACCATCGGTCCCATGGCTGCGTTC
GGGATATGGCGGCTTGATATGACGGTCTCGCGAGGCTTGCGCACACGACCTACGTCGGAT
TTCGAGGCGCCCCCGCGGAGCGTTAGCACGAGCCGCTCCGGGGGCTGCGTGGGAAGGACG
ACCAAGGCGGTGCGGAGCGGCAGCCTGGCCAGGCAAGGGAGAGTACTAAGGAGCGCTAGG
GGGCTATCCCCCTCCCGAGGCCTCGTGGCCTGATGAAAAGGGACCGTCGGAGCGCAACGC
CGTTGGGCCCCCCGACGGGGACTAAGGGTGCGTTTGGTTGCAGGGATATCCCTTCTATGC
GAGGGATGCACCTGTTTGGATCCGAGGCGAGGGAGGACAGGGGCAACCAGATGCCAAGAA
TATTCCCTCAAAACAGGGATG