morexGenes - Barley RNA-seq Database

Contig contig_2560621

Source Contig contig_2560621

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2560621 (1544 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_2560621

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_40512	1	668 bp	None	Available	Available	None
MLOC_40511	1	499 bp	MLOC_40511.1	Available	Available	None

CDS Structure of MLOC_40512

CDS Structure of MLOC_40511

Contig Sequence (1544 bp)

>contig_2560621 1544 assembly3_WGSMorex_rbca.fasta
GGCCGCCACTGCCATGAGCAAACCTCCGGTCAATACCGGCAACCCAAAGCCCTTTTTAGC
TCACCATAGCTTAGGCTAGCTCCTCTATCGCCCCGAGAACCCGTTCCCTCCATCAAATTG
CGACATGGCAACCGCAGGCCGATGTCGTGCTCGCCGGAGTTCCCGGTCCGTTGTTGATGA
AAGGGTGCTCGCCCTCAACCTCCCCAAAAGCCCGTGTACCCTCCAGAGGATGGGGTCCTC
ACCGTGTAACACAATGGTGTGCTCAGCTCCGGGAACAAAGCCTCCTAGAGCCATCGAGCG
TTGTCGGAGTTTGCCCCTGATCCTGTTTCCTACGCATGAGAGGAGGACGGGGAAACCCAA
CAGGAGGTACCCGCCTGTCAGCGAGGCAAGCCCCGGAGATGATCGCGCAACCGCGCCAGT
ACGTTTCCCTTCAGAGGAGGCGCATTCCAGTAGGTACGCCTTCGTCTTAAGGAAACGTAA
TTAACCCGTAGTGTTTCAGTTAATGCGTATTCTCTGCTGGAAATCATATTCATTAGCAAA
ACGTTTTCCTTTATAATTGATTTAAATATTAGGTTTGACCAGAAACTTTGACCGGCCAGA
ACTTTTTAAATAAAACTCCAAATTAATTTGATTATTTTTCCTACCTCTTTAAAATTTCCT
GTAGTTTATTTACCGATTTATTTCAAAAAAATAACAACTTTTATGTGCTGTTTTTGAATT
GTGTGTTGAATGGTATTATTTTCAAAATAGGAATTTGGAGTGAGAAAACTTCCTTCAAGA
TTTTTGGGTGCAGACCACCCTCCTCAACCCCAAAGGCAAGCATCTTGAACCCTGATTTGT
GGTAAGATGTGTGACGTTTGTTGTGATACATTGGAATGCGTTATTCCATTATGTTGGTAA
AAACTCTTGCATATAGTCATACTTTGCATGAGTGCATGTGATGGATATTCTGTTGATGAA
TATATGTGATGCAAAGGTGGGTGGGTACTTCCTCATGCCTCGTATGCCATGTTGGTCTGG
ACAACCTCGGAGGAAGGTTTGTCGTGGTGAATATGAGACCATGGGACTGACATCTCGTGG
GATGAGGGTGGTCAGTAAAGGCATGTTGGGGTGTGATGGTGGTAACACCGAGGTATGTCA
CTCAGCAAAGTCGTGTGGTACTAACCCTTGAAGGAAAACCTAACCTCCTCAGTCGACTGT
AGATCGAGTCTTGTCAGTATGTTACCTTACCTTTTGTGCTTCCACAAGTCTTTCCGAAAG
GGAATATGGTTTAGTAGGTCGTAAACCTATTACTAGGTGCACACCAAGTAGAGGGAACGG
GATGAAGGTATCCATGGCTCTGGACTAAATCCAGTCATCCGGTCAGGGGGAATGTGTGTT
TCCATTCCGGAACCGAGAGGGAAGAGCTCTTCCCTTGTAGCACATGGTATAAATTTGATC
CCATGCTAGTCGAGGTTGGAGCCTCCCCATCTTATGGTTTTTCCCTGGCAATGTAGCCCG
GGTGAGGCCGGTCTTCGCGAGGAAAAATGGGTGTGTACTAGTTC