morexGenes - Barley RNA-seq Database

Contig contig_2558176

Source Contig contig_2558176

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_2558176 (1716 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_2558176

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_40318	1	1329 bp	MLOC_40318.1	Available	Available	LOC_Os05g03910.1, FRAME:-3, EVALUE:1e-11, 13105.m00384 protein RNA polymerase II-associated protein 3, putative, expressed

CDS Structure of MLOC_40318

Contig Sequence (1716 bp)

>contig_2558176 1716 assembly3_WGSMorex_rbca.fasta
AGGAACGGAGGGAGTATTAGTTTGTTTATATTGTAAAATTGTTTGCCACTTCAATGCAAA
AGGCCACTTGAAAAATATATAATGTTTCTGAAGTTCGGTGAATTTGTCTATGGAAAGGAA
GAAAACAAGCAACGGAGCAAAATAAACCCACCATGAACCCTACGCAGAGCACAAAAACGC
ACAAATGCATGCGAGAAAGAAAAGCACAGGCACAGGTAACCTTTGAACCAGCAAAGCTCC
AAGAAATCTCAAAAACATGATTCACAACCATATGGTTCACTGCTCCGACTAGATTTAACA
TTCAGTCTACAAGGGTGTTACGGTATTGGTTGACTAGAGGGCAGAGGGATCTCTAGGGAA
CTGTCTTTACAACATCATCATTTAGCTCAAAGTGAACATGTCATCATGCCATCCTCCTTG
AACGTACTTGGCTTGCAGCTGCCTGAGGATTTCAACTTGATCTGGCGATGCAGTCTCGGC
AAGGAATGTTTGACCCCATATCTTCCGCAGTTCTGACCGGAAAAGAGTCAAGCAGAAGCA
AAAAGAGTATTGTCAAATGGATGATGTTGTGCAACTACTGAACACTAGTATGTCCAAAGT
CCAAATTTACAGATTCATTGAAATGGAAGTTGTATGAAATCATCAGGTCACTGGAATTAG
TGGGAAGAGCCTACTGATATTTTAAAAATGGGTCTACCAGCCAGTAAATATAAATTTGCT
CCCCGATCTAAGATGCCTTCAGGTGGGTTCTATTGCACATTTGCATATCATCCCACTACT
TTCCTTTTTATATCAGCAATTGTTAGTATTTGAATAATTTATGTACAGGCATGTCGACAT
ATACTACTCCCATATCACCAACATGTTCATATTACACGTGCACAATTCTCTGCTCAGCTC
AGATGATTCACCCTCTTGATCCTCTCATATATGGGGATTTTAGTATCGACTTATAATTTG
CAGGGATATAAGGAAATTAAGGATCATATCCTTCAAAGCAGGTTGATTGAAAGAAAATCG
ATCTCCAGTCCGCATACATATTGCCGGTTTTGTTTTCCGACTCCTCTAACGTATTAGTTA
GTTCAACCGTTCTAAATCATCCAACTTTAATCTTCAGTTATTAAACTTGAGATATGAGGA
GGTTTCTGATTCTCTAGTTTAGTGTTTATAGTTGCATAATATGTATGTACTCAAATATTC
AGGTACGATTCTCTTTCTTTTTAGCTAGCTTGCAGCCCGGCCCAGCTCCTTATTTTTCCT
GGCTCCGCCACTACACCTGCCCGACACCTGCCGCACGGACTGCGCGAGGTGTACCCGTCG
TGCCTAGATTACAGCGTTGCATGCACATATTCCAATGATCCCACCATTTGAAATCCTTGT
ATAAATATATACAACCGATGAGTGAATATACAAGAACGTTTTCCATCGTTCAACTTAGTT
AAAGTGTATATGTGGATCGCCTAGCCCTTTTCATCAGTTTAGACTTTTGGTTGCGTTGGC
TAGTGCATGAAGCTTAACATGGTATCAGAGCCCAAGGTCTTAGAGTTCAAATACTGGCTT
TCGTAGTTTAACCACTTATATGCCTCTTGAGCCATACCTTTGAGTCTATCCACGTGTTGA
CTTTTCGCGTCACACGTGAGAGGGGGTGTTGAAGTATATGTGTGGATTGACTAGCCCTTT
CCATCAGTTCGGACTTTTCGTTGCGTTGGCTAGTGC