morexGenes - Barley RNA-seq Database

Contig contig_2557365
Source Contig contig_2557365
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2557365 (7262 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_2557365

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_40238	2	2254 bp	AK363231	Available	Available	None
CDS Structure of MLOC_40238

Contig Sequence (7262 bp)

>contig_2557365 7262 assembly3_WGSMorex_rbca.fasta
GGGGCGGCATGGCGCCCGCGTGGAGCAACGGCGTTGACGCGGCGCCGCCGGACAGCCTGC
AGGAGGTCACCCGGGCCGGGAACGAACTGTACAAGCAGGGCCGGTACGGCGACGCGCTGC
GGCACTACGACCGGGCGCTGGCGCTCTGCCCGGACAGCGCCGCGTGCCGCGGCAACCGCG
CCGCCGCGCTCACCGGGCTCGGCCGCCTCACCGAGGCCCTCCGCGACTGCGAGGAGGCCG
TCCGGCTTGACCCGGCCAGCGGCCGCGCCCATGGCCGCCTGGCCGCGCTCTGCCTCCGGT
GAGACCCGCTCCTCCATGCATATCTCCCGCTGCATTTGGGTCGGATCCCTGAATCCATTG
ATCCACACAGATCTTGTGTTTTCGCCATGCTTGCCACTGTTGCTTGTGTGCTAAGCATTT
CCTTGCAGATACAGTACATCGGTAGCAGCTGCTATTTTGCTTGTCTTGGAAGCAAAAACT
TTGATCTTGCAGAAAGATTGCCAGCTACAAGAGTATATAATTTGAATTCTCTAATTAATT
GCATGCTGCAAAGAATGGAAAAGAAAGATTGCATCGTCTGTCGGTTTATTGTAGTCAATC
AATGTGTTCTTAATGTATGCGGTTCAGATGGAGTGCTTATCTGCATTGTGCATTTGGACC
AGAATGTGGTCCTAGCGTATCGTTTCGATCCGACGTTAACGCCGGTAGTGTCAATGTGCG
GTAATCGCACACTTGAATTGTGACTGAAATGGCATTTCTGATGGCCACATTGCAGGTTTG
GGATGGTTGAGAAGGCAAGGAGGCAGCTTACGCTGGCCGGAAACGCAAACCAGTCTGACC
CTGCTGAGTGGCAGAAACTTCATGAGGTGGAGAGCCATCTGGGGAAGTGCATGGATGCGA
GGAGGATCGGAGACTGGAAGAGTGCGCTGAGGGAAGCAGATGCCGCCATTGCCAACGGGG
CAGACTCCTCTCAGCTGGTAACCTCTCTGGCCTTGTAGCTCGTGATATTTTTCATCCTGA
AGATATACTGTGTTTTTGGGTTAGAGCTACTAGAATTCAGTCTCTCACAAACAATCCATG
TTTCTCCTGCAGCTCCTTGCCATGAGGTCCGAAGCGCTTCTCCGGCTCAACAAACTAGAG
GAGGCCGATTCGACTATTACGGGTCTGCTGAAATTGGACAGTGCATCTCTATCTTCAATG
TCCACCAAACTGTCAGGCATGGTAGCCGATTCATATGTACATGTTGTCCAAGCCCAGGTC
AACATGGCATTTGGGAGGTACAATTCTAAAACACACCGATGGACTACGCTCATTTTTCTT
TTCTGGTACAAGCATTGAAAGTCGGTTTTCTGCAGGTTTGATGCAGCTATTGCCATAGCT
GAGAAGGCTAGAGCTGTTGATCCTGCAAATGCAGAGGTTGGATTGATTCTGAATAACATG
AGGCTGGTAGCGCGGGCTCGAGCTCAGGGGAATGACCTTTTTAAGGCGGGCAAGTTTGCC
GAGGCATCTATTGCCTATGGTGAAGGGCTCAAGCATGAGCCCTTGAATCCTGTGTTGTAC
TGCAACAGAGCAGCTTGCTGGTCGAAGTTAGGTCGGTCAGCGAAAGCCGTTGAAGACTGC
AATGAGGCGCTGAGGATCCAACCTAGCTACACAAAAGCTCTCTTAAGGCGGGCAGCGTCC
TATGCAAAGGTAAGCAACTTACATACTTTGATATGTTCCTTGTTACTCACCTAATTTGCT
ATTGACACCTCCCTGTTGGCATTGTTTTAGCTTGAGCGTTGGGCTGATTGTGTGAGGGAC
TATGAGGTGCTTCGCAAGGAGCTTCCTGGTGACACGGAGGTCGCAGAGTCATTGTTCCAT
GCCCAAGTCGCACTGAAGACAACCCGTGGTGAGGAGGTATCAAATATGAAGTTTGGTGGA
GAGGTTGAGATAGTTACCAGCATAGAGCAAGTCCGAGCTGCTATACATTCGCCCGGTGAG
TTTTTCCTGAACAAGTTTTTCCTCAGCTATTATATTTCTTTCATGTCCTTTGTTATGCTA
GTATTGTTCAGTTACCATCATGCTTTGCCCCAGTTCTATACTTAAAAAAGTTATCAAGAT
TTTCTTGCATATGCTTACTTAACTGTATTCGGTTCTCAAGATGGTTTGACTGATTTAAAT
GCACACTTTCAGGGGTGACTATTCTTTACTTCATGGCAACAATGAATCAGCAGTGCGCAC
AGATTACCCCCTCAGTGGACGCTCTTTGTTCCGAGTGCCCTTCGGTGAATTTTCTGAAGG
TAACCTGACATCTCTCTGTATATATGAACTGCTTGCAATCTGCCACATCTTACAAAGTCT
TCGAACTTGCTAACCGACCCCTTGCATATGCAAACTTGCAGGTAAATGTTGATGAGAGCC
TAATGATAGCAAAGGCAGAGAATGTGCGTGTAGTCCCAGCATTCAAGATATACAAGGACG
GCGCACGGGTGAAGGAGATGATCTGCCCCAGCTTACACGTTTTACGCTATTCAGTGAGGC
ACTACGCCGTCTCCAATTCTTGAGGAGGTCATACCAGTGGCACCCATACTAGTCCTTCGA
TGCATAGAGTCCCCGGTCCATTGCCGACATTTTACCGACACATTTTTTCTATAGAATCAG
CCCCTCCACATCACCTCAGCAGCCTCCATTGAGCATCAACCAAATTAAATTTTGTACATC
AAAGAGTTTGCTATCACCACCCATACTTCCTTTCACCATGCTGTTGCTAGTCCCGAGTCC
TGACCCTTCATTCGACCTACTGTTGGATCATTTAGGCTCCTCATTTCCTACCATCACCAG
TATCCATCACCGCACCAGCCTTGAGCAATTCTTTCATCTCTTGCAACTCTGTTCTCTGCC
ACCTCATGCATCATTCCATACATTCTGCTCCTCCCCGTAGAATGACAGCCGCTTCTCAGA
GAAAAATAAAGCTCCTGACATATTTTTAGATGCATGCCATTGTTAGAGAGGGAGGAGGAA
GAGATAAGAAGAGGCCTGCCGTGTGCCGGCTTCTTCATTACGTGTACATAAACCATATAG
CAGAAAAAAAATGGGGGATTGGTTATTCTGCGGAGGAACGAACGGCCGCGCCGTTTTTGG
CGTCGGGCCAGTTTCCATTTGAGAAGGATGTTGATGTAATCTGGTAGGAAGGTTGTCATT
TTCATGTCCTGTGGAGGGCCATGTGGCGCTGATGTGATACATATACATGCTGACATTTCT
TTCTTTCTTTGTTCCTATGAATAAAAATAGTCCGACATTCATTCATTCTTTCCCATTTGT
GCTCTGTTTTTTTTTTGAATAAAAGGGGTTTCCCCCTGCTCCATTTTATTGAAGCAACGA
GCCAACAGGTTTTACAGCCAAGTAATATACCAACACACCAAAAGATTTGTGCTCTGCTCA
CTCATGCTGCAACTTAGTTTTAGTTTCTCTCTCCCATTCTTGCAAATCCTCCATTTTTGT
GACCTTCAATACCGGTTCCTTTCCATACCCAGCAGAGTACTGGTATACGCTAATTTTGTT
TTCTTGCATAAGCGCCAGCATTTGTTTCCTTGGGAACAAAAGGCGCCATTTTCGCCAATG
CTACTTACTGAAGTGCATTGCACGTTGCTGAAGTATGTTTGCTTCAGAGAATTTTCTGTT
AACCGTTGTATCACAATTGCTCGGTTCGCTGCTACGCGTATTAATTGCAATGCCAGCCGA
AACTGAATTTCAACCAGCCGTCGATTGAAGATGGCGAAATTTGTTTTGCCAAAAACGAAA
ATCATTTGTTTTACCAGTAGTACTCCTAGATTTATATATTTATTGCTCAGGTTTTGCCAA
GGGTGCGGCAACCAAACTTGCAATGATTTGTGGTTAAACAATCACCGACTGGCCCTTAAT
TGGCACCATTTATGTGCTGCTGTGGCTGGTCGCTCAAACACTTGGCATCAGGCCAGCAAG
GCAGCAGTCGAGTTTAGTTTAGTTTAGTTTGTGGGCACACAGCTGCCTCGGAGTAAGAGA
AAGGGAAGACTTTCTCGTCTCTGGATCGAAGAAGATTCCGGCTGATCGTGATGGGGGCAT
GTAGTTTTTCCTTGGAATATGAATGCACTTTTGACTAGGGTTCTTTGTGAAAGAAAATGA
GTTAAGCGTATGCCTCCTGGGGACGTGTGCCTGCTATATAGCCAGCAAGATTTACATCAT
AGGCAGGAGGTTATCTAGTCTTGACCCCTACTCCAAGCTATACAAGATAAGGATCATATC
TAACTAACCTCCAGCCGGTTACAACTAACACACACGATTACATTAGCGTGACATCTATCA
CGTTACACAAGCCTATCGTTTAACATCCTCCCTCAATCTCAGCGTGTCAAGGTTCAGATT
GTTCTTGAAGGCTTGCAGCTGTCGAACTTGCAGGGGCTTTGTGAATCCATCAGCCACTTG
ATCTCCTGTAGGAATAAACCTGATTTCCAACAATTTTCTGGCAACTCTCTCTCTGACAAA
ATGAAAGTCAATCTCTATATGTTTTGTCCTTGCATGAAACACTGGATTAGCTGAGAGATA
AGTTGCCCCAAGGTTATCACATCATAAACGAGAAGCATGTGGTCGTTCAACTCCTAGCTC
ATCTATCAGAGTTTCTAGTCACATTACTTCAGCTGTTGCATTTGCAAGAGACTTACATTC
TGCTTCAGTACTAGATCGAGAAACTGTTGCTTGTTCTTTGCATCCCAGGATATAAGATTA
GAACCAAGAAAGACAGCAAACCCACCGGTAGACCTTCTGTCATCAGGACATCCTACCCAG
TCTGCATCAGAAAATGCACGTACAATGGTTGAAGATGTCTTGCATATTTTCAGTCCAGTG
CTAGCACCCCCTTGAACATATCTCAAGATTCGCTTTACATCTGTCCAATGCACAGAAGTT
GGAGAGTGCAAAAACTAACAAACCTTGTTAACAGAGAACGATATATCAGGTCTAGTCAGT
GTTAGGTATTGAAGTGCACAAACCACACTTCTATATTTAGTTCCTTCTTCTCGACTTAAC
AATTCTCCATCATGCAATGATAGTTTTTCTGTTGTAGAATGTAGACAGGGGTGTACTAGA
AGGTTTACAGTCCTTCATACCTATACGCTTAAGTATATCCTTAGCATACTTTTCTTGAGT
TAACAATATCCCATCATGTACCTTTTTTACCTCAATACCCAAGAAGTAATGTAATTCTCC
TAGATCCTTGAGAGCAAAATCACTTTTCAGATATTTTAAGTAGAGCTGCAATGGCTTTTG
TCGATGAGCTAGCAACAATTGTGTCATCTACATAGATAAGCATGTAAATGACTACCTTCC
CTTTCCTGAAGAAGAACAAGGAAGTATCTCCCTTGGACGACCGAAAACCAAGTTGTTACA
GTTTCATACTTAGTCGCGAATACCAGGCCCTAGGTGCTTGTTTCAAACGGTATAATGCTT
TGTCCAACTTGCATACATATTGTGGTTTAGTGTCGTCCACAAAACCTGGAGGTTGTTTCA
TATACACCTCTTCCTTGAGAACGCCATGTAAGAACGCATTTTGTACATCCAATTGGCGAA
GAGTCCATCCTCTAGAGACAACAATAGACAGAACAAGTCTAGTAGTAGCTGCTTTGACAA
CTGGACTGAAGGTGTCCTCATAATCGATACCATAGCGCTGTTTAAACCCTTTAGCTACTA
ATCTAGCTTTGTATCTATCTAGTGTTACATCAGAGTTTCTCTTGATTTTATATACCCATT
TACAGTCTATAATGTTTCTTCCTTGCTTAGGTGAGACTAGATGCTAGGTTTGATTTTTCA
TAAGTGCACCATACTCTACCTCCATGGCATGTCTCCAGTTTTTATCATTTAGAGCTCCTG
ATAAGTCTCGGGGTTCTCTAGTGACAACAAGATTTACGAACTTGAAGTTCTTGTCATACC
TGGTTGTTCCACCTTTAGGAACTAGTGGTTTGAAAATACCTCTCTATGACCGTGTACTGG
GACGCTCGGACTCAGTAGGTACAGATGACTCTGCAGTTGTTGGAGCTGTTGCTCGAGCCT
GGGCGTTTTCCCCAAGTGATGTGTTGTTGGCGCCAGACCCGCGTACAGGTGCCACACTTC
CTGGAGTCCGCGCCCTCTCACTTTGGTGTGATGATGAGGAGGCAGACGTGGTTCCACCTG
GCGGCGCGTCATCCGTGCCGGATGTAGTTGGAGACGTGCCTGTCTCCATGTGGGCGCTGG
ATTTTGCACCGTCGTTGGATCTCTCAGGATCGGGGGGTACAGGGGGATCATCATCGTGTC
CCACGATGTGCTGGAGTCTGCTGCTGGTGTGCTGCATAAAATGATGACCAAAAACACCAG
GTGCTGGTGCAGGGGCGTCACGAGCTGCAGCTGGTGTAGTTCCTCCTCCGTGACTGGCTG
CATCTGTATCTGCATCAGGTGTGTTAGTGGTAGTACTATTAATCATATGATCATCAACTG
TTTCACCCCCATGATCAGTAGGATTGAGTAGATGGGGAGGAGGTAGGAGGATTTCAGCCC
GTAGACGAGCTCTGGCATTAGGATTAAGAGTGGAAAAGGGAAAGACATGTTCATCAAACA
CGACATTTGTAGAAATATAAACACGTCTTGTGGAGATATCAAGGCATTTGTAGCCTTTGT
GAAGATTACATATCCGAGGAAAACACACTGCTTGGAACGAAACTGCAGTTTGTGGTTATT
GTATGGAAGTAGGTTGGGCGAACAGGCACATCCGAACACTTGGAGAGAAGAATAATCAGG
GGTCTCACCGAATAATCTAGTGAGAGGAGTTTCATGTTTTATTACTTTACTTGGCATCCT
ATTGATTAAGTAAGTGGTAGCGATGAATGCCTCATCCCAAAACTTCAAGGGCACGGAGGC
TTCAGCAAGCAAGGAGAGTCCAACTTCAATGATATGACGGTGTTTGCGCTTAGTTGATTC
GTTTTGTTGATGAGCATGGGGCATGATACATGATGAGGGATGCAATTCTGGTAAAGAAGG
AGTTCAGTTTTTCATATTCCCCTCCCCAATCGGTTTGAAGAGAAAGTATTTCTCGATCAA
AGCGTCGTTCTACTAGATTTTGGAAGTCATGAAACTTCTGAAAAACTTCAGATTTGTGTT
TGATGAGGTAAATCTAGTTAAATTTACTGAAGTCATTGATACGTCTCCAACGTNNNNNNN
NNNNNNNNNNNNNNNNNNNTATTATCTTGTCAAACATTGGATATTTTGCATGCCTTTTAT
TT