morexGenes - Barley RNA-seq Database

Contig contig_2556658

Source Contig contig_2556658

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2556658 (1879 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_2556658

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_40168	2	1037 bp	MLOC_40168.2	Available	Available	LOC_Os05g25840.1, FRAME:-2, EVALUE:6e-42, 13105.m02649 protein ELMO/CED-12 family protein, putative, expressed

CDS Structure of MLOC_40168

Contig Sequence (1879 bp)

>contig_2556658 1879 assembly3_WGSMorex_rbca.fasta
AGTAGGTATAACTCCCATCTTCTACTCTCTACTAGCAGAAGATCAAACCGATCCGATCCA
AAGTATTCTATCAAACATTTCTATCTTAAAAGAACGTACACAGGGATTAACCATATCTGA
CCGGAGAAAGCAAGAATTATTCAGTATTTTCACAACAATAATTTCGTATCATGAGCACTA
AGCACTGGCAAGAAAGAAGGTCCACCTGCAGCTCGGAGAGCTCCTCAAGATACTCAGTCG
GGCAGAGATCAGGCCGCGTGGACAACCCCTGTCCAATCTTGACGAACGTCGGGCCAAGCC
TTGTCAGTATGGTTCGCAGCTCGACCGCCCTGGCACGCCTCTTCGCTGATGAGGACGACT
CCCCCCTCTGCTGGTCGAGCAGCAGCGTTAGCCCGAATGCCCCCAGCTTCGAGAGCACCT
CCGCCGCTCTCAGCGCCACCTAATTACACAGCAGGCAATCCACACCATGTATGTCAGATT
CTGAGAGCCTCGGATGCTACCCTTAGCTAGATCGAGGTTAAAGAATGCTTGGAGATTGAG
TCCAGGGTTTGCCTGGAAAGGTTGGGAGCCGTAGCGGGAGGCGAGTAGCTCGGGGGTGTA
GACGGTGGCGGCAGCGGCTCGGGTCATGGCGCGGGACTCGGCCTGCAGGTCATCTGCCCG
GTCGCGGGCGAGGGAGGGTACTACGGGAGGCGAGGAGCGCGGGGAAGGGCGGGGAGAGAG
CTGGATGGAGAGGTCGGGGGACGGGGGCGCCGCAGTGGAGGCGGCGCGGAGGGACGGGCG
GCGGCGGAGGCGGCGCAGCCCGCGGCGCGGGTACGACGGAAGAGAGAAGGACACGGCGGC
CGTCGCTGACGTGGAGGCCGCCATGGCCGCCGGAGGAAGGGGTGCGGACTGCGGAGATGG
GAGGTCAGGCTTTGTGCGCGTCGGCAGCACCGCGTGTTTATTACGGTAGAGTCCCACCTC
GCTTGGCTTCTTACGGAGGAGGTTTGATTTGCGCCACAGAGAACGCGAGGAGACGGGTAG
CGTCCACGGCACTTTCTTTTTGGGAAACACTTCCCTACAAAAGTCTGGTCTCGTCGGGAA
ACCATCTGTCACACTCGTCGGGAAAAGTTTATGTGTATTTAATCTCACTGCTCAGAGATG
CCCTTAGGCTGGTCATGATGGAGAATAGATGACCTTATTTATTAACATGCGTGACACATA
GTAGACTAACATTTAACATGTTACGGTATCTATTTATGTTACTCTAACATTTTCTCTCTC
TTCTTTAATTGTCTGCCACATCAGCATGTTTGTTAGTTTCAAGTACATGATACTAGTACC
TAAGTTACTCTTACTATAGCTAGCCTTAAATCAAGCCTCATATTAACTATCTGATTTATT
GGTCCACACCCTATAATCTCTCCGTGAATTAACTCTCTTCATCTCTCATGTCCATTCCAT
ACACGTCACCGAGATTGCCATACGAGTCGACGCTTTTCCTCTATCGCCCAGCACGAGTTT
TTTTTACCCATAGATCTGAGGCCTCCGTTCCACCTGGTCGTTACGCCATCTTGTCCGGCG
ACTGCGCAGGGACTGACCCGCCACCTCCTCACCGAGGAGCTTGTAACCTCCCTCGTCACG
AGCCTTTACTCTGTTAGGATTGGGCCATATTCCACCTGCAGTTTTGGCGTCTGATCCACC
TCGCCCGAGGGTCGTCTCAGGATGGAAAAGAGGCTAGCTGGGATAAGCTCTTACACCATG
CAGGGCACAGGTGAAAGTGCATGCTATGCCACTAATCGACTTTTGGTGTTAATGACAACA
CANNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGTATCTCAGGATGGCAAGTAATTTAGTA
GATTGAGAATTATGTGCCA