morexGenes - Barley RNA-seq Database

Contig contig_2556062

Source Contig contig_2556062

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2556062 (2600 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_2556062

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_40066	1	901 bp	MLOC_40066.1	Available	Available	LOC_Os04g45900.1, FRAME:+2, EVALUE:3e-41, 13104.m04605 protein transposon protein, putative, unclassified, expressed

CDS Structure of MLOC_40066

Contig Sequence (2600 bp)

>contig_2556062 2600 assembly3_WGSMorex_rbca.fasta
CGTGCCGCTGCCCATGGCCATGGCCGTGCCGTTCCTCGTCGGCGCCAGCTTCGCCATCGA
CATGTGCGTGGGGAGCCTCGTCGTGTTCCTATGGCACAAGCTCGACGGGAAGAAGGCCGC
GCTGCTCATACCGGCGGTGGCCTCCGGCCTCATCTGCGGCGACGGGATATGGATATTCCC
GTCGTCGCTGCTCGCGCTGGCCAAGATCAAGCCGCCGATGTGCATGAAGTTCACGCCCGG
AAGCTAGAGGTTCCACTCCACACAGCGCTCGGATTTTACATAGGCGGTCTGCATATAGTA
GAAGCAAATAATACGAGCATGCATTTTGGGGGTTACGATTACGTTACATAGAGTGATGCC
GGGTAAATCCGGCGACTTGTTCATAAGAGTCTAGACTCTAGAGGGTCGTGTATACTGTAC
ATCAGCAGAGATGTCAAATTTTCAGAGCGACGAGAACAATTGCTTGTTGTCGCCTACAGA
CTACAGAGAGTATGGTGTCTTGCCTTCGTTTCTTAGAGCATCCCTGGCTCATCCCATCTA
CTCTAAGTTAGAGGAGTAAACGGTCGAGTATTCTTTAAAAGAGTAGGTTTACACTTCTAA
AAAAAGATGTCATTTTCTAACAAACCTTTAAACATAACGGAGTAAAACTTATTATCTGTC
TCGTACATTTCGTCGAACACTTGTTATGCAACGAGGGGCGACGATAATGATCACGAGAGT
CCTCATCCACTGCCGAACGCATCACACTTCGCCCATCTCATCGAGTTGTTTCCCGCTGCC
GCACGAGCTACTCGTGCTTTGTGGGTGAACGCCAAGCCGTCTGCAAAGCAACCCGGGGTT
CCCGGATGATATAGATGTCATAGAGCCGACTTAGATATGAGAGGAACGCCGTCGGGATGA
GATGACGAGGAGGAACGGATCCAAGACTAGAGACGATGGAATGAACGAAAATGTTTGAGA
TGTTGTTGCTGCGGAGTTGTGAGACTGGCTTTGCTTCATTTTATAAAGGATGGGGCGGGG
AGAAACCTTTTTCATTCAAAAACAAGAAAATATAAAGATAAAAAATCATGAAAATTTGTT
GACCGGAAATGGACGGGGCTGCGGGATGTCGGCACTTAGGAGAGCGGCAGTGGAGTGGAT
GTGACCGAGTGGGACAGAGGAGTGGACGAAATTGGAGGCAAAAATAAAATAAAAATCCTC
CACATATATGCGGACGAGTATATTTTACTCCCCGAAAAAGCCATGGAGCATTAAATTGTC
TTTCTCTGACTGTTATAAACGATCGATTAGATGCCGACCAGAGGAGAAAAATAAATTTAT
TCTCCTTTGACGGATTACAGGAGATCGGTTAGAGATGAGATCCGTGATTAATCACTTGTG
CCTCGAATCGCCGCCTGCAACGCCGATCCGCAGCCATGCCTTTCAGCAGATTCCGCGGGG
TCTTCTTCAACCTGCTGTCCATGTCATGGACTAGTGCTGTCGCCCCACCCCCGGCGCCAT
ATTCTTCTTCCACGGCATTTCTTGGCTCCATGCGCCGTGCCACTTAGCTCCCGATGGTGC
GCCCGGCGGACGGGTCGGCATCAAGCGCCGGCCACTCTCGTCCACTCCGCCGCGGTTCGT
TTGTTCAACTTGTCCTCCGCCCAGAGATTCTGCCTCCTCCCACGAGCACCACAGCTTTCC
GGGATTTCGTTTCGTTTGGCACATTGCCTCCCTCCCCGTCCCCCTTTTCCTCGCCGCCAT
TGCCCGGACCGGTGGGGTAAGAAGCTGACCGATCGACACACACACTGAACCGGTGCGCGC
GCCGGCGGTCGTTCCCGGAAGCTATTCCTATTCCCATTCCCTTTTGCATGGCTGCGGTGA
GCCATCTCGTTTTTTTTGGCCCCTCCATTGCTGTCACCTCGGAGGTCCGAACTCATCCAA
CTCACCCAATCGTTCAGTGATTCGGCGCAGAGCTCCAAGCTCCCAAGCAACATGATGCAC
TCGGCGAACAGTTTGCGTCATCCTCCTTATCGCCCGGGTTGTAGATGTAGCAATCGGACA
GTGTGCTTCCGTTCCGTGGTTGGATGAGTTCGCTGAATGATTGGGTGAATTGGGGATGCT
ATAGTAGGCGTGCGTATATACTGTTGCGATAACGAGGAATAAATCTCGGCCGGAAATCGT
GCTGGCTCCACTCTCTTTGCGCCTGCAACTCACGCAGGGCCGACTGGCCAAGCAGTGCCC
AGCTGGATGGATGTGCTCGCTCGTAGGCTTCTTTCTTCCCGCGCTAAGTCCATGAACTCG
TGTCAGATTGTTGTTCATGAGCTGGTTAGTGCGTGAGGGCTGTTGGGAGTGATTAGTTGG
AGCACGAACGACTTGACAAATGACAAGGACGCCTATTTTTATTTGGGAATAATAAAACGA
TTTTATACCCTTCACGAAATTATTGACGAAAATTCGAATGATAGCACAATCATGGGATGG
AGTACAAGCTAAGGGGCTGTTTGGTTTCTAGCCACACTTTGCCACAACTTACCTTAGGCA
AGTTTGATCAAGTTAGGTGGGTGTTTGGTTCTAGCCACACCTAAGGCAAGCATTTTTAAT
GAGTACTAAACCCCACATGT