morexGenes - Barley RNA-seq Database

Contig contig_2555757

Source Contig contig_2555757

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2555757 (4626 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_2555757

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_39997	4	2463 bp	MLOC_39997.1	Available	Available	LOC_Os06g39640.1, FRAME:-3, EVALUE:0.0, 13106.m04111 protein PINHEAD, putative, expressed

CDS Structure of MLOC_39997

Contig Sequence (4626 bp)

>contig_2555757 4626 assembly3_WGSMorex_rbca.fasta
CTTGGGGGAATATGCCGTTCCGGAGATTCAGTTGGTTCCAATTCCTCTACCCAACTAAAC
ACGAGAACGACCCTCGGGAACGGAATGAACCCGTCACATTCCACTTGATGACAGTAACCA
AACACACCCTTAAGAAGCATGTTTCTGCACATTTTCCAGACTTCAATATATAAGCCAAGT
TTTCATATTACGGAGAATTTTCTTGCCCTTAACAAAACATCGGCCAAATTTATACAGGAC
AAGACACCTAGTTCTTCACTCTTCTGGTCCTACATATCTAATCTAAACCTCTAACTCCTA
GTGTTAGCTGGAGTATATAGCATGCGTGGTTGCTAGTGTTTTCCCCTTGTCAGCAGTAGA
ACATCACCTTCTTCACCTTCTCTTTCACCGCGGGCATAGTCTTCATGGCACTTCCATTCC
TCCCGTTGGCATTCTTCACCGAGAGGCTATCTTGGTCCATGTAGAAACGTGCCCGGAATG
CGGCTAGATGAGCATAGTAAACAGGCGGCACTGCTCAAACAACACAACAGATCAAAGGCC
AAAGTTTAGATTTGTCACCAAATTGTTACGTCGAAAGAGCAAATGTATTCAGCAGGAGCG
CAAGAAGGAAGAAATTACCGACAGAAACAGATCGTGTGCATCGCGCATACCTGCAACGGA
TTCACATAGCTAGTAAGATATTCTTCAAACTGAAAACGGACTCCAATATTGGTTCTGAAA
AGGTATCATGAATTATAGGAGGATGGGAACACCATACGTGTAGCAAAGGTTGTTTGTCAA
AGTCTGCATTTCGTCAGCCGTGAAATTGTTCTCGTCCCACAGAACATGATAATGTGCTGG
CTTGCTCGTGCCCTGGCAATGTCACTGACATTAGCTAACTCATTATAAGATCATCTCAGC
TTTAACAATATAATTATTGTACAGGCCGTTCTCTGCATTTTGTACATTTAAGCTTATAAT
CACAGCCGCGAAATATGAAATCAAGGCAATCCTTTCAAAATTCAATCAGACACATGCTTA
CCTGAATTCCAGCATGGCTGCAGAGGTAGAAGTCAAACTGTGTGGGATGGCATATCTTCG
AATCAACAACGGTGCCTATTTTAGGAAGAACCAGTGAGCAGTTATGAAAATTTATTTGTG
GAAATAAAATCTAAATATTAATAAATGAGTTATTAATATCTTGATGGTGGAAATGACATG
ACATATACCAGGCAGAATATTTCCGCTCTTGTCGGTGCTACTTTTATCGTTGTGGTTGTT
TGCAAATAGTTTTGTATGGTGGCGCTTTTGGACTATCACAAACGTCACTGGAGGTTGGTA
ATTTGGTTCTAAGGACGCACAAGCCTGAAAATATTCAAGGGGTTAATAAGGATATTTTAT
CATGCAAGCATGTCAAAATAATAGGTAGAACATCAGTTGACAACCTTACGGATAGCATCT
AACTCGTAAAGTAATACTTGATGGAACTGTCCTGCGCTAACACCGTCCCTGCAGAAGAAA
AGAGTCTGTAACTATCAGAACTTCCATAATACACAAAACGGTGGCATTAGCAAGCCTTTT
GTACTCTGCAAGAGATGTCCAACATGCACAGTGAAGTACCTGTAGAAGATTATTCTCAAT
GGTTTCTGCCCTGTGGCTTTCCTGAAGGAAATTAGAAGCTCCCTGTATGAAGTTACATAC
AGAAAGGAAATTCGTCAAGCTCATTCTGTGCATATTTTTTCTGAGAGATCCAATGGTCTG
AAGTTGGATGCTCTATTTAACACTTTCACCGTGCATGATGACGGATGATCGAAATGCACA
CATTGTTCTGTGCTTCTTTGTCGTCTCGAATGAACTTGTGCATTATCTCCACAGATGGTG
CGTTATTAAGGGTGCGACTCAGTGCATGAGAAATACCTGATCATGCCTCCGGTTACAGTG
CCTCGCTGAGGATCATGCCATGTTTTGTAGAGGTCCTGGATGAGCTCTTGCCGATAAGCT
TGAGCACACACCAATCCAGCGTACTTTGTAACTTCTGGCCAGTCTTGAGAAGCAACAACC
TGTAAAAGCATCGCATTAGAGGAAAGTCACATGGCAACTTGGTTAAAGAGACAGCAGAGT
AATGCTAAATCTTACTGCAGCAATCGATGGACTGGTATCCTCTCTGGTTTCAGGATGTGT
TACATCCGCACCGAATATTATTGTCGGTATATCACTGACCAATGGGATCCTCCGGCTTAC
CGCATCCAAGAGTACGGTATTTCTTCCCCCCATCTGATTTCACAAAAATTGTCAAACGTG
AGATATAGTGGATTGTCTCTATCACCAGAGCTAACTTATTTTCTGAACCTGGAATCTACG
TGTGAAAAGAAGACCGATGCTCCCAGTTGATAAATACCTTAACATTGATTTTCAGCGAGA
CATTCACCAAGTATCGTTTGCAGATCTTAAATACATGCTTAGCTAAGCAGCACTGTGATA
TTAATCCCAATTCGGTTTCACAAATGCGCTTTATGTCACCTGAAAAACAATACTCATTAT
ATGTGAGAAAAGCAGAAAGGACAAACAGAGGACTGAAAAATATTTGCAACATAGTACTGT
ACAATAGGAAGTGAAACTGCATCCTCACCATACAATGGGCCATTGTTGTCGGGGAGGATT
ACCAAAACAAGCTCAAGCTCCTTGCCCTTGAGTTTTTTCAGTGCAGCGTTATACACATGC
TTAAGCGCCTGTACTGCTTGCTCTGGTCTAGCCGAATACATTGGTATAGCAGGCTCACTG
TTGAACTCCTGCAATGCCATTTAACAATTGACAGTTACTTGAAAAATATATTGCTATTCT
GCAACTGAAGAAAGTAAGCCTCTGTATAATTAACTAATATACTAGCATAAATGAGAGGTA
TACCATGCCTAAAATTTTACACGTTTGGGCCAACTCCTGGCAAAATCCACTGGCGGTGCT
TTCTTGAACACTTCTTGAGAAGTTAATGGATGCCCAATGATTCACAGTGCATCCATTGAC
AACTTTCTGCAAAAATGATTTTATTTCAGGGGTGAATTGACAACTTCAGGCAGAATAGTA
ATTCTACTATAACTGAGAAGTGATGGCTTCAGCAGAGTGGATATTAACCTTGTTTTTCAT
GTCCCATTGGCCAACGCGAGGTAAGCACTCTGATTCTTTTCCAGTATCATGATATTTTAG
CTTGACACAAAAAGGTAAGTCAGAAATGAGCACAGAATAGCTGGCCATAGCAAATTGGAG
AATAGCATGGATCTTACCCAGGGTGCAGGTAGAATTCTTGCTTCAATAGAGGTGAGTTTG
TTGCTTATGTTTATCCCAAATTCCTTCGCATATGGATCTTGATCATATCCATTTTGGTGA
ACAGTCTGAAAACAGTTGCTTTTAGTCTTTTATAGGCAATTTTGGTGGGAAACGGACCAT
GTATCTACATCACTCAATGTTGTGTAATGAAACAGAAGAAGAATCAGCAGTGAGCAGTGA
AATTGTATTCTTTCCTATCAGTTTTCTAGTGAATTATGTTGTGGCACTGAGAAAAAAGTA
CATGCACATTTGCTTCGTAACTAAGCTTTGCCAAGATTTTCCTGCTAGACTGCGTTGGAA
GCTAAAAAGGGTGTGGCAAAGAAATTGGTGTCAACAACTTTGCCAAAAGCATACTCAAGT
ATACCAAGAAACACTTCATACCCGTCGAATATCCATTTCCTTGTCTCCAGGCCTTTGGCA
TGTAACTTTCAGTAATGATGTGATCTGCTTTTCATTCAACTTCTTCTTGTATCTCTGACC
TTCAACAATCTTGCAGGCCTGTCAATAAGCATCTCGTGTCAGGCAGGATTCAGCAATAGT
AAAAGCATCATGTATTGCACTAACTGATAGAAAGTTGTGACAGCACGAGACTAAAGACGT
TAGTTACTGACCTCCATTGGTAGATAATTTGGCTTCTTTTGGTTTCCTACAAGAAGGCAG
GGAAGATGTGGTTGCTTTATGGCAAAACCATACATTTCCTTGAAGTACTCTACAACTGAT
TTCATTTCATCGTCAACTGGGAAACTGTTATAAGAAAAAGAGCAGACCCAGGTGCTGAAA
TGTTAGCCCAAGCACCACTATTTTGTTTTTTGCATGTTGAAGCACATGTTTGCATGTTGC
AAGGATGCCAATATGCCATGCACCATCAATAGCTATGTACTTTAGGAGTTAGGACAAGTT
CCAATAAACATACAGTTTATCAACATGCTAATGTATAACACCAAAACATTATTAACTAAG
CCCTCCTTTGGTTTGTAGGAACTCCATAGGATAGGATTCATATAGGAAAAGGTCAAATAA
ATCTAGCAAAGCCGTGGATGAGGCTGGCTAATGCGCTTAAGTTTAATCAGATTCAGACTT
ACGGTCAGCAGGATGACGGTCAGTGCTGAAACCAATGGCCGGACATCCCACTTAAGATAA
ATTCCTCTAGAGCCCTTTGGTTTGTAAGAATGGATTCCTATTCCTATGTAGGATTGTGGT
AGGACTAGGGTTCCTACCGGGCCTCCGGCGTAGATTGTATGGGCAAGGAGGAGGGGAGCG
AGGGCTGGAGCGGACGCGCCGGCGAGAGGGCGCCGTCGCGGCTAGGGCTGGGCGCGGCGG
AGGCTA