morexGenes - Barley RNA-seq Database

Contig contig_2555639

Source Contig contig_2555639

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2555639 (2502 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_2555639

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_39962	2	919 bp	AK252683.1	Available	Available	None

CDS Structure of MLOC_39962

Contig Sequence (2502 bp)

>contig_2555639 2502 assembly3_WGSMorex_rbca.fasta
ACTTCATATTAATGTTCTTTGTAATCTGTATTCTGTTTATAATTCCGCAGGAGGCCGTGA
AGCATCTTTGTGTGTGTGTGAGAGAGGGCGTGGAAGAGAGAAGGGTGTGGAGAGATATGG
AGGGTGTTAGACAAAGTAGGGCGAATGCGAAACAGTTACGCATTATATTCATATGTGCAA
TCAAAAAAACAAATTAAAAGACCCATGGCAACAAGACAGGCAACCAGAGAAAAATTTAGA
CCTATGATTTTTGATATGCCTTGTATCATGTGCGTGCAGTTGGGCAAAAAAAAATTTAAA
AGCCCGTGGCAGCGCACGGGCGTTCCACTAGTCCCCGTAAAGGCCCACCCGTCTAGCATT
TTTATCTCACACGACCGCGCTCTGGCGGCCATTCGCCGATCTTCGTCTCTTTCCACTATT
CACACCCAAGGCTTTTGCAAAGAACATAATGAATGTCCACAACATTCTGCTCCACATTTA
CAGTTGCAAATTTTAACGCCAAAACATGACGGCACGTGTTCTATACAGGAAAACATTTTA
ATACCACCTAAATAGACTGTTTTTTTTTACTAAACAGAATATTCAGTTTGTTCTATTTGT
AAAGAAACAAATGAGCACGATTTTGCAAGTGCACAAGCTATAGGCATGGTATAAACATCC
ACGATTTTTTTGTCCAAGTGGAGATAAGCATTTACATATTCTCAGGCACCAGGAGTAGCA
TTCCAGAAACATTGCCTCAATAAACAAGAAACTTGGCAAACGCAAGACATCAATACATCG
ACGATGCAAGCAGCAAGAAAACATTGATACAGGAGGGTTATGAGCAAAACATATAATGTT
TGATATTGGTATAAATTAAGCTAGTTCTGAATATTAAAGCATGCAGTTTGTACCAAGTTA
AAGACTGATGGTGATTTCTATCAACAGGCAAAAATACGCGTGTAGATGCGATCGGATCAC
ACAACCTTTCTGAGGTGATTCTACAACAAGGTGAATTTTTGGAATGCGAGAAAAAAAAAA
AACCCAAGTGAGTCTTGTTGCCGCTAGTACTGCCCCTGTTCTGGAGAGGTCAAGCAGATC
CATCCGCTGTCCATTCTTTGTGAATCTGAAACTCAAACGATGTTGGGCATAAATTACAAG
TGCTGAGTTGCCATTTCCTACAGAAATAAAGCTCCCCTGGTAAGAACGTATATTTTCATG
AATATGAAGACAAACTAGGCACTGGGAGCATTCCTAGTTTAATAGTACTAGTAATTTACT
GACATGAGACAAGCGTGGAATCATGGTGTCAATTGTTTATAAAAGTGCTGCTAAGTTGAG
GAGGGCACGGGTGTGACAAACATGTCTGTGACGCTGCAATAGCTTAGCCAGATAAAGTAC
CTATGGCATGCAAAGAATGTAAGAAGCCATCATCTTCTGCTTGGAGCAGCAATTGGCGCC
CTTTGTGCTGGAGCTCGACCCTGCCCTCCAGCTTGCTCCTCCGGTATGTTGGCTGCTGCC
GTGACGGCGTTCATGACAATGAGACCAAGAGGAATGATGTACATCCACTGCAAAGCACGA
AGCAGCAGTCAGATTCAAGGAGAAGGATACGACAACTTTTCTAGTCACGCAGACAACAAA
AAAAATCAAACAATATACACATGATATTTATAACTGTACTCACATATTTAGCCCAGAAAG
ATTTCTCAGGTGGTTTCATCACTTCACCAAGTCCACTCTCAGTTTCTATTAATTGTTCTA
CAAATGATGGAGTTCTGCAAGTGCACAACTTAGTAAGAACTAGGAACCAGGTGTCATTCG
AGAGAGGATAGGTTTGAGACTGTTCTTTAGCAATAGGTTTGTTGCTGGAAAAAAGTCACC
AGATAAATGTGAACTGCCACCTCTCTGGTGGCGTATAATTTTCTTGACCTTGATAAAGAA
AGATTTACCTTGGTGCTTGGTCAGCAGTCTTCAGAATAGTGTACGAATTGAATGTCCATT
TTGATGGCTGGAACAAGAATTTCAGCATTGTAAATATCATCAGCAGACGGGTGAAACATC
AACATATCCTTCTGTGATGTTATTTTACCACAATTGCGGAGGTTTAATCTTGGCAGTATA
ACTCTTAAAGTTATATGTTTATAGTTTGTGCATGCAATTTGCTGGGACGGTACAGTTAAA
AGGTTATAGGTTATTACTATCAATTATTGACCACATGCAACTCCATAACCAAGGTTTCAA
GCAGGACAACTTACTACTTTCATTGGCCTGGGATATTGGCAGCCACCAACTGAACCATAA
TTAACTGCCAAAATATTTACACCGTCCTGCAAATGAAACAGCAAAGCTTAATGTGAGCCA
AACACCCAAGAGCTACAGAAAATGATGATCATTCCTTCGAACATTTCATTCTGTGAAAGG
CTATTATCCTACTGCATTACCAATTTATCACCTACAAAATACTCCCTCAGTTTCTAAATA
TAAGCCTTTTTAGAGATTTCAATATGAACTACATACGGATGT