morexGenes - Barley RNA-seq Database

Contig contig_2555397

Source Contig contig_2555397

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2555397 (857 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_2555397

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_39912	1	484 bp	MLOC_39912.1	Available	Available	LOC_Os10g10190.1, FRAME:+3, EVALUE:1e-29, 13110.m00915 protein ATP-binding region, ATPase-like domain containing protein, expressed

CDS Structure of MLOC_39912

Contig Sequence (857 bp)

>contig_2555397 857 assembly3_WGSMorex_rbca.fasta
GGTACGCTGGTGGGGTTTGGGGGGGGGGGGGGGGATCCAAGGCAGTGCCTCATCCCATAA
TGGCGGAAAAGTTACAAATATTTCTTGCATCTGCAGTTCCTATCATAACTTTCGTTCTTC
CTTTTTTTTGTTGTCGAACATGATGGGTTGAGATGTAAAAATGTGTATCACCATTCAGCA
TATGTTTTTGACATATTAAGGTTCTGAGCTGGAGCTTACCATCTAAAACGTACAATTTTA
GCGATTCAGTTGTCGAAATACAAACTTATTTTGTGTACAAAAATATATATCTGCATGACA
AGTTGGCCGTAACTTATTTTCTTTATTAAAAAATTATCCTTTGCAGCCCTTCTGGAAGGT
TCTTCAGGAAGGATCTAGCAGAGGGAGGAGTGTTGTAGGTGAGTTTTATATGTGAAATAC
TTTCACAAGTGTTACTTTTCTTTTCCTCTGGGATGACACTCATCATGGTTTTTAGGTGTA
CTTGAGGCAAATTTTATTGAACCGGCACATGACAAACAGGATTTTGAGAGGACTCCACTA
TTCATTCGTCTGGAAACTAAACTTAGACAAATTATCATTGAGTACTGGTACGTGTCTTGG
GATGCTCAATCTAAAATGAAGATAGCGCATCATGCCTATATTCTCTCATAGTTATCAAGG
AGATTAAAACCACATTTTAAATACTTAACCAGCTTCATATTAAAGAAGAAACATGTTGCT
GATCTCTTTTGTCATATTTAGTGCCTTCTTATTGAGTAATTCGCTTCTGAGCACGGGCTC
AGATGCTCCCGCTGACGAAAAAAAAAATACTAAAAAAATTCAAAAAAATCCAATTTTTTT
TTGAGTAGTAGACAATT