morexGenes - Barley RNA-seq Database

Contig contig_2555241

Source Contig contig_2555241

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2555241 (1681 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_2555241

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_39877	1	1189 bp	MLOC_39877.1	Available	Available	LOC_Os12g36670.1, FRAME:+2, EVALUE:2e-46, 13112.m03756 protein F-box/LRR-repeat protein 3, putative, expressed
MLOC_39878	1	318 bp	None	Available	Available	None

CDS Structure of MLOC_39877

CDS Structure of MLOC_39878

Contig Sequence (1681 bp)

>contig_2555241 1681 assembly3_WGSMorex_rbca.fasta
CCGCCCACCCCTCCACCACCGCCCCTGCGCGCGCGCGGGGGCCGCGCCCCGCCGGCCCCT
CCGGGTCCTCCGCCGGGAGCCGCTCCCTCGCCTGCTCCGCGCCTTCCCGGCGCTCGAGCG
CCTCGATCTCTCAGCCTGTGCCTCGCTCGACGACGCGTCTCTTGCAGCCGCTTTAGCCGG
CGCGGACCTCGGCACCGTCCGACAGGTCTGCCTGGCGCGGGCCAGCGGAGTGGGCTGGCG
CGGGCTGGAAGCCCTCGTGGCCGCCTGCCCCAGGCTCGAGGCTGTCGACCTGTCGCACTG
CGTCGGTGCTGGGGATAGGGAGGCTGCCGCCCTGGCCGCCGCCTCTGGGCTGAGGGAGCT
AAATCTGGAAAAGTGCCTTGGGGTCACTGATATGGGGCTCGCCAAGGTAGCCGTGGGCTG
CCCCAGACTGGAGACTCTGAGCTTCAAGTGGTGCCGTGAAATCTCTGACATCGGCGTCGA
TCTGCTTGTCAAAAAGTGCCGCGACCTCCGCAGCCTTGACATCTCCTACCTAAAGGTTAT
ACTCCCATATGAGCTGTTTGAACTCATTGCCCTATGCAGTGGAAAGGTCTAGGTTCGGGC
TCTCGGGTTAGGACTAGAACCCTTGATAAACAGGAGAAACGATGTGGCGACCAACAGAGT
TAAGAGTGGGACTTTGATGTTTATTGATTGCTTTTAGACCCAGAAAATGTCAAAGAGATT
CGGGGTATTGGACCATTGGACTTATTAGGTGGTTCATCCAGTTTAGAGATTGATGCATTT
GTTAGGTGTCTTGTAGGGTAGTATGGGTCAATTTATGCAGACACCTTTGGAAGAATGCAG
CTGGAATAGGAAACTTTCTTGCATATCTGTTCTGGTGGCTAGTATATAGGCTCTTAAAAA
AACTCGTGACCTCTTGGATCACACTTTAGTTTCATCTTCCTTCCCAAGAAAAGTTCAAAT
TTGGTGCCAGATGGCAAATACATTTGAAAAAACTGTACCGTATGATAGGTACTGCTATGT
ATTGTAGGAGTTAGAGGGGGAAAATATGGATTTTGACCTGGACTAGTTCTTGGTCCTTTT
GACTAGGAAATTATGATGCGTTGGTTGAAGTTTACCTCCGTATATGTTGAATCTGACTCT
GTTGCTGTGTAGATCAGACTTGGCTCATTTTATGGAGTGCACTCATTATATCTCGGTGGA
ATTTATAATAGTATTTTGGTCAACAACAACAAAGCCTTTTTATCCCAAGCAATTTGGGGT
AGGCTAGAGATGAAACCCAACAGAAAACAGTAAGAACCCAAAAGAGAATAGAGAAAGTAA
AAGTAAACAAAATAAATCAAGGTTCTGGTACATGAACTACTGACTTCCATCATTCCATGT
AGTCCTATCAAGAGACAAATCCCTGGGTACATCCCAATCCTTCAAGCCTCTTTTTATCAC
CTCCCCCCATGTCAACTTTGGTCGGCTCCTACCCCTCCTAGTATTGTTGCTACTCTAAGA
ATAGTGTATTTTGGTCACTTCAGAGAAATTTTATTTTGGGTCATGTGTCATCGTACCATG
TTGTTCAGTATTACCCCCTCCGTATCAAAATATAAGACGTTTTTTGACACTGTAAAATGT
TAGGAAGTATTAGTATTAGTCTAGGAGTCCTCATTAGTCTATTAGTATTAGTCTAGGAGT
C