Contig Data
morexGenes
Links



Map Locations of contig_2555054 (4651 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_2555054

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_39847 1 997 bp MLOC_39847.1 Available Available LOC_Os02g54160.2, FRAME:+2, EVALUE:5e-61, 13102.m12340 protein AP2 domain containing protein, expressed





CDS Structure of MLOC_39847






Contig Sequence (4651 bp)

>contig_2555054 4651 assembly3_WGSMorex_rbca.fasta
GCTTGGTACTTTCAACAGTGCTGAAGCTGCTGCAAGAGCTTATGATGTTGAAGCACGCAG
GATCCGTGGCAAGAAAGCCAAGGTTAACTTTCCAGAGGAACCAGCAACTCCTCAAAAGCG
TCGTGCTCGCCCTGCTCCTCCTAAAGCACCCAAGCCAAGCGCAACACAGGAACCTGCAGT
CAACAACCTTGCCAACCCAAGTGCTTTCGTCTACCCATCTGCTGACTTTGCATCAAACCA
GCCACTTGCTCTGCCTTACAACATGTCATTTGTTCCTGCAATGAACTCTGCTGCCCCTGT
TGAAGCCTCTGTTATGAATCTGTACTCTGACCAGGGAAGCAACTCCGTTGGCTTCTCTGA
CCTGGTCTGGGATTTTGACACCAAGACTCCAGATATATCACCCATTGCTCCCATTTCTAC
CACTGCTGAAGGAGCGGAATCTGCACTTGTTCAGAGTGACGCCTACAACCCAGTGGTGAT
TGCTGAAGTACCTGAATCTGTACTTGTCCAGAGTAACACCTACAACTCAGTGGTGCCTCC
TGTTATGGAGAACAATGATGCCGATTCCGAGCCTTGGATGAAGTTTCTTTCGGATGATGG
CATGGACGAGTCGATTGACAGCCTTCTGAACTTTGGTGTGCCTCAGGATGTCATTGGCAA
CATGGACCTTTGGAGCTTCGATGACATGCCCATCTGTGGAGAATTATGCTGAGTGATCCA
AATCCTTTATATAGAGATAAAGGGTAAGCGTTTGCGCATTGCATGTTCAGTCTGAGGTTG
ACAGTATTTTCATCACTCTGAACTTTGTGTTGCGTGTTTCAGGAATAAGAGTATGGGAGA
TTGGGAAGCACCCTGTTGTCACCTTCGGCTAGCAAATGATTATGTCCAAGCTTAGATGCA
AAAAAGTCGCATCTTGAGTCTCCTTTGTAATCGACCCTTTCCCTAGTTGACTGTCTCTGT
GTGGCAGCCATTTATGATGAACCGTTATCTTTATCATTTGTAACTTTTATGTCAGTCGCT
ACCATTTCTGAATGTGAACAGCATGGATTTGTGTCCAGTTTGCTTTAATCTGTGCACTTG
ATCGTTTTTTCCTTTAGTTCTTCCTGTTTAATTGGTGATAGAAGTAACCTATATATCTTC
TGAATTTGGTAAGTTTATGGTTGTTTGCATCATATTAATGCAGGGGTTGGACATTTCAAC
TTCTTTTTTGAAAGAGAGTGTGTTAGGCCAAACTTTCCTCTATATTGTACCTCTTCACTT
CAAGACCAGGCAAAAATATACCAGATCTATTAATCTTTGATACTAGATGCGTGATCATAT
GGAGTCGTTCTTTCTACATGTAGTTCTCCTCACCAATATAGTTCTTAGATAAACATTTAG
TGCGCCTAATGCATGAGTTGAGGGATTTGTTCCATTTCAGTGCATTCTTATAGAAATGTT
CCTTGATTTGATTTGACGTCGGCATAAGTATGTTAGTAGTAATCTTGATTAGAGGGTCAA
CTAGTTGTGTGGATGTACACGGCGTGGAAAACTGCAAAGTCTGAGACCATAGTCCAGTAG
GTTTGCTAGTTTTCGTTAGTATAGGAATTAGTGTTCGTGTAGGATTAGTACTTGCTAGAA
TCAAACGTGCGCTTCGCTGTGCCGTTTTCAATTGTTATGTCATATTTCCGGTTATAATCA
TCAAAGAAGGAATTCTTTAATCAAAACTTAGGATGCGGTCAAATGTTTTAAGTTGAAAAG
ATATATTAGCTAGGTTTTAAGTTGTCAACAAAAATGGAAAGGAAAGACAACAGTGTAGGA
TCTAGTAACGGAACCAGAAAGCTGGCCTTCTGGAAATAGTGATTAGAATAAAGATGATCT
TGAATAAGATAGCCAGTAAAGAGACCAAAATATGCAAACAAGTTTGTTACCTGAATCAAT
AGATCTTCAGTGAGAGGAGTGAAGCCAACTGTTATTGTCGACCTCCTGACAAATTCAAAA
GATCTAGTAAGTGTGACATGACCATCAACTAACTTACATCTCAAGCAAGCTTGATTCCTA
TAGAGCATTCATCAAAGCATGATGTCGCAATTCATGACAAATTAGTCTTTCAAAACCAAA
AGGACAGTGGTGATGTCTTGCACAACGCACATAGTTTCAGACACGCTATGGAAGTATATA
GATAAAAGAAGGATTATAGTTCCAAAAAGTAGAGGTTTTAGTACTTCCAATCATATAAAG
CTTGGACATCAATCTTTCCCAAGTCAGAGAAGGCGCGTCTACAAATTAAGAGTATTTTTG
TATCAACCTGCAATTTTTTTTAATATGCATCTAAAAGTAGAGTGCTTGCATATGCGCCAC
TCATCATTGTAATGGAAGGTGTTTATTGCAAATTTAAACTATATTTAGTACCTAGGGCCA
ACTCTTTGTGAAACAAGGGCATCGATCAATGATGCTCAGTTGGCTGTGTCCCTCAAGCAA
TGAACACATATAGAATGAAGACTGAAAGTCAGAGCACCATGAAATAATTTAGAACTTTTC
GTGCTAGAATGCTGAAAGGTTATTGGTCTAGGTCTATGTAGCAGATTTCAGCAGCCAATG
CTAATCAGAAGTTCTAAAAAAATTACCTTGACATAACCATGGGATATGATATCTCAACTT
ATTTTTCTTGGCAGACTGATCACCTAACAATGCAAATGTGAAATTGTTCTTGTTTAGAAA
CAAAACGACATAATTTGATGCATGGGAGTTCAGAATCCAGGAAGCAGACAAATATGTCAG
ATTAGTCACGCTTGCACATAAAACTCTTACTCTTCTAAACAGCATGTGCACTTACAGTTC
CTTCGAATATCTTTGACAATGCTTGCTGGACACCCTCTCCTGAGGCATTCTCTAGTCCTC
CTGCCATCCAACCTGAATGTACCAATGGGTCCTATTAGTGCACGTAGAATGAGCAGAGTA
AACTGCAAGTAACCCAAACAAGTGTTGCCATTTTGCAACCTGGGAAAGCAGAGTAAACCA
CTACCAAGTAATACTACATACATAACCCTATTTTCCTGGAAAAGCAGAGTAAACCACTTC
AAAGTAATACTACATACATTACTCTTTAGTTCCCATCAGTAAGCGACATTAAGCAAGAAA
TGCAGCATATTGGAATATTAGATTTCTCGTAATCTTGTAATGAATACTATTTATGCCAGA
CCTAACCACCCTTCTATGAACAGTAAAAGATGTAGTGAACACTTACAGTGAATGTATATG
CGAAATTTTGCTCACTGATCTTCTCTGAACGACCACCTGTATGCCTAAATCCTAGAAATA
CAGGAATTGCTTGCAGCTACCATCACAACATTGCAAATACCTTGGAAGTCAATGGAATTA
ACTTTATTTTTTAAACAGTTGGAAAGGTAGGGCATCATTATATTTCAAAAAAGAACTACA
TGAGCAAATTGAAGATTTATTTCAAATGCATAATGTCTTTCAAAAGCACGTCTGCACCGG
CTGTCCACATTTCTTGTCCCGGAACTTATAGGAGCATCTTCACGAAATGAACTGACACAA
TTAGCAAAAGAATTACTGTATGTTGATGCTAGAACTTCAAATAAATGTAGCATTGTCCAG
CATACATGATAGCTTTTTATCGACATTACAATCAAACACAGTTGTAAGCATGACTTCCCT
ACATGATTTAGAGATCGTACAAAACCATTCGTCCAGCATGGTAAGGCCACTAAACTATCA
AAATAAAAAAACAACTAAACTGCATGTATATCTCATAAGAAGTTCATTAATACACTATTA
AACAACATGTGCACACATCTAATCTGTGATTTCCCTAGTTGCATTTAGTACCAAAGAGCT
ACATTTAGATTTTTCATGGAGTGGATCTGAATAGCATAATCTATACTGCTATGTAATACC
TACTCTTGACCTGCAAAAAATTTCAAGGGCAAAAAACAATGTCCTCGAGTGATGTATACC
AAGCTGAGCATATAACTTAATTTACTGAAACAACACAGCGAAAATATGATAGCAGAGTCC
AACAATTGTAAAATTCAAACTGATGTGCATGTAAAAGTTATTCATATTCACAGTAGTTAT
TCTGGGATATGCAAAGTCATTTGCCTTCATTTTAATCTTTGACCTTCCCTACCTTATATC
TGTAACGTGTGTATATCTTCTCTATTAGATCCTTGTTTGTGAACTTATAAATGATCTTAT
TTCTGAAACTTGTTGCCACTCCCTTCCCTCCAGAGGAGAAGACGGACAGCAAGGCACACA
CGGTGCGAGATGGCGAAGGGGACGACCAGGGCCCACTAACAGTGACAGAAGACTAGTCTA
CGATTAGGAAGCGTGTGAGTGACGATGGGGCTCAGAGCGGCCAGGCTATATGTGTGTGTG
CATGGCTACAGAGTGGAGTCAGCCTTGTAGAAGAATTATTTCGAATCTCTCTATAATCCC
CTCTCTTCCAGCTCTCACCTACTCTTTCTTCTTCCTCAAGCTCATCTGAATTCTCTTGAT
CCCCGCTCCTGTCAGGCTTCGCTTACTGATGAGAAGAAGAACAGGGGAATTCCGCTCGAA
CTAGCCACTTTACTCACTGATTTAAGGCCGAAGGCCGAGTTATATTACAAAACCAGCCAG
GAACACTGGCGGCGCACAAGGGGGAAACCCT