morexGenes - Barley RNA-seq Database

Contig contig_25548

Source Contig contig_25548

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_25548 (315 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location

Predicted Genes from contig_25548

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_39797	1	141 bp	MLOC_39797.1	Available	Available	LOC_Os12g09120.1, FRAME:+1, EVALUE:4e-25, 13112.m00966 protein mRNA-capping enzyme, putative, expressed

CDS Structure of MLOC_39797

Contig Sequence (315 bp)

>contig_25548 315 assembly3_WGSMorex_rbca.fasta
AGGAATCCCAAATACGTACTTGTTCATTGTACTCATGGGCATAACCGTACTGGCTTTATG
ATTGTTCATTATCTAATGCACACACAACTGTCTAGTGTTACCGAGGTGAGACAACTTATG
CTTCAATTGTAATTTATCCATTTGTTGTCATATTTTTTTCCCTTGGCTAAATCTTTTGTT
TGCTAGGCGTTAAATATATTTGCTCAAAGACGACCTCCATAACCAGAAACATAAAGAATT
TTATCTAGGTATAGGTGTCTCAAGGTATACCCAAATAAGCGCCAGACTTACATATCTTGG
GTATGACAGAAACAA