Contig Data
morexGenes
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Map Locations of contig_2554492 (4915 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_2554492

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_39738 4 3555 bp MLOC_39738.1 Available Available LOC_Os06g47570.1, FRAME:+3, EVALUE:0.0, 13106.m05051 protein PPR repeat containing protein, expressed
MLOC_39739 1 431 bp MLOC_39739.1 Available Available None





CDS Structure of MLOC_39738






CDS Structure of MLOC_39739






Contig Sequence (4915 bp)

>contig_2554492 4915 assembly3_WGSMorex_rbca.fasta
CGCGCCGCCCCCCCGACCCCCCCCCCCGCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCG
CCCCCCCGCCACCCCCCCCCCCCCCCCCCTCCCCCGGCGCGCCGCGGCTGCCGCATCCGC
ACCCGCATCCACATCCACCCCGGACCTCGTCGCGGAGCTCGGCCGCGTCCTCTCCACGCG
CCGCTGGAACAAGGGCCGGGCCTACAAGCGCCTGGCGCCGTCCGTGACCCCGGCGCTCGT
CGCCGACCTCTTCCGCGCCCCCTCCGCGGCCCCCGACCCGGCCACGGCGCTCGCCTTCTT
CGACTGGGTCGCGCGCCGCCAGGGCTTCCGCCACACGGCCGCCTCCCACGCCGCGCTCCT
CCACCTCCTCTCGCGCTGGCGCTCCCCCGCGCGCTACGAGCAGCTCGTCTTCTCCATGTT
CGGCTGCTCGCGGAGCGCCGACGACATGCTCGCCTCCGCCGACGCCGTGCGGGCAATCTG
CCGAACGGGTGCCGCGCGCCACGCGCTCTCCCCGGCCTGCTACAACTTCGCGCTCAGGTC
GCTCGCGCGCTTCGACATGACGGAGGAGATGGAGAGGGTCTACTCACAGCTCGTCGGGGA
CGGGCTGCTGCCGGACACCAAGACGTACAACGCCATGATTAAGTCCTACTGCAAGGAGGG
GGACCTCCCCAAGGCTCACCGGTACTTCAAGCTGCTGCTGGAGTGTGGGCTGGAGCCGGA
CACCTTCACATGTAACGCGCTGGTGCTGGGTTACTGCCGGACGGGCAACCTGAGGCGGGC
CTGCTGGCTGTTGCTGATGATGCCGCTGGTCGGTTGCCGGAGAAATGAGTACTCCTACAC
CATTTTGATTCAGGGTCTGTGCGAGGCGCGGCGTGTAAGGGAGGCACTTGTGCTGTTTTT
GATGATGAGGGGTGATGGGTGCTCCCCGAATTCACACACATACAGATTCCTGATCGCCGG
CCTATGTAAGGAGGGCAGGATTGCTGACGCCAGGATGTTGCTTGATGAGATGTCTCGGGG
AGGTGTTGCTGCAAGTGTTATTACATATAATGCAATGATTGAAGGGTACCGTAAGGCAGG
AAGGATGCAGGATGCATTGGGGATTAAGGAGCTGATGGAAGGAAATGGGTGCCGCCCGGA
TGGTTGGACATACGGCACTTTGATTCATGGCCTCTGTGATGAGAAGATGGATGAAGCTGA
GCAATTGCTGGATAGTGCTGTTAAAGGAGGTTTTACACCTACGGTTGTCACATTCACTAA
CCTCATCGATGGGTACTGCAAAGCTGAAAGGATTGATGATGCCCTCAGGGTGAAAAATAA
TATGATGTTGAGTAAGTGTAAACTCGATATACATGTTTATGGGAAGTTGATCAATAGCCT
CATTAAGAAGGATATGTTAAAAGAGGCGAAGGAGTTGTTAACTGAAATTTCGGCAAATGG
TTTGGTTCCAAATGTGTTCACCTACACATCTGTAATTGATGGCTTTTGCAAGATCGGGAA
GGTTGATTTCGCACTAGAGGTCTGGAAAATGATGGAACGCGATGATTGCCAGCCAAACGT
ATGGACCTATAACTCTCTGATGTATGGGTTAATTCAGGATAAGAAACTTCACCACGCAAT
GGCACTGATAACTAAAATGCAAAAAGATGGAATAACTCCTAATGTTATCACCTACACCAC
TTTGGTTCAAGGCCAGTGCAATCAGCATGAATTTGATAATGCTTTCAGGTTATTTGAAAT
GATGGAGCAGAATGGTCTGACACCCGATGACCAATTATACACTGTCTTCACTGGTGCACT
GTGCAAAGCTGGAAGGCCTGAAGAAGCTTATTCATTTCTTGTTAGAAAAGGAGTAGCCCT
TACCAAGGTACTCTATACTACTTTAATTGATGGTTTCAGCAAGGCAGGCAATAGTGACAT
TGCCGCCACCCTCATAGATAGCATGATTGGTGAGGGCTGCACACCAGATTCATACACGTA
TAGTGTACTGCTGCATGCTTTATGCAAACAAAAGAAGCTGCAGGAAGCTTTGCCGATACT
GGATCAAATGACTCAAAGGGGAATAAAATGTACCATTTTTTCTTATACAACTCTAATCAA
TGAAATGCTCAGAGAAGGGAAGCATGACCATGCTAAAAGGATGTACGATGAAATGGTTTC
ATCAGGTCATAAGCCAAGTGCTACCACATATACTGTATTCATTAACTCATACTGTAAGGA
AGGTCGAATAGAGGAGGCTGAGAACTTAATTGTGGAAATGGAGAGAGACGGTGTTGCCCC
TGATGCAGTGACCTACAACACATTCATTGATGGCTGCGGGAATATGGGATATATTGATCG
CGCATTTCATACTCTGAAGCGCATGATGGATGCATCATGTGAGCCAGATTATGCGACGTA
CTGCATTCTGCTCAAGCATCTTCTAAAAGAGAATTTTAATGTCCGTTATGTAGACACCTC
CGGCATGTGGAACTTCATAGAGTTGGATACTGTTTGGCAGTTTCTTGAAAGGATGTCAAA
ACTTGGTTTGAATCCCACAATAACGACATACAGTTCTCTCATTGCAGGATTTTGCAAAGG
CAACCACATTGAAGAAGCATGTGTTCTTCTTGATTATATGCGCAGAAAAGATATACCACC
TAATGAAGAGATATACAGATTACTTGTCAAGTGCTGTTGTGATACCAAGTCCTTTGAGAA
GGCCTCGACATTTGTTCACGACATGATACAACACGGGTTTCAACCTCATCTTGAATCATA
CCAGCTTCTTATATTGGGGCTTTGTAACGAGGGAGAATTTGAGAAGGCTAAATCACTGTT
CTGTGACTTGCTTGAACTGGGCTATAATCACGATGAAGTTGCATGGAAAATTCTAAATGA
TGGTTTGCTCAAATGTGGTTATGTTGATATATGTTCCCAGATGCTGTCTACCATGGAGAA
TAAACACTGTTCCATTAGTTCTCAGACACATGCTATGGTGACCAATGGCTTGCATGAGGC
ATCTGGCAGTCTGGTTGGTGAATTCCGAGGAGAAGCTCTTTGAGTCAGCTTGACTGATAT
GTTCATGCTAATAGATGGTGTGTTTCATTGGCCACTCATTTCTTCTGTAACTTTCAGTCC
AATGGTAAGTGTCCATACAAGTCATGTGGAGTACTATATTTATCCAAACACGTTATTGCT
AAAACTTGGTTGACATAATTTTCTGCCTATCAGTGCACCTTTCTTTCCAGATTTTCTGTT
CAATGAAAATCGACATGTTATTTACAAATCACAAACTGTATCATCCTTCACCCCAGAAAC
TAACCATGTCACATGGCTCTATATGGTTTTGCATCTGCTGAAAGCTTCCCCTGCCACCCC
TTCATGGCATAATTGGTTTTCTTTAAACCATTAGAATATATTGGTTGTTAGACTTGTCAC
AGTTTAGCAAATATGATCAATTATTGATTGTGGTAGTCCAGTAAAGCAGATACTTTGTTG
AGAAAGTTGTACAGTATGAAACTTCGATCAAGGCATCAACTAACTAAAAGGTAATCCCTT
CCTTTTTTTTTTCCAGGAAGACATGTGCAATTTTGATATTAGCGAGGCACATGTGCAGGT
TGCGTGCAGCACCGTGTTGTACATAACTGACTTGAGATGAGCAACATCCAGTTAGGATGC
CGTAGATAGGCATAATTGATCAGCTAAATGGCAATACATGTTGCTCAAGCTGATCAGTTT
GCCAGAAACAGGATTATCGTACCAATTCCTATTCAAATCAAAGGCACTTTCTCTTCATCG
CAGTTAGGAGGTATGTACTGCATGGCTTTTCCATTCTATGTGATACCTTTGCTTTACTAT
GCATTTGGTTATCTAGAAAACCAAACAAGTTAGTCATACTGCTCTATTTTCTTATGTTGA
TGTTACAGAAGCATCATCCTTCCCTTCTATGCAGATAGTCAGTGTCAGGCTCACCCAAGC
CCAGGGCTTATGGAGTCTCATTGCTTGCTTTGCTTCAGGGGTACTCAATTATACCTGTCA
TTCTTTGATTGCCACATTGTGGTGGTATAGATGCAGTACAGTTCCTTTACATTGGAGAAG
TTTATTTTTGAATGATATAAAACAGTCTACCTTTATGACTCCTATTTATGTAGTGATCTT
ATCAGAGCATTTAGTGTGGTGCGAAATAAGGTATGAACTTAAAAAATATTGGATAGGTAC
AGACTTACTCCCTCCGTAAAGAAATATAAGAGCGTTTAGATCACTACTTTTCTAGTGATC
TAAACGCTCTTATATTTCTTTACAGATGGAGTACTTTGTAAAAAATAGATATGTAGACTT
GTTTACTACTACCTCTGTCCTCGAATGTATGCCACCGTGGGGTGCATAGAGTCAACCTTT
AGAAATCTTGACAACTAATATGTGCTAAAGTACAATTGATTCATCTTGCATAATTATTTT
ATGTGGTCCACACTTTATTGTTTTCTATAAAACATGTTATGTTCCGAAATTATAGTCATA
GCCCCGCATGGGAGGCTGTAAAAAACATCATACATTTGTGAATGGAGTAGGATTTCTTGT
TGTTTAGCTATATTTGATATACTTCCAAATCTTAGCCAACAAAGAGCAGTGGTTCGGATT
GCATTTTGCCACATTGAAACATCAGTCATCATCCGTGGTGAGACTTTGACAACATGAAAC
ACAATAGTTTGATGCGGTAACACGTTCTACAAGACAGGCACTTATTTGGACTCAAATACT
TTTCCCTCCCTCTCTCTCTCAGAGTGTTATGATCAGAGGCCCAGTTAGCCAAACTGGCCC
AGTTATCTTAATAATATTTGGGGCTTAGCCCAAGTTATCTTAATAATATTTGGGGCTTAG
CCCAAGTTATCTTAGTTATCTTAGAGTCCTAGTTATCTTAGAGTCAAAGTTATCG