morexGenes - Barley RNA-seq Database

Contig contig_2554333

Source Contig contig_2554333

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2554333 (1264 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_2554333

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_39693	1	525 bp	MLOC_39693.1	Available	Available	LOC_Os10g35644.1, FRAME:+1, EVALUE:1e-50, 13110.m03205 protein expressed protein

CDS Structure of MLOC_39693

Contig Sequence (1264 bp)

>contig_2554333 1264 assembly3_WGSMorex_rbca.fasta
ATAAACGGAACAAGTGGATGGGTCCGGCAATCAAAATGTCACTCCCGAGCTTCAGGTTAG
GTTTTTTTTAAACTAAACTAAAGAAGTCCCAACCAATGTCTGCACAAGGCGACGCACCAT
TTCCCTTCCATGGCTCAAAACCTGAACTGCACTTGTGCTCTGAATTTCAGCGGCCAGACA
GAGGATCATCCTGACCTTCTCAAGTACTCCTGCAAAGTAGAGTGCAGGTGGTTGCACTCC
CAAATTCTTAGCATATGCTTTGAGTTGCACATTGTTCTTTCAATTGCCTTTCTAACCATG
TGTGTGTGTGTTTCCATTGCATAGGGTGCGGCCGGTGAGTCCAGCAAAGGTCTGGAGCCC
TAAAACTGCAGAACCACGGGAGTGTTCTGACGGCAGGAGCAGCGGCGCCGGGTCTGAATC
AGATTCAGACGCGCAAAGGCAGAGCGTCATGGTCTTGCTATCGAGGCCCATCTTGGCTCT
GGAGTTCAGCTCCCTGCGGATGCACGTCGACGCGCCGAAGATTGTCGCTCCGCACCCCAA
GAAGAAGGAAGTCAGATACTCCAGCACCTGAATCTCATACCCAGACCATGGTTCAGAAGA
CAGTAGACTTTGGGCACTGTCTGTTGTTCTTTCATTTGTTCATAGGTTGCAAGTAAGATT
ATGCAGCTGGACACTGTGAAACCTGCTCGCTGAATTCATTCATAGTTTGGCATTGGTTGG
TTTATATGGTGAACAAGGGATACTTTTATCTGAACATTTGCAGTTGCTACAAAATATGCG
TGAATTAGTAGGTGTATATAGACAGGAAAAAACACGAAACGAAAATCAGCTGTTCCGGAA
TTAGATTAGCATATATGGTCTTCAAATTTAAACAGAGTGAGTTAGTCATGCATCCAATCC
AACGTAAACCCTAACAACTCTGACCTGAAACACAGCTACTCCTGAATCAGATTAACCCCA
TTTGGTTGTTGCTACGTTAAGATCAGTGGTCAAAGTAGGAGAGGAAGCTGTCGATGTCGT
CGAAACAGGCGACGTGAGGCAGACCCATGGTGATGCAGGGAAGGTCCGGCTCATCCATGA
ACCCCAGGGGGAGCGGAGACATGGGGCAGCAGCCCACGTCCATCTCCTCGCTGGTTTCAT
CAGCAGGCGGTGGCGGCGTCCGCGGTTCCATCTTCACCGGCCCGCTGACCGGGACCGCCG
CGATCGGCTCCCCGTTCGCGGTAGCGGCGGGCAGCGGCGGGGGGCGGGGGCGCCGCCGGC
GGGG