Contig Data
morexGenes
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Map Locations of contig_2554230 (1221 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_2554230

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_39661 3 947 bp MLOC_39661.1 Available Available LOC_Os01g48444.1, FRAME:-2, EVALUE:6e-77, 13101.m05028 protein OsIAA5 - Auxin-responsive Aux/IAA gene family member, expressed





CDS Structure of MLOC_39661






Contig Sequence (1221 bp)

>contig_2554230 1221 assembly3_WGSMorex_rbca.fasta
TGGTGCAAAACCCATAAAATGAATCCCTTCTTGAATGTGACTACTAGTGGAACCAACGAT
TATGAGGCAACATATGTCGTATATCTGCCAGATAGTAAATCAATCGTGATCATAGTATTT
CCATAATGAGCCTCAGACCAACTAACAACAAATGAACCTATGTAGTCCCATAATGAGCCT
CAGACCAACCTAACAACAAATGAACCAATGTAGTTCCATACTGAGACTCAGACCAACCTA
ACAACAGATGAACCTAAGTAGTTCCATCTGCGATTACAGATTAAAGCTCCACGAGATTTA
TATTTAAGACACTCAAAAGATATTCTGGGATTACTGCTTGAACTGGCGCCCACATCACCA
AATACTCGTATAACAATTAAAAGAACTTACTCCCATGGAAGATCACCGACAAGCATCCAG
TCAGCGTCCTTATCTTCGTATGTGAGGACGTACTCTTGATCTTGGAGGGAATCAGCATTG
GAACGACTAGTAAGCCTGTCCTTGGTTGATGGTTTGCGCAGCGCGCTTTGACCTTTAAAA
TCAGAGATGGATGCTATTACTCGCCAATAATTTTACCCTTCCAAGGTCCAGGCTTTAGCA
AGTAACTGTAAATCTAGAAACAAATGCTAGGTAATGCTACACTGGATCCGTTCAAAAGGC
TTTAGCACTAACCAGTGATGAAGCAGCTGAACATCTTCTGAAGTGCCATGGAGAGATCCT
CGTAGCTGGAATACGTCTTGAGGTCGACCTTCCTGAGGTAGGGGGCGCCATCCATGCTCA
CCTTGACATAGTGAGGCGCAGCGTCGTCTCCCCCCTTGGTCTTGGAGGCGCTCGCCGCCA
GCGTGTTCTTCCGGTAGTTGCGCACGGGCGGCCATCCCACAACCTGCGCCCTGGCAAGAG
AAGAAGGCCCCGTCGATCAGCGGCGGCCAACGACGCATCCAGTTTCAGAGGCGAGGCGAG
GCGAGGCGAATCGAATCTTACTTGGCGGCCGGCGGAGCCGCGGAGGGCGGCTTCTCCTCG
GCCTTGGCGGCAGCGGAGCACCCGCGGCGGGGGGAGGCGTCGGGGAACGCGCGCTTGGAG
GCGGCCTTGTGGGGGATGGGGACGGGGCCGAGGGTGAGCGCCGGGGCGACGTCCTCCGCG
GAGCCGTCGCGGTCGCGGTCGCGGTCGGGGGACTCCGATCCAGGGAGCGTGCTAACTTCG
TATAGCCTACCTTATACGCAG