morexGenes - Barley RNA-seq Database

Contig contig_2554165

Source Contig contig_2554165

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2554165 (1682 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_2554165

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_39647	2	1312 bp	MLOC_39647.1	Available	Available	LOC_Os09g20860.1, FRAME:+1, EVALUE:8e-53, 13109.m01990 protein calmodulin-binding protein, putative, expressed

CDS Structure of MLOC_39647

Contig Sequence (1682 bp)

>contig_2554165 1682 assembly3_WGSMorex_rbca.fasta
CTCCCGCCCCCCCCTCCCGCTGCTGCATCTCCCGGCCGCCGCGCTCCCCGACCCGCTCCG
CCTCGCGCCCGCCCTCCGCGCGCTTGCCTCGCGCATCGACCCGCTCCCTCTCGCGCTCTC
GTCGCTCGCATCGCCCCCGTCATCCCTTGATGCGGGGGTCCTCTTCCTTTCGCCCACGCC
GTCCGCGGCGCTGCTCGGCCTCCACGCGCAGCTCTGCGAGTTGCTGCGCAAGGACACGGG
GCTCGAGGTGCCCGACGGGTTCCGCCCCGACAACTGGGTCCCGCGGTGCGCCGTCGCCGT
CGATGTGCCGCGTGGCCGTATGGCCGAGGCTTTTTGCGTGCTCCGTGAGCTCAAGCTTCT
GCCTGTCTCCGGGTATGGTATGGACATTGCGCTTGTAGAAGTCGCGCCGGTGGTCAGAGA
GGTCGTGTCGTACCCGCTTGGTGGCAGCGGCGGTGTTGGAGCCGATTGAGAGGTAAGATA
TTGTTTCTCCTTAACTTCAGCTTAATCTTGTAGTGAAAATTTGAACCTCCATATGAGATT
GTGGTTGTTGTTATGATGATTTGCTTTTTGCTAAATATTTAGAGTTTTTTTTGGTGAATT
ATTAGCAACACTAGGAGGTGGATAGAATGATAATGTGTTGAACTGGGGCGGATTAAACAG
AAGGTGATCTGTCATTTTTGTATTTGCAAATGTAAACTAGCTAAACGTTTGATATAAATG
AATTACAAGGCACATAACATGGTATTATAGATATGCTAGTTGATTGTACGGATGAAATTG
CTCTTCTTCTTGTGACTTTAAAGTTTATTTGAATATCTCATGGCTAGTAACATTAGATAT
AGAAGTCGATGGTTTGGATATCGTTAATACAACTCTCCACTATCATAGGCTACATTTAGT
TGCACATTTGTTATGTCCTAAATTATTTGATTCAAGCAATCGATTAGGCAATTGTTCATA
TTTAATTTAACTCCATTGCTAAAAACTCAAAAAATTGCAGCGCTGTAATGTTAGTCAAAT
TAGGTTGATCAGACTACATAAGCACATTTAGAAATGTGAACTATTTAAGTCGGACTATTG
ATCCTTGTTAAAAAATGTAATGCATACTGGGAATATTCTCGAAGAATATAGAAAAATATG
ACTTTATATATTCTTATGAAGAGAAAGTAAACTAATTACTATGTACCATGGAAAATATGA
GAAGTATGGGTAAGTAGAGATTATCTATACCTAGATCGATATTTAACTACGAAATTCTAG
AGTTGTAAGTGTTATAATGCTTATACTGTGCCACATGCCCACGACCCAATGAGGTTGTAC
AAAATTACATATGGGTGCCACCATTCTACACATAACTATGACAAGTAAGAAATATATCAA
AAGGCAAGTAATTATGAAGAGGAGTGACCAACTATGAAGAGGATCGAATCCGGAATGATG
ATATACGAGATAGAGTTGGGGTAGCGCCGATTGAAGAGAAGCTTGTCNNNNNTCGTCTGA
GATGGTTTGGGCATATTTAGCGCAAGCCTCCAGAAGCCACGGTGCATAGCGGATGGCTAA
AGCGTGCTGATAATGTCAAAAGAGACCGGGGTAGACCAAACTTGACATGGGAAGAGTCTG
TAAAGAGAGATTTGAAGGATTGGAGTATCACCAAAGAACTAGCCATGGATAGGGGTGCGT
GG