morexGenes - Barley RNA-seq Database

Contig contig_2554146

Source Contig contig_2554146

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_2554146 (1549 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_2554146

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_39642	1	673 bp	AK249392.1	Not available	Available	None
MLOC_39641	1	192 bp	MLOC_39641.1	Available	Available	None

CDS Structure of MLOC_39642

CDS Structure of MLOC_39641

Contig Sequence (1549 bp)

>contig_2554146 1549 assembly3_WGSMorex_rbca.fasta
CACCCCTCTGGGCTGGCCCTGGTTCCCAAGCTATGTATCCCTTTTCCAAATGTTAGAAAG
GTTGTCTTACCTAGTTCTAGCATATAAGTTGGTTTGGACTTCTTTGACCCGCAAGGAACT
CTCCACAACTTAACTCACTTCAGCAGGCTGATAGATGGATGATATCTTGTCCGCACAGTG
GATTACCTTGCTGGGGACTGTGCCCGTTGAATACTGGATTTTCCACCAACTTAAGGCTTC
CGTTGGTTTGGAGGAATTTCATAGGATTTCTATAGGATAGGATTCTTGTAGGAATATTTC
CTTTAGAGCCCTTTGGTTCATAGGAATGGATTCCTACTCCTACACAGGATTGGTTCATAT
CCTTCACATTACAATGAAAAATAAACATGAGCCTAGACTCTGTTAGAGTTATAATATAAG
TCATGTACTCCTTTGTATTTATCCCGTTGTATAAGGGGTTTCCTGCATATGTTCCACACC
TGTACATGTATATATATATCGGCCTATGGCCTCATGGGAATACAAGTTGCTTATTCTTAA
CAGACTCAATGGAAAATAATCCTATGATGTGAACCAAATGACATCTCTTTTCCTATTTCT
ACTCATAGGATTTGAGATACATGTCTATCTTATTTCCTCCAAGTTTCCTATTCCTATGAT
AATCTTATCCTATGAACCAAAGGAGGCCTAAAATAGTGATAAATGACATTCATGACTGCA
CTTACTTTTTGCAAGCCTGTTTGCTAAATATAATGGGTGGCTGAATGGTTCAGTTAGATC
TTCTATTTTCTATATATTTTCTCATTTCCTGACCTCGACTATTTCTTCTTGCTGATATCC
GTTGGTGATTTATAGTGGTATATAAAGTTCTTGACAAGCTGTTGAGTTAATCCACATTCA
GTGCTATTTCTTATATTCTCTATACTTAGTTTTTACTGACTCAATCTAAATCACGCAATA
TAACTTTATTATAGGTGGTTGAGTTGAAAGCTTTCAACAAGTTTGAGAACACATCTGATG
CCCTTTCTGCTGCAACCCTCATTATTGATAGCAAACCTACCAAGGGTTTGCGCAAGTTCT
TGCAGAAGCATTGCGACGGTGAAACGTTAGCTGTTGCTGACTCTAAACTTGGAAATGCTA
TAAAAGAGAAACTGGTCAGTTAGTTTCATAGTTGCTTTGTTTCTGTACAATTACCAGTTC
CACTTACAAGTTTAATCTGCTTTCACAGAAAATTGACTGCGTTCACAACAGTGCTGTGAT
GGAGCTGATGAGAGGGCTGAGAAATCAGCTTAGTGAGCTTATATCTGGGTTGGGCACACA
GGACCTTGGTCCAATGAGCCTGGGATTGTCCCACAGCTTGTCTAGATATAAGCTGAAGTT
CAGTCCTGAAAAGGTGAGTCAGTACTGCTGGCGCTTTTCTCCCTTTTATCTGTCATGTTA
ATTTGTGCTTCATTTCTGGCTCCTGTGTCTAAGGGCATCTCCAACAGTTTGTTGGTTAGC
TTGTTGGTAAAATATGCCATGTCATCAGCCAACACCTTAACATACAACT