morexGenes - Barley RNA-seq Database

Contig contig_2553986

Source Contig contig_2553986

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_2553986 (1855 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_2553986

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_39595	1	450 bp	MLOC_39595.1	Available	Available	None
MLOC_39596	1	701 bp	MLOC_39596.1	Available	Available	LOC_Os04g46890.2, FRAME:-1, EVALUE:6e-13, 13104.m04734 protein pre-mRNA-processing factor 31, putative, expressed

CDS Structure of MLOC_39595

CDS Structure of MLOC_39596

Contig Sequence (1855 bp)

>contig_2553986 1855 assembly3_WGSMorex_rbca.fasta
GTTTTCTGCATGTTTTTCACTTTTTTCGGTTTTCCATACCAAACAAAGTACAATTGCCCT
AAAACTTTTTGGTGATTATTTCTGAATCAAAAGAAGATCAACGAGCATCCGAAGAAGGCT
GGAGGCCTTACGAGGGTCCCACAAGCCATCAGTGTGTGGCCTGGGGGGCTGATAGCTTGT
GCCTGCCTCGTGGTCCTCCCGGTTCTGTTATTTGATTTATAAATTTTCATCTACCCTAAA
AACACCAGGGGAGTCCCGAAACACTCACTACACCACAACGTTGATGTAAGGACAGAAAAA
ATGCAGGGACAAAACACTTTAAAGGGCAGATAAACTGTCGGGGTAGTGTTTCTTCCAGTT
GCCGGAGAATGGCTGTCGGGGATAACTTCTCCCGGCAGATTTTTTGCCGGCAATTTCTTT
GCCCTTGCTCGTGTATTTGCCAGCAGTCTATTTTCTCCCGGCAGATTGGTCAAAGCACAT
CAAACAACAATTACCGACAGTCCAACTGCCTTTAGAAGCTCATTTACCCGACAGTTTTTA
TGCCAACACATAGATTTCAATACCAAATAGTATTAGACATCCATGCACTATATCCAATCA
ATCAGTACATATAACATAATTTATACACATATTTCACTCAAAATAACTTAAGTCTCATCC
ATACACTTTAATCAAAGTAACATGTAGGTATTGCTTGACTTCATGACAAGCCAGTGCGCT
TTATGTGCTTACATTACAAACCCCGCCCCCATGGTACAACTGAGAATACAAGCTAACTCT
GTACAAGTGCATGAATCCGAAGAGATGTTGGGCTTTGTGTGCAGATTGAGACAAAGAAAC
AATCCTCTCTTTTAATCTCACACTCCCTTTTCATCTTCAGATTAGATTCCAACCTCAGTC
ACTCATGGCCTATTATTGATCCGAGAAAAAATGTGCCCGTCTCGGAGAAATAGGTGCTCT
GGGTTCCGCTTCCAAGAAGGTTCCCCTGGGCATGTGGGCTTGACAGCTCTATTTCCTGCA
AGCGAAAACAATGGCACATTAGAAACAAGGAGCAATTGATGTCATGGATCTTAGGTTAAC
CTTCTTATGTTTAAAAATAACAATAACCAACTGAAAAGGTCTATATAATGACATCCAAGA
TGCCACAACCTACTGATTAACATCTATCTATACACAAGGTGCTAAATGTATAAAAGGCTA
ACAACAACAAACCATCCAGCGCAAGATTATGCAAGGATGTACGGTAGCATAGGTAAAACC
ACCAACACATCAAACTGTATTGTTCATGATGACTTCACAGAAGCAAAATCTAGGAACTTT
ATAGTAATGCAACAAAAAAGGTAACAAAAAAATAGGTTAAACTACCTTTTTTGATCCCTC
AAAGATGAGCAGCACAAGTAGAAGCTAAGAAAATAATACAAGATAAAAAACTACATAGCG
ACCTAGTGTAGGCAGCACTGTAGCCATAATCCCCTGTTCCACAACTGGATCAGACAAATA
TCATGCATAAGGAACCAGGAGAAAATAAACTCACCTGAACTGGTGTAAAGGCCAAACAAA
ATATCATTCCAGCATCCGTGTCAAAACCAACTGGATTCAGTTTGCAAACTTCATCATATC
AGTCACCACATATCTACAGAACCAAGTTACCATAATTATGACAAGATACCATAATGTTTA
GGTGATGAAACAAGTTTCAGCCTGGAATGCAAATTAGTAAGTACTTCAAGTGTTATGACC
GGTACAACGTACCAATGGAGGAGGCCCAATGGGCAGGGTTAATTACAGGCTTAGCCCAAG
TTATCTTACCTATCTTAGANNNNNNNNTATATTAGAGTCCAAGTTAGAGTCCAAG