morexGenes - Barley RNA-seq Database

Contig contig_2553891
Source Contig contig_2553891
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2553891 (7401 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_2553891

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_39569	1	1682 bp	MLOC_39569.1	Available	Available	LOC_Os09g16870.1, FRAME:-2, EVALUE:5e-64, 13109.m01612 protein A3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with A3 subfamily conserved sequence
MLOC_39568	2	1363 bp	AK355393	Available	Available	None
CDS Structure of MLOC_39569

CDS Structure of MLOC_39568

Contig Sequence (7401 bp)

>contig_2553891 7401 assembly3_WGSMorex_rbca.fasta
ACTTCTACCGCGACCGCCGCCGCCACGTCATCACCACCCAGACCGAGCACAAGTGCGTCC
TCGACTCCTGCAGGTACCTCCAGCAAGAGGGCTTCGAGGTCACCTACCTCCCCGTTCGCC
CCGACGGCCTCATTGACGTCGCACAGCTCGCCGATGCCATCCGCCCCGACACCGGGCTCG
TCTCCGTCATGGCCGTCAACAACGAGATCGGCGTTGTCCAGCCGCTCGAGGAGATTGGCC
GCATCTGCCGCGAGAAGGGCGTGCCCTTCCACACAGACGCCGCGCAGGCTCTCGGGAAGA
TCCCAATTGATGTCAACCAGATGGGGATTGGACTCATGTCACTGTCCGCGCACAAGATTT
ATGGACCCAAGGGTGTGGGTGCGCTCTACCTGCGCCGCCGCCCTCGCATTCGTGTGGAGC
CACAGATGAGTGGAGGTGGCCAGGAGCGGGGTATCCGCAGTGGCACGGTGCCAACGCCCA
TTGTTGTAGGATTTGGTGCTGCCTGCGAAATTGCAGCCAAAGAGATGGACTACGATGAGA
GGCGAGTTAGCGCTCTGCAGCAGCGTCTGCTTGATGGCATCCGTTCCAAGGTTGATGATG
TTGTCATCAACGGTAGCATGGAGCACCGTTACGCGGGCAACCTAAACTTGTCATTTGCGT
ATGTCGAGGGCGAGAGCTTGCTGATGGGGCTGAAGGAGGTGGCTGTGTCAAGTGGCAGTG
CATGCACCAGTGCTAGTCTGGAGCCTTCCTATGTGCTCAGGGCGCTTGGTGTGGATGAGG
ACATGGCACACACCTCCATTCGCTTTGGCATGGGCCGCTTCACCACCGAGGAAGAGGTGG
ACAGAGCAACTGAGCTCACTGTCCATCAGGTGCTTAAGCTCCGTGAGATGAGTCCACTCT
ATGAGATGGCTAAGGCAGGCATCGACATCAAGAGCATCCAGTGGTCGCAGCACTGAGACT
CTTTCCGCAATGCTGTTCGCTTGACTGCTTTAGATGTGCTCGGATGGACACATACATAGG
TATATGGCCTTTAGCTGTTCTTGTTATATCCTGTTTTTCTTCATAAGGGAATATGTACTA
TACCTGCTAGTGGAAGTGTGTGACCTTGAACACTCTTTGAATCTGGTAGGCCACTACTGG
CTAAGTTTTGAGAGGGTTATCGTGTGTGCAATGTTTTCTCAGTAATAATCTACAGTCATT
TGTTTGTGACAGTTTGTTTTCTGTGTAAAGTTACCGCTGATTACTTTGAGAACCTGATTA
ATAGAACATAATATGCAACGATGGTTAAAATGCAAGGTAGTGTGCAGCAGAACGCGAGCT
CTTTGGTTGTAGATCCCTTCATTACCATATTATTTCTACAATGGGGTGTTGCAAATTTTG
TCCTCATAAAGAAATGGCAAGACAATGTCTTGCTTGAAGGATATCTCTAAATGGAAAAAA
AGTTATCTCCAAGCTGAACGTCTGAAATCAATATATTGTTCATGTGGTGTCTTAGTTTGT
TTGCTTCGCAACAAGTCACCTTGAACTTCAAGGGCATGCTTACTTTGCAGCCCGATTTTG
TAGAGCACCGTACACGAAAATGGCCTGATCATATGACAACATGACATTGTAACTGAACTG
CATTTCGCCAATAACATAAAGGTCACATGGTTTTCTGTGTTCTATAGGTTTGTCTATTTA
TTTGTCCCATTCATCATTTGTTCTGTATGCTTTTTATGCTTCTGTCTGATGTTTTGCATA
TCCATTTTAGTTCTTCGGCTTTCTTCTCACAACTCTTGTTTATTTGTTTACTTCGTATTG
AGTTTTAGAACTTTATAACTATCAGTCTCAGACTTACATTCTTTGTTCCTTCCAGTCTGG
TATTTTGCTTCTCACATACTTTTGCTATCCGCATCAAAGAATTTGATCATAGTAGTACTA
AGAGCATGGCTTCATACTAACTTACCATATGGATTCATCTAGACAAAATTCTGTGTGTAT
ATGTTGTTCTCCTGTTCCTTGGGTTTTATACTTGTGTACTGTCCAATTTTAATCATACTC
TTGGTTGTATTCTTCACCAATGTTTTGGTGCATTCAGTATCCTTATCTCTTTCTGCATCA
GCGTTTCTCTACCTTCGGCACATTTTTAGTGCCGTTTTGTGGTAGAAAATTCTAGGCTTA
GCAAGGTTGCCTATTTCTCATGTTCTCACATATTGTATCTGTTCTTTCGATGATCTACAT
CAAAATGCTATGTTCAGAGTATATAATCTTGACTTGGCCTGTTGGTCTCATAACTGGGTC
AGTGCTGCAATACTGTGATAGTTTTTCCGTAGTTATGGTTTATATGGGATGCATTCTTAA
AAAGAAAACTCATGCTTCAGTAATTTCTACTGTTTAGTACTGGGAAGAACTGCAGTTGCC
ATATACTCTGATTCGGTACAACTGTCTAATACAGCACATGGTTGGATTATTTCAGGCACG
TTTGGTAGTTGAAGATAGTGTTGGCATCCTAATCATAATGATAGATCTGCGAAGATGGTC
GATGAGTATTATGTAAGGAGGCATGTTTGGCAGCGCTCAAACAATCCGGGGAGAGTTAGA
TTTGTTCTCTAGCTGGATTGTATCAAAACACGAAATAATGATACCTGGTGTTGTACCTGT
CGAAAAACAATTTGAATTAGTTAAAGCGATGTGTATGTATTATGGCTGCAGATATGGTTT
TGGTATCATCTCAGTTTGTTATAAGAGACATGTACTCTTTGGTTTTGATATAATTCTGGT
AATATGTCAATTTGATATGTGAGACTATCTAGTGGGGCAATGTTCAACTTGTGTTGTGGT
TGGCTTCGGCCTTGAGTTGCCATATCATCTGATCCATTCCATTAACTGCATCTATTGTGC
ATAGAAGCCAGTAATGAAACTGTGCAGACCGAATGAAGTACCGGTGATTTCCGTCCAGAG
GAAGTAATGTACTGTTGATGTGGTAGGGGCAGTGATTGGGTGAGCTTCGATATTAACGTG
CTGTGGTTGATGTGGTATGGGCAGTGACTGGGTGAGCGTCGATATTAACGTGGTGTGGTT
GGTGTCTGGAGTATACAGAGAAAACGAAGGGAGTTTGGTATATAGAGAAAACGATGGGAA
TTTGGCAGATGCCCACCCCTATGACCCTTTTGAAATTGTTGCAGAAGTAGTACGGTTGTA
TGGAATTTCAGAGATCCCTTATACTTTTACTCTGTTTTTATGCTCAGTATGCAGGACGTA
GGAATTCTGTAACAGGGGTAATTTAGCATCAGCGTTCACATACTTGATATTTCTCTCTTT
GGGACCTTTATCTCATTGTTAAAACCACAGCTTCTGCTAGCCATAGACAAGCAGCGTTCA
TTCCCCTCCGTCGATGAGGATGTGCCGCAGTCCAATACATAAAGCTCCGAGTTGTTGGCA
GCAAGCTTGTCGCACCTTTGTCCTAACCAAGGACCAGATATGCTGGCAACTAATATGTAG
TTGCTGGGCTTGATCTATACACTGTCAAGGCAGGCCAACCAGGGCACAGCTTTGAAAGAT
CAGTGAATTCCAGTGGTAAGAAACACAAGATAAGTGAGAATATTGGAGGAAGGAGGACAC
TGGTATATGAATATGTGCTGTTCATCCCAAGCAGTCAATAGCTTGATGCCAGTTGCATCA
ACAGCCAAAGTAACTTCGATCAAGTACTGAAAGAAAGAACAGCCAAACTTAACCGCTGCC
GACTGTAAAAATAAGAGAATTATAAGCTGTTCCCACTTGCCCTCAATAATATAGTAGTGC
TAGGCGCCTGATGATTTTTTCACGATACTTGTCCGACGTGGATCAAATTGCTACTTCAAA
ATGAGAAACAGGATCACAGTGTCGTGTGCAGGTCGGACATAAAAGGTTGTGGCCAGAGAA
ATTCCGCCAATAATATGACAAATATAGCATAAATTTTCGTTTCAACTTGCCATTGTTGCT
TAAACTGAAAGGCTAGATAAAACAGGCACAGAAGAACAACATACAACTGGGATACAATTG
TTGGATGTCTTCTCTAGAAACTGAACGATAACCTGAAGCCATGATAGCTACACTAGGAGT
ACTCTACTGCAAACTAGTAGTACTAAGTACAAAGGATAGTCGACGAAGGGAACGCCAATG
TAACAGGCTTGGAGTAACCAAACATTCCTGTATCAACATTCCGTCATCATGCCTAATATA
TTCTGGTTTACTCTAGTTTTCTTGTTAGAACCCGGTTCCACGATGGTCGGTTTTCCATGC
GCTATCTTGAACCTATTCCGTACTTCAACCAAAAGAGTCGGAAAGTTCTGCATCAAACGG
AGGTACTCACTTGACGTTCCGACCATCTTGAAATTGTCACTATCAGTGAGGAAATCAAAG
CACCTGGCTTTGAGTTTGGGGCAGACATGGGCCTCCCCAAGTTCCAACATTGAAACCACA
GTGTCTGTCGTGATACCATTGCAACATAGCTTGTCCTCACAGATCTTCTTTAGCCCCTCC
ACCCCATACCTATCAGCGGCTACAAGCAGATGCTGACACTGTGCCATGATGGAAGAAACA
TCCACCTTGCCAGCATCAGGCAGCGAACCATGATATATGTAATGGAGCATAGTTCTGAAG
GTAGAGGCCTCCATGTCATGGATGGTGATAGATGCCATCTTGCTCTCAGCCATCAGGCCA
TAGAGCTCTGCTCTGAAGACTGGCGATCGGGTAGCGAGCACGAGGCGATGTGCGCTGAAG
CTCTCCCCGCCAACATCGAAGGAAACATCGGTGAGGTCTTGTTTATCCCACATGATGGCA
AGATCATGACCCAAACTCGGGAGCTCCTGCTCCAGCGACGAAGTTGGAGGTATCCAGTTG
ATGTCCACGGAGCACAACACCACAAAGTAGTCGTCGACCACACAGTTCGCCTTGACATCA
TCCCTCCTTGCTATCAGAGTGTTAAATCCGAGAGAGTTCTTTTTGGACCTCCCCATGGAA
GGCGCTGGTGAACCTGTCTTGTCGAGTAAAACCATGTGTATAGACATAGACAACTTGGCA
TCGCCCTCCAGAACGTGGTTATTCAGCATTGTGATGTCGACCATGATTTCGGGGCTCCAA
TGTCGAGGATGGTAAACAACGGCGCATCTGCATCCAGCAACGACGGTGTCCGATACAACC
CAGCCAGAACGGGGACCCTCGGGCGACGAGAATCTTACCCGTAAGCGGAAGATGCGACTG
TCTCTTGTCGGGAGTATTGCGCAATCTGACGGGGCCATGATGAACCCTCGAGGGTTTGAC
CTCGATTGAGGAGTTCTTAATGGGGGAACCGGCAGCGGCAGGCGGCAGCGATATGCAACT
CCAGGAAGCGGCGGCGACGGGCTAATATGTTGTCTCCCCTCTTTCGAGGAAACCAGGCAT
AGAACTCGCAGGCTGCCGCCGGCGGGGATGGTGGCGGAAGAAGGCCACCGGGGAGAGGAA
CTGAGAGCAGAGTGCGGCTAGGGTTCGGGGAAAACCCTATGCGCGGCTCACTGCGTCGTA
GTGTCGACGCTTTGTACGAGCGAAGGATGCAGTGGGCCGGCCCAATTGCTAACGAAGTTT
TTTTTTCCTATACAGTATTTTACTTATTTTGGAAGCCTTCTAGAAGGTTCCTGAACCGGG
TTTTTTTCTTATTGGTTTTCACTTCTGGGTTTTTGGGTTTTTTATTTTCCCTTTTCTTTC
TTTTTTCGCTTTTCATGTTTCCTTTTTTTCCTGTTTATTTTGTTCAAAAACTTCAAATAT
TGCACAGAATTTTAAAAAATTCTCTCCTTTTCAAAATTTGTTCACATTTTCTAAAAATAT
TGTTATTCCGAAAAATGTTCAGCAATTTAAAAAGATATTCTCATTTTCTAAATTTTGTTC
ACAATTTCAGAAAATGTTTGCATTTTCAAAGTTTTCTTCACAATTTCAAATATGTTCACA
TGTTAAAAACGTTATCATTTAGAAAAATTGTTCACAAATTTTATAAATTGTTCACATTTT
CATTTTTTCAGGAGTTTTGAAAAAATGTTCCAATTTTAAAAAAATGTTCACAAATTTCAA
AATACGTTCCTCTTTTCGAATTTTGTTCGGGAGTTTAATGTTCACCTTTCCAGCTTTGAT
TTTGAAATTTTAGAAAATGTTCCCGTTTTAAAAAATGTTCATCATTTTAAAAATGTTCTA
TTTCAAAAACAAATGTTCAGCATTTTCCAAAATATTCCTGTTTGCAAAATTATTTGGCAT
ATCATAAAATAAATCACAATTTTCAGGAAATGTTTTGATTTTTCACAAAAATATTTTCAT
ATGTGAACAAGGCTTTGAGTTCTTACAAATCACCTAGACTTGTCTGATCTAGTGGTCTGA
CGCAGTCACCTTAAATCCAAGGTTGTAAGCTCTAATCCTTGCGTCCTCTTTTTTTTACAT
CTTTTTAAAGTGATATGCGCGTGGTCTGTTGGCTATTGAGTTCTGGCCTGGAATTGGAAT
CCAGAACTATGTAACGCATACTTCCTCTTTTCAGATTAAAAAAGATCCACACATATTGCT
AGATTGACAAGAATATAAATTTTGTGCCTTGATTTTTTTTGTGTAAGATTGAAAATATAT
TATTTAAATTTTATAAGTGTCAAAAACGTCTTATATTTTGATACGAAGGAAGTAATATAT
AACTCATGATCAGATCTGGCCGAACAGACAGCGTGACACGACACAAGCATGGCCCGTAAG
GACACATTTAGCAATCGGGCCATGACGTGCCGGCCTGCGTGCTGCGTCTTCAGGCCCAAG
CACGACCTCTGTATATTTTTGATCATCTAGGTAAAATTGTGTCTACCGTAGCTTGTCACA
GAACTTGTTTAGGCTGACTAAGCTTTTAACGGTTTAAAAGTTATAAAAAAAATGAAATAA
ATAGTGTAGCATCTTTCTAATGTAACAAGATGATCCAGTGACGGGATTTTGAAAAAATGC
ATTTATGTGTTCTCGCCAAAAAAACAAGAATTTCAGCTTGCGCTGACATAAAATATATAC
TAACCTACTTGTTTTTTTTGTCTAGGACACATAAAGTTGTATTTCTTCAATCCTGTCCAT
GGATCATGTTATATTATAGGTGTGGTGTTTCAGTATTTTTTTCAGAATTTTTGAAAACTT
TGACACGGTAGAAAACCTTAACTAGTTCTGTGGCGAGCTATTGTAGAGAATCCTACTCCC
ATCTAGGTATATGTGACGCCCTCAGTTTAATCGTANNNNNNNNNNNNNNNNNNNNNNGTA
CGATCAAAACCAAGGACTCACGGAAAGATATCACANNNCAACTCTAGACACAAATAAATA
ATACAAGCTTCATATTACAANNNNNNNNNNNNGAGGGCTAGAATACAGAAGTTCGATATA
CACACGAGTCAGCGGAAGCAA