Contig Data
morexGenes
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Map Locations of contig_2553830 (4355 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_2553830

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_39554 3 2686 bp MLOC_39554.2 Available Available LOC_Os02g42870.1, FRAME:+2, EVALUE:4e-117, 13102.m04754 protein MYB family transcription factor, putative, expressed





CDS Structure of MLOC_39554






Contig Sequence (4355 bp)

>contig_2553830 4355 assembly3_WGSMorex_rbca.fasta
AGGGCGACGGGAGCTGCTGAGCTACTATCTCGAGCTCGGGGGTAAGCAGAGAGGAGGAGG
AGTAAGTAAGCACAGGGTTATTAAATGCAGGTGTTTTCTCAGGTTTTCTGCCGACAACAC
CGGATTAATAAGTGCTAAACGCAAGGGCCTGGACGCAAAATGACCAAACCTGACCCACCC
TGTCCACTTGGCAAGCTGTGAATGACTGTGGACTAAAAATGCACCACACTTGCAAGTTCT
AGGACCAAATAGGTACACTTTGCAAGTTCTAGAACCAAACCATCACATGCCATGCAAGTT
CTACGACTTGGGGGTGCTATTACTAAAAAAAAAAAAGTCACGGTGCATCATTTTGCGAGC
TGAGTCCCGATGGAATGCATGGCCGGACACGCAAACGAAACGACTGATGAACGGAGCTGC
TGGGCTGGATGTCACCCTGTCGCGCGCTGCGTGCCACCGTTTCCTCTTGTTCCGTGGAGA
GCGAGCAAAAACCCGTGGAAGGTCTCGTTGTTTGCGGCAGCGCAGGTGGAGATCTCCGGC
ATTAAAGTGCGCCACCCGGGGATCCTCCTCGGCCACAAACAAAACCTTCCTCGTCCCCCG
CGCCTCCCAAATCTTTCCCTTCCACTCCGGGACACCCCCCTCTCGTTTCACATCGCATTC
ATCGCCCCGTCCGCTCTATCCCCCAGGCCTCGACAGCTCCGTAGGTCTAGCCTCGTGCGC
GCGCTGGCGCCTCGATCCTCCAGCAACTACTACTTCTACTAGTACTACCAGTTGAGCTTT
CCTTGTAGTCCTTGTCCTCGGGAGCGCGAAGGAGATCATTACCCATGGGGAGGAGGGCGC
CGTGCTGCGACAAGAAGGGTCTCAAGAAGGGGCCGTGGACGCCGGAGGAGGACAAACAAC
TCGTCGACTTCATCCAGGCCAACGGCCATGGCAGCTGGCGCCTGCTCCCGAAGCTCGCAG
GTCTGTCTTCTCTCCCTCAGATCCATCAGTCCAACCATGACTTTTTACCACTCGCTAACT
CGGTGGTTCTTCCAAGTTCTACTCTTGTTGCAGTCATGGACTCACCTAGCAATGTTGTAT
TTTGATTTTGGATTACAGGTTTTGCATGCCGTGCAAATCGCTATTTGCTTGTTTTTCCCT
TTTTTGTGAAAGAAGGAGACGAGCACTAGTAATTAATTTGATTGAGCAAGCTTTTATGTA
GAACACCAAAAAAATTCATTGTTTCCAATTTTCCATGAGAGTGAGTTTTGATGTGTGAAC
TGCACTGGGCCGCGTTGCCTGCAGGGTTGAACCGGTGCGGCAAGAGTTGCCGGCTACGGT
GGACGAATTACCTGCGGCCGGACATCAAGCGCGGGCCCTTCACCGCCGAGGAGCAGAAGT
CCATCATCCAGCTCCACGCCATCGTCGGCAACAAGTAAGAGCCCGGACCTTGATTTACCT
CTTGGGCTAAGCACATCGCGGCAATAATGCAACCAACTGATCTAACTAACTATAGCTGCC
TGTAGCTCGCGCACTATCGCCATGAGCTCGGCGCAGCGTGCCACTGTGTTGTGCCTGAGC
ACACACACAGTGCTTGCATGGCCCCGTACGCGCGCTCAATGATGCAACTTGACTTGATGT
AGCATTTGGTGATGCATAGCTGGTGTAGTCGTAGTAGAACTGTAGAATTCATTCACAACG
AAGTACACATGCTACGTAGGGTCGTATACTCGTAGCAGTATGGTCCGGTGATAGTGTGGG
TAATGGAGTATCTTGATTGCAAGTGACGGCGGGCCTGTCCTGCTGGTCTCTTTGTTCTGC
GCAGGTGGTCCATGATCGCGGCGCAGCTGCCCGGCCGGACGGACAACGAGATCAAGAACT
ACTGGAACACGCACCTCAAGAAGCAGCTCCGCCGGATGGGCCTCGACGAGCCCCCGCCCG
GCCCGACCGCCGCGCGCCACATGGCGCAGTGGGAGACCGCGCGCCTGGAGGCCGAGGCGC
GCCTCTCGCTCCTCTCCTCCTCCGGCGCCGCGGCAACGGCCACCACCTCCGGCTCCGCGT
CCTCTTCATCGACCGCGGCCGCCGGCGCCCCGATGGCCGAACACGCGAAGCCCGCCGACG
TCTTCCTGCGCCTGTGGAACTCGGATATCGGGAGCTCTTTCCGCAAGGCGGCCGCGCCGG
TGTCCGTCAAGGAGGAGGAAGCGGTGCTGCCGGGGGCGGGGGACGACTCCTCGGCGGCGT
CCAACGAGATGGACGCGGCGGCGGCCGAGTACCAGATGTTCCTCGACTTCGCCGGCGAGG
AGCTGGGTCTGTTCCACGGCCGGCACGGCGGCTACTCGCTGTTCCCGCCGCTCGACGTGC
TCTCAGAGGCGTCCCTGGACACGGCGTTCTAGCAAGACTGCTGCTAGCGCGGGGGTCACG
TACGTACGCCTGTGGGCACGTACGTATGTTGTAGATATGCTTGCCTTTTGTGGCGTCCGA
TGGGCTTATGGCGCGCGTATGGGAGTAGTTAGTACGTGTGCCAAGCAAAGATGCACGAGA
GATTTTTGGTAGGAAGCTAGCTAGGGTTTCAGTTAGTAGGAGGTTTAACTGGGGCTAAGG
CTGGACATCATGGTGTATTACGGCTTGTGATTGGATTCTCTCCGGAGACGCTCTAATACA
TCGTATGATGTTCGATCTTAATTCACCTCGTCTTGGAGCCGTTCTAACCCTCAGGCTTTC
TTTTTTGATTAGAAAGGGGTTTTCCCCATGCCCCATTTTATTAGAATGAGGCATACCGCC
CAATCTCTGTCACATATAGTTCAACGGATATATCCCACAGGGGAAACTAAAAATGAAAAA
CTACAAATCCTGAGAGCAGAAGTTCTCTCATCAGCAAACATCACACATTCTACTTAAACT
TATTACAGTCCGAAGAGAAGTGGCTTCTTCATTGGGTCCTCCGTATCATCTCCACGCGAT
CCTCAAGACCTTTTCACGCATTTTGTCCACTAGATGAATGCACCTCATTAGCAAAGTGGC
CTGAGAATCGACAGAGAGAACCTTTCATTAATGCAGATGAACACTTAGCTTGACAAGGAC
GTAATTCATGCTTCTCCACGTGCGTCCCTGAAAGCAGAAATCATTTCTCCATTTCCAAAT
ACTTCTTTTGTTCCTAAATATAATTTTTTTTAAAGATTTCATTGAAAAACTACATGCTAA
ACAAAATAAATGAATCTATACTTTAAAGTATGTCTATGTACATCCGTATGTACTCTCCGA
TTGAAACCTCGAAAAAGACTTACTTAAAAACAGATGGAGTACTCCACAAGGAGACAGCAA
TTACCAAATTCAATACCAAGTAGTGCTACTTTTTTGAATGCCAGAAAGCATAGATATTAT
CAAAACTATCAATAATCTTAGTGCCAAAACATTCGGCAACAAAGGCTTTCTGAGTAAGCC
TTGGATGTTTCTGCAGCTACTATCTATCGCACACTATAAATTAGTGACAGGACGCAGAAG
TTTGTATACTCTTCAGACGCTGATAAGTCTCAAAGGATTTATCATGGGAAATAAAACGGT
TTTGTGGTAATTTATATACGCGAGAGATGGCAAGTTTTGTTGGTAAGCATGCCAATTCCG
TCCTCATTTTTTTTGTCAGAAATGGCAAGTTTTGTTGTTAAGCGTGACAATTTTGTCCTT
TTTTTGTCAGAAAATTATCGTGTTTGTTAACTAAATTTATCATCCTTGCTTTAACTAAAG
TTAACATTAGAAAGCGTTCAGTTTGCCATGGGCAAATCCCGAACGTTCAAGATTTATCAT
TCTTGTAATCTTTCTATTGAACACGGTAGTGAAAAAGCAAAAATACGAAGGCGGTCCTTT
GTCTATGGTCTCGAGATAAGACTTTCACAAGAGCGCGAGTCTAGTTTGATGGCTCTTCTT
TAGTTTTTTTTGTCTCGAAACAGGCTTTCGGCTCGCTTTATATATAAAGCAATAGTTCAG
TAGCCATACACCACATGTCAACAAATTGATAAAATAAAGGACACGCTGGGGCATCAACAC
AATCCAGATCAGGACAAGAGAAGAAACAAAAGATGACATCAAAGGGGCAACTAAGCATCA
TGAGAGGGAGAGGAGAGCCGTCGGGCGGTCACCATCAGCGCATCCAGGTAGCGATGAAGC
CGGTCGCGGTCTCGGGGCCTAACGAGCGGATGACAGTGCTGCAAGAAGGCAAGGAATTTA
AAGAACGAGTCAGATGCACGCCGCTGAAACACCCTCTCGATTACCATTTTGTTGCGAGTA
GTCAAAAGAGTCCACATGATAGCTGCGAATACCAGCCAAAACAGTCGGCGTTTACGGCCG
ACCTGGGTGGCCCGTACCTGCAGAAAATCTGCAAG