Contig Data
morexGenes
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Map Locations of contig_2553727 (6997 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_2553727

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_39511 4 2196 bp MLOC_39511.4 Available Available LOC_Os06g44060.2, FRAME:-3, EVALUE:0.0, 13106.m04625 protein phospholipase D. Active site motif family protein, expressed





CDS Structure of MLOC_39511






Contig Sequence (6997 bp)

>contig_2553727 6997 assembly3_WGSMorex_rbca.fasta
AGCTTTATCTTTTTGTAGGATTGGGGATATAGTCGACTTTTTTTACTTTTGAAAGAGGGA
TGGGGCAAGTTTAAAATGGTGTGAGATACGTTTGCTTTAGTACGTTTTTCTTTTGAGAAG
ATTATACGTGCTAGCTAATTTAGACACTATGTTTCTTTTTTCAAGGATATAACCTGTACC
TAGCTATTTTTTTTAAGAAACTCTGTTTTTCAGCAACAGAAACTCTGTTGATTTGATATG
GCGGGTCGGTCATGTGCTGCATCACGCAAGGCCCACCTGAGAGGCTGACATGAACGTGGC
TTCTATCTCTTCCACTGTGGAAGAATTTTGGGTCATATGAGTTTTTTTTCTCAGGATTGC
AAGGGTTAATCTACACCGTTATAATTTGGTCCCACCAGATTAACGGCTCGTAAAATCTAA
TTAACGCTGGAATTTCTAGGGAGTCTAGAATTAGTATAGGTATAAATGTCGAGTGTGGTG
GCTGCCTTCGTTGTAAAATCCATTGTCAGCATATGCTCTTCCATCTACTCCATTCCTCAT
CACCCACATTGTGGCCACAACATCAGCGATGTTGCGGCCCTCTAGAGAGTAACAACCGTA
GTTGTTACATTGAGTCAGGTATGCAACATGCAATTATTGTTGTCCTTTTGGTTCGCAGCA
GTTGTGCCTCGGCCTGACAAATGTCGGTATCCATGGGAGGCCTCACCTTGAGGGAGGCAT
GCCCACAAGGACACAAGTCGTGCGCGAGAGGCTGCTGGCGAAGCCAAGGAAATCAGTCGA
ATGAGCAGGACCTTTTCCCTAGTTTTTTTCTCTATTTCTCGCATGTTTTTAAAGCAGTTC
TTTATATATACAGGCTTGCTAAAAATCAGTCGACCGAGACTTATCCAATTCTCGGTCGAC
TTCACTGGCGTTGCATCTTTTGCATGGAGATTCACGCTAGACTGAACACCATCCAACGAT
CCTCGCGACATTGTGTTCCACGGTTTGCAAGATGTCTTCCTACCGGTTGTAGCATTCGTC
ATTGCTGGCTGTATCATGTTGCCTCACCCCCGTCACAACATCTGCCATAATCATTCAACA
CATCGTCTCATCGGTAGCCACAACAGTCGTTGCTTGCAGCACTCTCACAACATTTGTCGT
TGCCGTTTGCAGCATCCAGTCAATCGTGCCGCTCGAAGCAACACAACTACGCGGATGTCA
CTTAACCGAGACTTTGTTAAGTCTACATCGACCAAGGTCTAGCCACATCCTTCTTTATAT
GCATGTAAAATACTAGGCTACGACAGCCAAGGGAACACGGCCCGGCGATGTCTTGAATCC
AAACTGAAATCCTATTCGGACGCACCTCGTCGTGATCGTTCCTAGGAATAGCAGGACTAG
TGCTACCTTCTTGTGGCTGTAGCTGCTGCTGGTCGGAAGAGGAGGTTCAGCAGGCGTAGG
CGCTTCCCGCTTTGACTCCGGCAGGGTGGAGCTGAACGACCACGACAGCATCCGGTGCAG
CGCGGCAAAGGCGGCGCCATTCGCCGTGGAGAAGCCGACGGCGACCTCCTCCGGCAGAAT
TCTGCGCAGATCAACGGTTGCATTGAGCTGGTACATGGCACCGCCGATGACGAGATCGAC
GGCCAGTATCCTGGAGCCGTTGTGGTACTTCACGGTGGCTTCCATGACATGGGGCGACGC
GAGGTTCTTGCCAGCTGGCCATGCCATCGTCGTGTACGCGGATGCTGCCGTGGAGTTGAC
GGAGCTGACGTCGATGCCGGCATGGTTGAGGGAAGCCTCGAACTCGACCGCCACGATCCG
GCTCTCGCCTGTCCCGTCACCGCCAGCGAAGGCCGGGAGGAGGCCGAGGCCGGCGCCGGC
GCCGCTGCTGTCCGGTGCCACCGAGGGGAGATGCCCGAGGAAGAAGGCCATCCTATCGCC
GGTCTGCCGTGCCAGGATGTCCTTCTCCGAGGTGATCCGGAAGGAGAAGGCGGTGGCGAA
GCTAGCCATCTCGCCGGTGGCGCCGTTCCAGAGCGGCACTTTGTGTCCGTACGACGCCCA
GCTGTTTTTCGTCAGCTGCAGCGCCGGTGGGCTGACGAGTGCGTCACCGGCGACGACAAT
CGACGAACCGGCGCCGGGGTCGGAGAAGTCGAGGCTGAAGGAGAGCGAGAAGGCCCCGCG
CGGCGCATGGTAGAGGCATAGCAACGACGCCAGGACTAGGGCGGTGGTCGGACGACGGCG
AGAGGCCATGGCTTGGGCGTGGTGCCTGGGAGGGAGGAGCATCATGAAATAGGGAATGGG
GGAGTAGTTAGTCGTCAAGGTCAAAATTTAGAGGATAAAGTTAGTGCTTGATGCAGCACA
CGAAAGCAACTAGACAGCCAGCGGATTAATGGTGTTGTCGTTGAAAATTTCTATTTAAGG
CCATTAGATTACACATATCAAGTCACCATCCTGCTAAACAAGAGACGTGGGGAATTGCTT
CGGATCGCATGGAGATGATGCTGGAAGGGAGCAGGGGGGCTTACTAGTTTTATTTCTGTC
TGTAATAAAAGATCTATGCTTGCCTCTTGCTGTACTTGCTAAAACTGCACTCCCTGGTTC
GCCTAGATCTGTTTTAGGAAGTCTTTTGGTTAAGTTCGTCCTAGCTGGTTGATGAACATG
TAAGACTCTGTTGCTTCATTTTGAATAAAGATGGGGCAGGGGGGAAAACCCTTTTGGTTC
AAAAAAAAATCAAGTCACCATCACCAACCTTTCCCCCTTTGGTTCAAAAAAAAAAATCAA
GTCACCATCACCAACCTTCCCCCCTTTGGTTCAAAAAAAATCAAGTCACCATCACCAACC
TGTGGTTGGATGGTTAGAGGGACCGTGGTATTCCCAGCCCACCAGAGTTCAAGTGTACGC
GTACTATCATATAAGTAGAGTCTAGTGGTCGCGGTTGACTTGACTTTTTCCTTCTTCTTA
TCCTTTTTTTTATTTACTCAAGTTCTTTTTTCTTTTCATACCAAAACCCACAGTGGAGCA
AAGCAGTATTTCTTTTTTTGCAATATAAGAGGTGAAACAGATTCAAGTTCACATCCATTC
ATTCAGAAGACAGAAGCAACAAATGTGAAGTTCACATCCAACATATGTGAAGCTCACAGC
TAACAATACAACTAATACACCACTAGCAGGTCACAGCCACAATTTCCTATTGGATGACAG
TTACAAGGCATTACAATGTACTAACCAAACAAGACAACTATGAGTTACATGACTAATAAG
CAAATAAAATGAACAAGTCGATTTTTTTGTTAAACCGTTGCATTCATCAGGCCCGCAGCA
AGACAAGGCCAGATGTTCTTTCCTGACAACAGGTTGAGAAAAATTAGTGAACTGATCTGA
TCACCTGGATGCCTCCAGAGGCTTAACCGGCATGGTGTAGGGAGAATCCCAGTCCGCATC
GAAGACTTCTTGCAGCTGCGAGACGATGGAGGGATTGTACGTTCCAAAGCTCACTCCAGC
CGTCGTGTAGAAGTAATCCCAGATGAGGTTGCTGGTGCCGATGTTCGCCCTCACATCGCT
GACGGCATACTTGCCATGGTTCACCCGGGTGAAGCCGGGGTAACAGTTCCCCGTCGGGGC
GCCCTGAGACAGGGCGGGACCGGTCTCGTTGTACCCGGGAACCAAGTAGTACTTGACCTC
GACCTTGCCGCCACAGTGGTTGTATTTGGAGGATGCGCAGAGGATGTTTGAGTAAAGGAG
GCTCTTCAAGTACTTTTCGGTGCTCGGGATGAAGTGTGTCCAGTAGGCTACCAGCAGCCT
CACTGTTGCATTCTTGGAGAATATTACCTATCAAGGATCAGTTTATATTCAGTTAGTACA
TGAATTCAGAATTGGTAAGTAGAGATGAAGTAAACCGATTTTTTTTAAAGGCCACTCTGG
CAGCTTTACAAGAGCGATGTAGGATACTATTCTACAAAGTTTTGGCGTTCAGAGCCTTGT
TATTGAAGCTATGGCGCATTGCCAATTGGATAATACTGATTACGGTGCTCAGGTAGTCAT
GATAGTGCCAAAAGAATCAGTTGATCTACAAATTTGGTACGGTATGTTAAATGTCACCTT
GCAGAATAGGTATATTATATCCAAGTATCCCAATTTTACTGAAACTACAGGAGGCCCTTT
GTTGCCAGAATAATTGGCATAACAAATGCAACTTACCTCTGATATTGCTGACGATAAAGA
TGGCCAGAACACAGTTTGAGAAGCATATTGCGATTGTCCAAGCCAATCCATAGTACTTAT
CCTCACCATTCCCCCAGAATTCACAGATTTGATGGTGTCGACCCAACCTTGCTCGTCTGC
CTGGAACTTGTCAAATGACAGCTGCAAAACATGAACAAATTGAATCAGCATCAGAACATG
TGTTGCAACTTCTAGATTATTCCTTGGAAAAGTGATCCGCGTGTTTTAATTATACATGGC
ATGATAAAATGCCATGTGAACTGGAAATGGATCGTTAACGCTGAATGAATCATAGCACTT
GAAATAAATATTTTACAGACTTGCCAACTGTTGTAGCAGACACTCTCCTATTCTTCCTTA
AGGCAGACTATGTGAGGCAGCCAGGCAACCAAGAAAAAAAATTGAATATGGTATGCACAC
TAGATATTCAAGTGTGTGACTGTGTGCTAGAGGATAGGTTACTACAACACCAAGTGACTG
AAAGTTGTACTACGAGTTAGTGCTTATGATACTACTTCCGATATTCCATTGCTTGATACA
AAAAAAGAAAGATATTTCATTTGTCTTCAGAAAGAAAACAATATGTGACATTACCTCAGG
TGGAGCAAACGAGAGATAGCTCAAGTGGTGCTCTTTAGTGGATCTCTTGAGCCCAGGGGT
TTCAATTAAAACATCAAGCAGTTCAGGATTGGCAAGTGATGGATAGCCGTCGACATATGG
GACATCGACAGAAAGTGGCAGAGGTGACCTGATGCACATTATGAGCATATTTCTATTATT
CAACTCAGGGAGAGTATCAGAAGAGCTTGAGTACTTATGCCTGCTAATACAGTTTAGACA
AATTTATGAAACCATAACATGCCTTCAAGTAAATAATACTCCCTCCGTCCCAAAATTCAT
GTCCTAGTTTTGTCTAAATACAAATATATCTTGTCACGTTTTAGTGTTAGATACATCCGT
ATCTTGAGAAATCTAAGACAAGAATTTTAGGATGGAGGGAGTAGTAAATATTGTATCCAT
TTAACATCAAATAACAGTATGCACGTTACATTGAAATTGAACATCAAAGGAACACGACTA
AACGCTTTCAGCAATTTGACCAGAATTGTTAGCACAGGTACACGATATACAAAATACAAC
TGCCGGGAAATTATGGATAATATGCTGTCATGTAGGTGATAGTTTATTTTTGTATAGGTT
TTATACTGAGCAGTAACTTATTATCAATTACCGAGAAGGCTACAAACCTGCATCTTTGTT
CGGGGTGTAGGAAATGTGACCAGCATGGCACCTTTCTAAAAGTCTGCCACTTCTTATCCC
AGGCAATTTTTGTGTAAGTAGTTGAATTGAGTGTTGAAAGTGTCCAAAGATTTTGAAAAT
ACACTTCAACAGTTTTTGCTATCTGTGGACAACCAACGAAATAAATCCCCAGCTCCTTTA
CCTGCAATAAGAAGTCAAAATACTATCAAACAGATTCAACATAAAGAACTTGTTTTTTCG
ACACTTTTCTTTAGGACTACGATGTAAATGCAGTAACACTTTATTTAAGATAGTTTACTT
TCCAGTATACCTGGGTAAGGGACTTCCAATCATTGTTTGCAGATCCAATATACACATCCT
TTTTGTCGGATATCCAGACTTTTGCATGCAGAACGCCGGATCCCCACCAATCCTCAAAAA
GTACGGTTACATTCTGAACATTTGGCCTTCCTGCAGCGAGGTTAGCACTCTCTTGGTCGA
AATCAGGGGCGAACCCAGCGTGCTGCGCGATCCTGCAAAGGTGATTCAGTCGTTAAGAAA
ATATACACACATATCAAGTTTGCTTCTCATTGTTCATCAACTCCTTTTGCTTGATTGCTT
CGATAGCAGTTAACTGCACAGCGCCAAAACCTGCATTATCACTGGCATGCACCTATGTTG
TTATTCACTGATATAATCAGGACAACCAACTTCCTATGGCACAGAAATCACTGTAATGGT
AACAACCAACACTTGAAATGTTGACATCAACCCTTGCCTGATTTTGACTTTACGATCTGC
CGCTTTCTCAAGTGCCTTGTAAACCCGTAGCCCCTCGCCAGACCCGAACCTCGCCATGTC
ACTCTCAGAGAACCCGTACTCACCTGACTTTGGGTTCTTCGGGTGAGCTATGAACTGCCA
GTATTGCGCAAGGATATCAAGGCTCGCTGTCGTGTTCCCAGAGATCCACTGGAGCACGTC
CGCTGCGGATCAGCAGCAAGAACAAAAGTCAGCCAATCCTCTATTAAACTATCAATAAGG
CAAGTAACGCACACGAACAGATAAATTCCATTCTGTTCCTCCACAACTTTTTTCGAATTA
GATCGGACCAGGATCGGTTATAACGAAAACACACGCACACATGCTGTCAACAACACTCAT
GCATACTACTGCGCGCGCCGGGCTATCCTGAAACTAAGCAAACAACACCACTCCAGTTAG
GAATAACAGCCCAAATCCCCGTTGAGAATACTGACACCTGCAAACAGAAGTTGCAATCGG
CACGGCCAGTTGATCGGACAGGCAAACCCATCAATTGGAACGGGTGGCTTATTAATTCGG
AAAGCATTTGCATTCGGAAATGCCTTATCCTACATCCATGAGGAAATGGCGTGGTAATCG
AGGAACCGAAACCCCGGGATTCGAACCGCATGGATCCACGGCGAGAGCATCCGCGCTGAC
TCAGGGGAGGGCGGGAAGGGGAGAGCCCGGTGGGTACCTGTGGCGAGGACCCCCGGGACG
CGGCGGAGGTGGGGCATGTCGGTGGGGATGGACTGCA