Contig Data
morexGenes
Links



Map Locations of contig_2553707 (5339 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_2553707

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_39504 1 2612 bp AK353981 Available Available None





CDS Structure of MLOC_39504






Contig Sequence (5339 bp)

>contig_2553707 5339 assembly3_WGSMorex_rbca.fasta
TATGCCTATGGTGGTTACTATGGCGGTGCTGCTGCTCCACCTCCGGCAGATATGCCATCC
ACCTCCCGCGAGGAAGCCGCGCCACCACCGCCTCCATCTCCGCCAAGGGTGTCTACTTGG
GACTTCTTGAACCCATTTGAGACCTATGGGAGCTACTATGAGCAGCCAGCTGCAGCTCCA
ACGCCATACACTCCCAGCAGGAGTTCCAAAGATGTGCGCGAGGAGGAGGGCATCCCTGAT
TTGGAGGATGAGGACATGGAGGTAGTCAAGGAAGCTTATGGTGATGACAAGCACCCCAAT
GGGTACACTGGGAAAGGGAAGGCGGCAAAGGAGGAAGGTAGGAGCAGTACTGGGGATGAA
CTGCCCCGTGACTCCAAGTCGTCGGTGCCAAGTAGCAGTGGGAGCAGCTTGGATCATGAT
GTTCATGTAGTGGAGAAGAGTGTTGTCGGAGAACAGGTGCAGCGAACTGACGCACGCCAA
CATGTTGCTGGCCTGCCGCCCACAGGATCAGAGAAGACGTACGTTGATGACAATGAGGTG
GTGCTCGAGATCAAGGCTCAGTTCGAGCGTGCCTCCAGTTCAGCTGGTGAGGTGTCCAAG
ATGCTTGAGGTCGGCAAGATGCCTTACTACCAGAAAAGTTCCGGCTTCAAAGGTTGGTGA
ATTGTCTCACATCTGCTGTCAAATGGTTCTGTCTTGTTATTTTGCAGTTTCTAAACATGT
TTGCTAAGTTTAACCCAATTGTCAATCCAGTATCTGCGATGATGATTTGTGGGATACCGA
CAATGGAGGAGGAGTTCCTGCGGTTCGAAGAGGACAAAGCAATGGGATGTGGCAACCTTT
CCTCGACGCTGCAGAAACTCTACATGTGGGAAAGGAAGCTTCTTCAGGAAGTTAAGGTAT
ATAATTCTCTTTTCACATATTTGAATTTCTGAGGAACATTGTGAGTCCTGAGGCTACTTT
TTTTTGGCAATGTGATTCCCCATCCTAATCTAGAGTACAGAGTTCAAGTACAGCATGTGA
AAGTTTTGGATTTGTCCGTTGTCTATGGTACTGGCTGATTATAATTAGGAGTTCCCATCT
TATTTTGTAAGGGGTAGCACAATTTAGTTATTGTTATTGCGGCTAAAATTATGTATCATG
TAGTTAAATGCAACTTTTTAATTAATGAATAAGTATGCTATAGACAGGTCCACTTTAATA
CTCTTTTGTTCTTCAATGTATAAATAAATGGTTGGTTCTTTGATACTCATTGAAATGATG
TGGGAGTGGCCTCTGAAAAATGATTTTCTTTCTGTTCTATGGTTTATGGTATTTATGTTT
CAAAAGTTTGGCTGCATTTCTTCTAACCCTACGCTCTGTCATGCACACAATGCTTTGTTT
TGTGATACATATGGGTCAGTGTTTTACTTATCACTGCACACATTTATCCAATATTAGATT
CACTGGACTCAGTTTCTTCGGGTGCATTACAGGCTGAAGAGGAGGAAAGGCTCAAGTACG
ATAGGAAACGCCAGGACCTGCAAATATTAGATGAGAAAGGTGCAGAAGCTGAAAAGATCA
TAGCGACGGAAAAGGAAATAAGGAAGTTATCAACAAGGATAAGCATAGCTATTCAGGTTG
TGAACACTATCTCAGGCAAGATCAGTAAGCTAAGGGATGATGAGTTATGGCCACAAACAT
GTGAGCTCATTCAAGGGTATGCAACTCTTCCTTAAACAACAGTAACCTACACACTATAAT
GACACCCCTATCTGTTCCCTGCTTCTTTAACATGTCAGGATATCATATCTGGAATATCTC
TAGCTACATGTTTGGTGTTAATTTAAATATTTCACACCTGCAAATTAGTGGATTTGTAAA
TCATTTTTCTATATACTACCTTGCAATATTGTTAATGCGAGTTAGGTGATAGAGAGGCAC
ACAATTAACAGTGAGCAATGTGCAGTTAGAAAAAGTATGTTCACAGGGTTTCCTTGAGTA
ACCAAAATGCTTTTGTTGTGGCAGTCCTAGTAGTATATGTTTGTAAACTGTTTTTTCTCA
AACAGGACTGTCTTTTCTATCAGGGTTTAGTTTATTTTTTTCCTCCATACATCAGGATTC
GGTTGTTTTTTGACAGTTTTTTTGTCCATGAAGTGCATTGCAAGACATAGTTGACTGTTG
ACATCTGTGGTGGTGTGTTGTTCAGTTAGCACCTATGCATCTTTCTTTGCAGTTTTTATG
TACACACATGTTGGTCTGTGATATTGGAACTGATTGTACTAAATACTTTTATCCAGGTTG
ATGCGGATGTGGGACGTTATGTTAGAATGCCATCAGATCCAGCTGCATGCCATATCCCAA
GCTAAAAACATAGACTCCATGATAGATACTGCAAGGTTTGGTGAAGATCACATGACCTTG
ATCAAGAGTCTAGAGCTTCAGCTATTGGACTGGACTACCTGCTTTGCCGGATGGGTTGCC
GCTCAAAAGAACTATGTTAGTACGTTGAATGAGTGGCTGCTGAAAGGAGTTGATTATGTA
CCCGAGGAAACGGACGACGGCGTCCCTCCATTTTCTCCTGGACGGTTAGGTGCACCGCCC
ATCTTTGTGATATGTAATAATTGGGCAGCCGGTGTGGCGAGGATATCCGAGAAGGAAGTC
GTCAAGGCAATGCAGGCATTTGCGTCCAATGTCCTCCACCTCTGGGAGAAGCACAGGTCG
CAGCAAAGGCAGGGTATGATGGCGAATAAAGGTATGGACAGGGGCCTGAGAGTGATGGAG
AAGGATGAACAGGCAATGCGCAAGGCTCTGGAAGCAAAGAACAAGAAGCTTGTCCTGGTT
TCTGACCAGACAGGCGTGTCCTTGTCCGCACAGGTGTTACAAGGCGCAGGCCCCCAGGCC
GAAAACAGCAGTTTGCAGTCAAGTCTGCGGAATATTTTTGAAGCGATGGAGACCTTCACT
GCTGCCTCCGCAAATACTTACAAGGATCTCAATCTTCGCGCGGAGGAAGAGAAAGCTCGA
GTTGCCGAAGAGAGCAGTGGCAGTGTTCCGTAGCTCCCACGCTTATGTTTGCTGCTACAA
GAGGACACAAGCCTTTGTCAGTGCAAAGAAAACTGACCATGGTGATTCAGATCGGAACTG
TAGTGTGCATGGCTGTGGCTTGATTCTGGTGGCTGGCTTCCCGTTGATGCACCCGCCATC
CTTTAGCTCTCCACATTTTGGCTGTGGCGATGCCGAGCAGGTCTGAGGCAGGCTGAGACA
TGATGAGACCTCACCTTGTTGAATTGAGAATAGCCTTTGAGGGATTGGATGGCTGGCCGT
CTGCTCAGGCCATACCTGAGAAGTAGCAAGGAAACTGTAGTGTCAATCGAATCAAGAGGA
GGCACTCGCGGCTACTCATGCATCTCAGCAACACAGCAGCACCGGGGCAGCCAATCCCTG
ATCTAAGCAATGGGGTTTCCATACACCGCACAGAGTGAAGAAAGAAACCCGATCGTCATG
CTGCCAGGAGTTGGACGCTGCTGAAATGTGAGTTGTACAGGTTCCAGCGGTGGCGGTGCC
GAGGGGTAAGCGGAGCCGGTGATCGAACTGGGCAGCAGCTTTGCATAGCCAGAGCAGCGA
CTCTTTGAGTAGAGCAGTATAGGGTGGTACTTGACCTAGAGGCCGATCGATCAACCATAG
GATATAGTAGTAGATGATATTTTATGGCTGCTAACCGCCCCTCTGGCCTTCGGTCACCTG
AATTTTTTGGTTGTTCTTGTTGGTTGTGTTTATTCGTATAGAAGAATGTACTATGATTCA
TTGGTGCCGTTGGTTGGTTTGGTTGTCTTGTGTACAGCTGCTGGCTAATTTAGTAGCTTA
ACTGAAACCTGTTCCTTTTTGGTGTGTGATATTTTTGGCCGAGCTCCGTTGGGTGTGCCG
TCTAATATGCATTTGGATTTTGCTGCAGCTGATCTGTGTAGAAGAACATGCATTTGGATT
TTGCTGCAGCTGATCTGTGTAGAAGAACAGGTGCAGCACCTGCAGCACAGCAACTCCACT
TTGTTGCTGGGGAAGAATATCAGGTACCACCACATGTTAGGTGCTACCGTTCTTCAAAAA
ACTAACTTAGACGCGCTCTTCAAAAAAATTCCAAAAAGGAATTGTGAGTGTTCACAAGAT
GTGTGTCAGTACCTCAAAACTGTAAAAGTTTCAAACCAAAATTCGAAATACACAAGAAAG
AACAAACAAGACAAATTCAGCGTGAATAGTCTACACACAAGAACAAAAGTCAAAATACCA
CGGTTCGCTTGCGTGTTTTTGAGCGCTGGATCAAAGATGGATGGCTGAGATCAGGCTGGA
GCAGCTGAGTGTTGACCTAGAGAAGACGATGGCGGGATCTCGTTGGTTCTGGGACAGGGA
CGGCGGCGGTCAAGGTGGATCAAATCATTCCGGCGGCCGGGACCGGACCTGACCTGACCT
AACCTAACCAACCCATGGAACATTCTCCTCCCTCCGTTCATCACGTGACCACGAATCATT
CCCGGCCGCGTAGAATACTCCTCTCGTTAAAGCAGACGGCACTCCTTCCCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTGCAGAGAAAAAACAACAAATGCATGCGACGCAAAGGCTG
CAATCCAAGAACAAATCCTCCATTAAAGGCCGGGCCTGGCCACAAATTGACTTTGACCGT
CCGTCCGTTCTGGCCGGCCGTTACACGTCGTCGAATTACCGCCGGATGGCCATGGCCAGC
CCTGCTGTAGCTGGATCGGTCAGTTGGTTAAATCCTTTTTTTCTTTTCGGTACTAGTTAG
CATGCACGTGCAACGCATGACTAACCGAATAATTTATAAATTCCTTTTAATATTAAAATT
TTAGTATATATATATAACTGCAAAAATATTGAAACACACACAATATACTAAATCGTGCTG
CAAAACAGGAATCTCACAAAGAATGACGGACAGGCCGTAATGATTGAAGAGGCATCAATC
ACCAGTGACGCAATTTGCTCTGCCTTACGGCTCACGCTCGCAGCTAGCCAAATGCTCTTC
CCACTAATAGCGTCTCTTAACAAAAGCTCTTCCAACCTAAACAAAAAATACCCCGCAAAG
AAAAAAAAACCTAAACAAAAAATGATCTTTTCAAAAAAGAGCAGCCTGTCATCTCATTCT
CATGTGCAGGAGATATAAAACTGACGCACAAGCTAAAAAATAAGCAAATTACACACATCT
TTTACATTCAAGGTCTGCGCCGCAGTTCCGGTGGCGGCGTGGAGTTCATCATGGCCGCGC
CACCGCCGGCGAAGCGGCCCCCTTTTTACAATACGTAATAACTTCGTATTTCATTCATT