morexGenes - Barley RNA-seq Database

Contig contig_2553308

Source Contig contig_2553308

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2553308 (1717 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_2553308

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_39415	1	1092 bp	MLOC_39415.1	Available	Available	LOC_Os08g42410.2, FRAME:-3, EVALUE:3e-53, 13108.m04566 protein transketolase, putative, expressed
MLOC_39414	1	726 bp	None	Available	Available	None

CDS Structure of MLOC_39415

CDS Structure of MLOC_39414

Contig Sequence (1717 bp)

>contig_2553308 1717 assembly3_WGSMorex_rbca.fasta
CTATACTATTAACCATGCTCTAAAAATAAAAGCAGCATTATCCCCTACTTCCAGAAAATA
TTGCACGGTAGCCAATCAATAATACTGGCTACAAATAAAGGTTGCGCAGTAGCCAACCAA
TGATACTGGCAATAGATAAAGGTTCCGCGGTAGATGGATGAAGGCAAGAAACTAAATAAC
ATGGTAAAACTGTGCTATTTCCAGTACCACTCATAAAAAATGCATCCATTAGACAGACTT
TCTCAATAAGATACATAAAAAAATGGGACCCCCAAGTTTGGTATCAATGTAGAAGAAGCA
GAAAGCACAGACCTGGGGAACTGCCAATCTTTCAAGGTTTGCCGCATAGGGCATAGGTAC
ATCAGCTCCGGCAATCCTCTCAACTGGTGCGTCAAGATACTCAAAGCTGTCCTCCACAAC
GGACATGCTGCAATGAAGATGCATCTGAGAACCCGACACCCAAGCATAGGGGAGAGAGAG
AGAGAGAGAGAGAGACGAACCATATTTCAGCACCAACACCATGTTGTGGAAAGCCTTCTT
CAACGGTTACCAATCTATTGGTTTTCCTAACGGATGCATTGATAGCAGCTCTATCCAATG
GTCTAATTGACCGAAGGTTGATCACCTGTTGATATTAGTGGATAATAAGAAATACTGATG
AATGTAGTTAAAAAGGAACATTAGTCACATAACTGTACTACATAATATGTTTTGCTCAAA
GTAACTACCTCAGCACTGATTCCCTCCTTGGACAGTATCTCTGCAGCCTGAAAATTGACT
GAGCATGAGAATGTAACCAGAACAATAGGTCAAGTATTTTATGTACAGTGGGGGGAAAAC
ATTTATGCTAATTAAACAAATGCACTCCTGCAAGTAAATCATCTCAAACAGAATCAATTT
CTCAAAATGTCATCTCACTATGGTTGGTCCAATTTTGAACTTCTCTAAATTTGGACGTTG
AGACCATTATTAAAAGGGGGTGGCCTATAGAATTCAACACACGTTTGATTAGCTCTTGGC
TGGGTGTTATATGTGACCATATACATGGGCTGTACGTGTACTATACTATGTATTCTAACA
GCAGGACCTTCTTTTTCAGCACCATGACACCAGGCCCTGTGGCATAGCACCTTATCATCA
AGATCACTGATGCCCTGAGTTCCATGTCAGTCTATGCTCTAACGTGGAATATGGTGAAGC
AGAATCAGCAGGAGGTTAATGCTGAAGAACCCAGGGTTGACCTGTATGGCCTTAACAGCA
CCATTGTTGGCACTGAGCCAGCAGTTATGACTATGCAATCCACTTAATTAATGCACTGAT
TCATGTCAAGACAGATTATGATGATCTAATGAATGCTACTTCATGTGAAGGTTGGTCTTG
TTTCTTTTATGCGATTCTGTGGCATGAATGTGTTAATTTCGAATCATGACATATCGAAGG
ATTCTCAGAACTGAAGATCATGAAGATTGAATCCTGAATTGTTTTGACAGCATAGGCAAG
ATCATCTTGAATATAATTCTATGATTCACTTCATGCAGACATAAGAGACGTGTAGGCCGT
GAATGTCACGAATGCATTCAGTAGTCACTTACTTCCTCCGTTCCTAAATATAAGTCTTTT
AAGAGATTCCACTAGGGACTACATACGGATGTATAGACATACTTTAGAGTGTANNNNCAC
TCATTTTGTTTCGTATGTAGCCCGTAGTGGAATCTCT