morexGenes - Barley RNA-seq Database

Contig contig_2552946

Source Contig contig_2552946

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2552946 (1895 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_2552946

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_39295	1	618 bp	MLOC_39295.1	Available	Available	LOC_Os06g41710.1, FRAME:+2, EVALUE:2e-57, 13106.m04355 protein CW-type Zinc Finger, putative, expressed
MLOC_39296	1	249 bp	MLOC_39296.1	Available	Available	None

CDS Structure of MLOC_39295

CDS Structure of MLOC_39296

Contig Sequence (1895 bp)

>contig_2552946 1895 assembly3_WGSMorex_rbca.fasta
AAAAAAAAAAAACTAGCACTAGGACACAACACGTACCAGCCTAACCTTGTACTCTAACTA
ACTCTTCTCACGTGGAGAATAGATTAGGGCTAACTTAATACAAACTGAACAGAACGTGTG
CTAACACATAAACCTATTTGTATTAGAGGCAAGATTATTGCCAACAGTTTGCACTCTTTT
GTCATGCATTTTGTATTTGTTGTAACATTGATTTTTGTGTTCTCTTCCCAGTCTTACAAA
CGAGTTGGAGGGCAACAGTACAATGCTGACGCAGGGCGTGGAATAATAGGAGTTGCAGAT
GTTACTGACCTCATTGTAGGATTTATTCTTCATGTTCTTTGCTCCTCTATTTTCCTATTT
CTTTGCCCTTGTGTCCCCGGCATAAACTTCTTGATGTATTTTTCAGGATAACGAAGATGG
TAGTACTTGGGTTCTTAACAGCAAGCAAGGGTTTCAGGATTGTGAAATGTATGTCAAACT
GGAGGAGTGGCTCGGGAGAAAAGCAGATCAATACTGGGATAGAAATTTTGACAAGCTTGA
ATTGGTATGGATGTATGATTTAATTTACATTGGAAAATAGCTTACACATCTTGTCCTGAA
ATGCATTATGAGATCTCTTTTGCATGGAAAAAGGACAAGAACGATAATATTGGGAGATAA
CTCTGTTTTCATGCATTCATTTGAAAATTCCAATGAAAGTATTAACCATGATGAGGTGGT
ATGGTAACATGGTGGACAGTATGAGTTACCCATTCATGCCATCATCAATAACACTTTATG
TTACTATCCATTGAAAACCTACCAGGTCTTCTGTAAATACTGTAAAATTGACATACAAAT
ATAGATGTGATATGCACTTCCCTTTTTCTGCATGAAATACATGCATACAAATCTATCAGT
TCTTCTGAAAATACGTCTACTTACATGTATGTAATCATGCTATCAGAGGTTTATTCTCAT
CGGGGATGGGGGTTGCATTTCTATCCTCTCAGGACCTAAATGTTTATCTTACAGAAGTAA
TAAGTTATCATTTTACCTTCTGCACTGTTCCATATTATTCGAAAGGATTATTCACTCTAG
TTAACTCTCTTCATATAGAGAGAAGACTCTGAGCATATCGAGGCTGTTGATGACTGGGTT
CAGTGCAACAGCTGTCGTAAATGGAGAGTGCTGAGCGTGGGCTTTGATAAAGACTGTCTA
CCCAGTGAATGGTTTGTATGTTTCCAGCTTGCAATTAACATGTCATTGCTACCGCATCTT
GGCTATCGTGACCAGGGTTTTAAGTTCTTAACTTGAATGATTGCCCTGGCCATCCAACAG
CCAGTAAACCGGCCGCAACTTTACAAATCGTGATGCAAGCTCAGTTATATGAAAAATAAA
TATGAATCCTGTAGCATTTTAATTTCAAATAACTTATAAATATGGAGTTTGATGCATGAA
TTTTGTTACTACAAAGTGGTGTACTCACCCATAGCTACAGTATTCCTGGTACCTAAAGGG
ATTTCCTGTCCCAGCAGTAATAACAGCTACTCCCTCCGTAAAGAGATATAAGAGCATTTT
GATTACTACTTTAGTGATCTAAGCGCTCTTATATTTCTTTACAGAGGAAGTACTTACTGC
TGGAATTTGGAAAGTTGACTCTGAACAACGCCAGGATTACCTTACAAGTTTACTGTCCTA
CAGCGATGCTGATTTTTCAGTTTATGGAATCTTGCTGACTTTTAAGTTTACTGGACGATC
ATTCATGTTATTACCATCAAATTTAGTTTCGTTACCCAAATATTTTTCACTGGTAAATCT
TTTCATTGTTAAATTGAGTATTTTTTTAAGTAGCCATATATTACCAAAAGTTACTGGGTG
CGTCCGATGGGAGATGGTAGCTCAGGTTATCTTCA