morexGenes - Barley RNA-seq Database

Contig contig_2552923

Source Contig contig_2552923

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2552923 (2589 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_2552923

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_39291	1	1087 bp	MLOC_39291.1	Available	Available	LOC_Os02g13330.1, FRAME:-1, EVALUE:4e-88, 13102.m01479 protein bet v I allergen family protein, putative

CDS Structure of MLOC_39291

Contig Sequence (2589 bp)

>contig_2552923 2589 assembly3_WGSMorex_rbca.fasta
CCCCACCCCCCACAAAAAAAGTAGAGCTAAATAGAGATAGAGACTTGATTCACTCATATG
TATGTCGATAAGCTATTAAAAACAGTCTTTACACACCCCGGTCAATGGTATATTCATGAG
ATATTACATTGGGATCCGTGTATTTCTTTTCTTATATGTTATGTTACTTGATCAAGACTT
GGTTCAATCGACTGAGACCTAGCCATATCCAGTAGAAAAATGTTGCAGACCACCTTGATT
TATTGTATATGTTCTGATAAAAGAGAATATATGTCACGAATATTCAGTAAAACTGTCATG
TTGAACATAAATGAAAGTAAAGAGGATAAAGCAAAGACACAAAGTCTTCGAATTTAGGTG
AGCCTGAATTCTTTTAGCAACTAACTCCAACTTGCAGTAGGGTTGCTCTTTCTTGTGACC
TTGGCAACTAACACCCTTTGCTTTTTTAAATGCCAAACCAGAAGCGCTATCTTAAAAGTA
TGAGTACCAACTACCCAATATTGGAGAGAGATTGGCACAAACAAAAAAGAGTGATAACAT
GATGACATTGCAAGATAACGATGGAATATACATACAAAAAGCGAAAACGGAAAATAACAC
CAACTTGCATCCTCTTTCGATGTCATCACCCATCAGAACCTCAATAACATTAAATTCTCT
CTTTTTTGGCGCAGAAAAGAAAACAGAAAAGCATCACAATGCATGAATTGCATGCAACCG
GGACCTGGCATGGAGAAACCAAGAACGATCAATCAATGAATCACCGATGATCAGCTTTGC
CCATCCAACGGCGGTGGGGAGGAGGTGGTGGTGGCGATGGCGGCGAGTTTCTGGAGGTTG
AGCTTGACCACGGTGTCGGTGAACATGCGGGTGTCCTCCTCGGTGTTGCCCTCTGGTACA
TCGACGACGTAGGACTCGACGACGACGCAGTAGGACGGCCCGGAAGGCTGGTCCGTGAAC
TCGGTGACGGAGGTGACCGAGCGGTAGTTGCGGAGGCGGTGCTCGCCGCCGACGACGCAG
AAGCTGAGGATGTGTCGGTCGTCATCGAGGATCTCGAGGCGCTCGGTGCTGGTGGAGGCC
GGGAGGCCAGAGACGACAGTGACCTCGCGGACGCTGCCCACGGTGGCGCCGTCGCCGGCG
GCGAGAGCGCAGGACTTGATGAAGTGCTTGTAGCGCTGCGGATTGGCGAAGCCGCGCACG
ATGTCCCACACGGCGGCGAGCGGCGCCTGCACGCGCTGCGTGACCAGGGACGTGCACGTC
CCGCTGGCGCGCCCAGGAAATGTGTGGTGCTCCTCCACCACGCCCTCCAGCTCTCTCCGC
TCCGGCTCCGTCAACCCCTGACGCAGCGCGCTCTCCATGTGGTGCTCCATGCTCTCCCCT
TTTCTCTCTCTCTCTTTTCTTTCTCTGGCTAGTGTGCAATTAACTAAGAGCAGGCCTACT
TGTGTCCGTTGGGGTTAATGTAGTATTTGCTGATTGGAGGCGTCTCACCTTTTATGGTTG
GCCTCGAGCGTTGTTGCTGGCTTGATGATTTCTTTGTTTTCCATTTTTGAGCTCCTATTC
GCCCTCCGAGAAATGTTATTTCTAAACTGAAAAACAAATGCGCAGCTACATATTCCTTTC
CTAAGAGTATACACTTTTAATTTAAGGGATAATTGTATTTTTGCCCCTCTAGTTGGGTCA
CACTCGACGGGTTTATCCCTAGTTTCAGAAAACACTTGTTCCCGTTCAGACCACTTAGCT
TCGCGTATGCTTTTGCCCTTTGATCGTTTGACTCTTACTTTGAAAAATTCATAAAATATT
CACATTAACTCAGAAAAAATCAAATAAGATATCAAAATGTTAACAAAACATCACCTATAT
GTGCATGCCATTTGCATTCTTAACAAAATGTTGGAAAGTCTCCATTCTTGACTTAAAACA
AAAATCAAATGGGGTCTTTCCAACATTTTTGTTGTGAATGTGAATGACATGCACATATAG
GCTATGTTTCTGTCGATATTTTGATATTTTATTTGAATTTTTCTGAGTTAGTATGAATCT
TTTATGTAGTTTTTAAAATTATGATCAAACGGTTGAAGGACAAAAGCATAAGAGAAGCAA
GTGATTTGGACAGAAACAAGGATACCAAATTAATTATGCCTTTATTTAATATGTACTCCT
TCCGTAAAGAAATGAAAAAACGTTTAGATCGTTACTTTATATATTTTTATGATGAGGGAT
TTGGTTACAACCATTGGATTTCACTATTCATCATGGAATAAATGGTTCTTTTACATAGAA
AATGCTTATATGAGGTGGCATCTTTCAAAATATGCGTATTTTTCAGTAGCGGTGAGCTAA
TAAATTTTCCAGGCTTACATCATGTTGGTCAAGGCAATCAATTCAATCAAATGGCTCAAC
ATCATTGCCGTGATAAGGGCAATGCTAATGTGAGTCATCTACTCCCTCCGTTCCTAAATA
TAAGTATTTTAAAAGATTTCACTAGATGACTACTACTTCCTCCGTTTTTAAATATANNNN
NNNNNNNATATTTCACTAGGTGTCTATATACGGAGCAAAATGAGTGAATCTACGTAATAA
CTTCGTATA