morexGenes - Barley RNA-seq Database

Contig contig_2552675

Source Contig contig_2552675

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_2552675 (2651 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_2552675

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_39227	1	2334 bp	MLOC_39227.1	Available	Available	None

CDS Structure of MLOC_39227

Contig Sequence (2651 bp)

>contig_2552675 2651 assembly3_WGSMorex_rbca.fasta
TCATATATCCATGTCACACTAACTGAGGAAGGCAAACCTACAAACAATATCCAACAGATC
CTGTAATAATATGGTTCATGCTACAAACTACTATAGTTGTTACTATTCATGCTTTGACTG
ATATAGATTTTTATCACATGTTACATATTTGTCCCAACAATAAAAATTTCATTGCCTATG
TATGAAATCTACCTATCATTTTATTAATTCAAATTATTTTCTTCTTTGAGATTTCCATGT
TACTCCGATAATCTGCAACAAATTTCCGCAGCAACGCGCGGGGCATCAACTAGTTCAACA
ATGCCCATCTCCAACCACTCAACAGGCAACATACATACCTTTCAAAGAAGATACCTGCAT
TTCTCTGAAGTTGTATGATTTTAGGGGTGCAAATTTAGCTACGCAGTATGCAGTTTAGGT
GACAAAGATTTACAAAAATTCCAGGCAAAAGTAGCAGTTTATCCATCAAACCAGATTTAC
AAGCGCACAATACTGCAGAGTTGACGGTAACGCACATGACTGCAGAGTTGACGGTAACGC
ACATGACTGCAGAGTTGACGGTAACGTGCAATTCCAAATAGTTCCAAGCTCCCTAACAAC
TAGTTTGATACATCCAAGACGCGCGATCACCAACTTGAAGAAAAGAAAACACCTTGCGTT
GGCATACAGTGAACATGCAGTTCTTCTATTCCGTAGATGATATTTATACCCGGCGGAAAC
CACCAGGGCTTGTTATTTGATCTTCAATCGGGCACCTCGGCTCATCACCGTTGCTGGTTC
TCCCTCCTCCGCTGGTAGCGGGTTCTGTCGTTATACCTCGGCCTGTCTGATGCTCTCTGC
GGCACAGGCTCCACCCTTCTCTGCCTCTCCGGAAGACCTTGAACAATCTCTCCATTCACA
AAAAGCTCAGCTGCAAAATTAAATAGATCGCACACCATGAGTACATTACTTTCACAGAGT
GATCAGCTCAGCTGCAAATCAAGTAGATCGCACAACATGAGTACATTACTTCATATGAGG
AACAACCTAATTTATCCAAATATATGGAAATACCATACAGGCTAGGCAGGAAAAAATAAT
AGCCGTGAAGGCATTATTCAAGAAGTTCAGCCTACCTACCAAAGTACAGATCAATATCAG
AGATTTGCTTACAAGTCCATTAGCATCTAAAACAAGGTATTGCCTAAATCAACGAAGTAC
AGAAATAATTACCATCCCTTAGGCAGAACCCACAACAAAGGTACACTAAGCTGGTGTTAG
CCACCTTTCAATTCAGTGAAATGTTACACCTACTGACTTGTGCTCCTTTCATTGAGGACA
CACCCGTTAGAGCAAGACATTGCCAATTAAGATGGACCACAAAACAACTTTGGTAAATAA
TGACCACTGATTCAACTCAAAACAGGAAAAAGGTAGCATATATGTTGACTGTCTCATCTC
CTCTGATCAGAACCCCATTTTTCCAAGGTGCTGAACAGTCAGAGAGACGTTTATTCTTAG
TCCATAAGCAATCAAAGCAGGACATTGCCTTTGAGACATCACAGCTTTGCCAAGATGGAC
TAAAGAAACTTCATAAAGAATGACTATTAGTTAAACTCAAAAGAGATCAAAAGGAAGTAA
AATGAGTTACTTAATGTTTCGTCTCCACTCATCAGAACCCCATCTATTTTGCCAAGGTGC
TGAACAGTTAAGAGTGACAATTATTTTTAGTCCATTAACATTCAAAGCAATACATCGCCA
AGTAGGCTTCAACGCTTTGCCAAGATGGACTACTAAGCCACATTTGGTGAAGAATGGTAA
TGAACCAAACTAAAAAATGGATAGATATCTTTAAATAAGCAACAACCCTAGAGGCGGTAA
ATGTGTGACCAATGTCTCATCTGAAATGATCAGAATCTCATCTCGCTGAGGAGCTGAACC
ATCAGAGAGACATCTTTTCTTAGCCTTTAAGACCTCACAACTTTGCAAAAATGGATTAAA
CAGCATTTGTAAAGAATGACTAGTTAAACTTAAAAGAGATTAAAAGACAGTAAATGAGCT
ATCCAATGTCTCATCTCCACTGATTAGAACCCCATTTCGCTAAGGTGCTAAACTGTAAGA
GATATGTTGTTCTGAGTCCATTAGCATTCAAAGCAAGGCATCGTCGAGTAGGCTTCCTTA
CTTTGCCAAGATGGACTGCAGTACAAATTTGTTGAAAAGAATGATGACTGGCCAAAACTC
CAAAAAAAGATTAATGGTTCAAATAAGCAACACCCCAACATGCGGTAAATGTGCTAGCAG
TGTCTAATCCCCACTGATCTGAATGAGATTTTACCGTGGTGCTAATCAAGAGACGTTTTT
AACTTAGTTCATCAAACATCCAAAGCAGAGCATTGCACGTAAGACGTCATAATTTTCGAA
TATGAACTAGAAGAAACATCATTGTAATCAACTGAATATCCTAGCCCAATAGATAGGCCC
TTCCATTTCGGAGGTGCATTACTCCCTGACAGACACTGGGTATCTGGGATTCATTCGCAT
TGCCGACAGACATAGGTGACACTGTCTGTAGTACTCCCTCCGTCCCAAAATTCTTGTCTT
AGATTTGTCTATACATGAATGTATCTAGTCACATTTTAGTNNNTAGATACATTCATTTCT
AGACAAACCTA