Contig Data
morexGenes
Links



Map Locations of contig_2552535 (3506 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_2552535

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_39192 2 741 bp MLOC_39192.1 Available Available LOC_Os09g20660.1, FRAME:-3, EVALUE:1e-66, 13109.m01965 protein UPF0041 domain containing protein, putative, expressed





CDS Structure of MLOC_39192






Contig Sequence (3506 bp)

>contig_2552535 3506 assembly3_WGSMorex_rbca.fasta
TAATCTTTCATGGTATTCAGTTACCAATAAAATCCAATCTAAAACAAGAGCAGTTCTATT
TGTTTTACACCGTCAAAATTGTGTTATGCGAAAGAGGTATTTCAATCAAATACATGTACC
CTGGGCTTATTTTATAGAGAGGTGACCAAAGTAGATTAAACGAAGCTAGTATGCTAAACA
CAAGATCATGGGGGCGGTCTATATGTGTTTGATGGTCTCGAAGAGCTTGTCAAGATATGT
ACTATTTCAATTTAGTACATGGAAGGAATGCCCATAGTCATGCCCGGATAGATATCTGAT
GTTCAGTGAACCTCATTAATAAATATCGTCTCTCCCATCTAATTTCTCCAATGATCTAAT
CATATATATCTTCTACTCCCTCCGTCCCAAAATTCTTGTCTTAGATTTGTCTACATATGA
ATGCATCTAGTCACGTTTTAGTATTTACATACATCTATTTTTAAACAAACCTAAGACAAG
CATTTTAGGATGGAGGGAGTATATCACAACAAATGACATCGAAATATATTGCAAAATATT
CCCGCAACAACGTGCAGGGTATGGAACATTACACAAAACTTTTGAAACAAGACAAATTTT
AGCCAAAACTAGAAAAACATAGCCTGAATCGCAAAGCAACGACGAAAGTTAGATGCACTG
GATATTCCATGCACGGTAGATACCCTCAAGAAACAAATGGAAAACAAATGGAACCGAGGC
AGTCATCCAAAAAAACAAGGAACACCACTGTGGTTTACACAACTTTGTGGCGGGGACCAA
GCAAAAGATACTATGGACGTGGTTGAAATCAACAGTGCAATCAATTAGCGACTCTGGGGT
GGATAACTTGAACCCCGGCTATGTGCATTGTTGAAAAGAAAAAATATGTCATGAACCATG
ATTCAGGAACAAGAAAGCTGTAACGCTGCATTACAGGAATGAGTATCATAGAAATAGAGA
TTTCCACTTCGTAGGTTTTTTTCTCATGAATAGCATTGCAAAGCTTCAGAAACAAATTTT
ACTTATTGAAAGGCTGGCTGCGGAATCATGGCTCCAGGCTCCGACTTCAGAAACACCACA
CCATTTACTGTTTGGCCTCCGGCTCTTTCTTCGAATCCAGATACCTGCCAAATCAAAACG
CAGACATCATTATCATCACGTACCATGCTACATTGCTACAACACATAAGAGATTGATCGA
TCCGATTGGGGATAAAAGAGAAATACAAAACCATTTAACTGGTAATAAAGGTTTGGTGAT
TGCGACTACGGTACGAAGTGGGAACAATTTTACTGAAGAAAGCTTCTTACCCCTGAGCCC
TAGCACAGCGAGATAAATGATAGAGCTGGACGGTTTCGTTGGAGGCATGGCACGCCAAAA
GCAAGTAGTTCCGGGGCTGTACCATCCATGCAAACCTCATAAAGAGTCCAGAATAGACAC
ACATGGCTGCAGAAAACCATAGGCATTAGTGATAGTTTGAGATCATTTCATCAAATAGGA
ATTGTGAATTGCAAGAGATATCCCTGAGTATTTGACCTACCTGCTGTCATATTGCCAGAT
ATCATCTCAGGAGGCTTGTTCAAGTCAACCAAACCCTATAACCAAAAATAACAGTTACAG
GGATTTATATATGCTACTGGCTCAATATTAACTAAGGATAAGTAAAATCAAGGTAGAACC
TAAGAAGATTATTCAATACAAAGGCCTAATCCATACTACCGGAGAAAATACTCCCACATT
TGATATATACTCCCTCTGTAAGCTAATATAGGACGTTTTAACTATGTCCTATATTAGCTT
ACAGAGGGAGTATCACTTAAACAAATGTGTTAATGCGTCACATCTCTTTATGTGACAGTC
ATGAACAACTCCGAGGTGGCTTATGTGAAGGATAAACAATTTTATATGTTCACCAACACT
AACGCATACTACCATTAACCAGCAGAAACAGAAGGGATATCCCGATGCAACAAAGTGCAC
ATGTTTAGCTCCATAAGCAGTTGCCAAGCACCCCAAAAGACTCATAAATCCATACATATT
ACTGTCACGACTAACAACATCCACGAGTATAGTTTAAAAATGCATTGACCCAAAGTGGGG
AAATGTTGGTTAATCATTGAACATCACCTCTCCCAGCCTGAAACTCACTTTATATGTGAT
GCTGACAGAATATTAACTACGCCAAAACAAAGAGCCTTTTCTTTAAGAGCCCCTACTGTA
GCATCCTGAAACAAATTATCTAGGCGATGTTCGTCAAGCAGAACCATTTTCCTGATACAT
GTACATCAACCATTCAACCCCAAGAAAGGGACAGGACTCAGATTCTCTCGGTAGATTGCA
CAACCTAACAAAGTTCTCGTTGTTGTAATCGACCAATTGCACAGGTTTAGGGAAGAAACA
AGATACAGAATCGACGGAGTGCGTACCGCGAGGACGAAGCCCCAGTTAGCGACGGGGCCC
CAGAAGTGGGTGGTCTTGGGGCCGACGGGACTGTTCACGAACGCCTTGAACGCCGTCGCC
ATGCCTGCCAATCTCAATACCAAATTGCATCAGTGCCCGGGCGATCTCGACAGATGCAGC
AGGGAATACGGGTGGAAATTTCAACTAGGCGGAGGGATCCCGCTATCCATAGGGTTAGGC
GAGTGGATCCACCCGCCCGGGAAGACGGGGAGGGGTAGAGAATCAGAGACCTCGGGTGGA
TGTATCGACGGCGGCGTGTCGGAGAGGGAGCCCGACCGACGGCGAAGGCGAACCTAGAGG
ATGAGAGATGGGGATGGGGGTTTGGTGGAGACGTGGAGTAGATGGAGAATGAGGAACGAT
TTTGTGCCCTTTCTTAAGTTTTTTCCTTGATGCTTCTTTTCTTCCAAGTTGAGCATATAA
ATTATGTGAAATGTAAATTTGAGCATAAAGACGTTTATATCTATCATAAAAAAATGCGTT
TAAGTTTCTTGAATTTGATAAAAAATACGTCAGCTCCATTATCCCAGCACAAGCTCGAGT
ACATGTATGTTGAAACCGCTTCGTCTTTTGCCCCTTCCTTTGAAGAGAAAAACGAGGTCA
AATTACCGGTGATAGTCATTGTTTGTCGAAATTGTCTCCGATGGCTCTCCTTCTCTCGTA
ACCTTTGATTATAGCGCGAAGGGTGAAGGAGGTCGAACCCTACACTCGGTTTGTATACTA
GTAGTCTAGGACTAGTTTGCTTAGGGCATCGACCGACCATGGCTTCTCCTACACTAAATA
AAGTGCTTTCATATCTTTCTTTGATGTGACAGTCTTTTTGCCGTAAGTGACGGATTTTAT
TTGATGGTCAGGTATGGTAGGTGCTGTAGGATCAAAAGTATGTCTAGATTTGGGTCATTA
GACTACTTGACAAGATAAATTTTTTGCATTTTCCCAATTTTACTTGAGAGGCACCTACGG
CAGTTATAACAAGTCAAGTNCACCCTACACATGCAGTTTTAATAGTATAGCAGCGGAAAG
TAACATGCAAGTGTAAATAGAGGAGT