Contig Data
morexGenes
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Map Locations of contig_2552491 (2912 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_2552491

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_39177 2 1422 bp MLOC_39177.1 Available Available LOC_Os03g18840.1, FRAME:-3, EVALUE:0.0, 13103.m02257 protein NUC189 domain containing protein, expressed





CDS Structure of MLOC_39177






Contig Sequence (2912 bp)

>contig_2552491 2912 assembly3_WGSMorex_rbca.fasta
GCAATCTAAGCTGGACAATATCATCAGCACCATAATGTGTTTCACCTTCCAGACTGTATG
CTCTATAACAACATTAGCACCATTTAATTTAGTTTTGGCTAGTGGTTCCTCACGCTGATT
ACAAGGCTCAAACCATGAGTTTGCATGTGGGCTTTTGCACTAATAGGTTTCATTTTCCAC
CACATATCTCTTAGTTGCTAAGTCTGTTCAATTGCTGCAGGTGAGTTCTCACTGCCGTCG
ATGTATCTTTCTCAAAGAGGTTGTAGTGATAGTCTTAAGTTTAAAATATGTTATCCTCAT
TGTGCATCATCTAATACCAAACAGATAGAAGATCAGACGCTAATAGCACAACCCTTCTCC
ATACCAAGAACAATAGTACTTCATACATATAGTAAACAGAAGTACTCAACATTTGCCAAT
CATTAAGATGCCAATTTAACCACAACATTTTGTTTTCATCTATTTGGAAATTCCAGAAGT
CTAATATCAAGAAAAAATAAAACAAATTCATTTATATGACTTTCACATACATAAACTACA
AATCTAGACAATATCACCCCTCTTATGGGAGGGAGTGTTTGAGTGCTCGACAAAGCTCAT
GATAGAAACAAAGAGACACATAAAGATATGCAAGTTATGCAATGCAACATGCTCCAACTA
GTACTGGTAAGTGGTAAGAAGAAACAATACCTTCTCCAGGTCGCTAATTAGTTTTCTTGA
TTTCTCCGAGGGGATAAAACGACCATGAGTTACCAATAAACAGTATATCCAACGCAAAAC
AAACTCAGCACTACCAGACCTGTGGAGAGATACATATCAGGAACCAACAGAGAACATACA
GTTATACATAGCATGCAAAAGACATGGATGTAGGTTCATAAGCACCTTGATCTCCATGCA
GATACTAAATTCTCTAGAAGTTTGCAAGCATCTCCAGGCTTCAGAGATCTTAGATGTGCT
CGAATCTATTGAACAACAACACAAAACATCAAAATGTACCCTTTCACATGAATTAACTTT
CATAGCTATACGTACATAGTAAAGATAAATCAGTATTAGAACTTTAAACTGAAACAGAGT
AACCACAAACCTTCTTGCTGGGTAAATTAGCGTCAATTGTTATGCCACTGCTACTGAACA
GATCTGATAAGATTTTAGTGGCCATGTCAGGATGGCCCGTGAGATTCTTATCAATGATGC
CATATTTCCTCATCATGTCTTCGATGCATATACTGTCATCTTCAATTCTTTGAACAGGAA
CTAAACAAGGAAAATGGTTTTTTAGTGAAGTGATCAAGCTGTATATTAGAACATTCTGAA
AACAACAGACACTGAAAAGTAAATATAATAAGCACTAAAGGCATCCTGGTTCTTCCCACA
AAAATGTAATAAAACATAAATATGCTAATAAATAGCAATCCATGACTCATGTGTCACAGA
ATTAATTGCTACACTGTCACACGTGGAGAATACAACCATGTTATGCTCCAACTGTTGGCT
GTGTTTCACCCCTTGTCGAGAAGGAGAAGACATGGCAAGAGATGATTTACCTCTTTTCTC
GGTTGATCTTGAAGTGGTACCAGTGTCACTATCAATCGCAAGCTTGACACCACTCGGTTT
TGTTACGCTATGTTTTCTTTTCTTTTCCTGTGTATGAAGCTTCGGAAGAGGAAGGATGGC
ATCTTCTGCATTCGCCCGGTCTAGGGCAGTGATAGTTACTACAAAAAAAAGAGACGAGGT
TCAGACCAAGATTCGGAATTGATAACCTTCTCAAATGAAGGCAATAATAATATAATTCCT
ACCAAAATCCCCTGGTTGACCCAGTAGGATATTCATATGAATAACAAACGCACAAGTTGA
ATTACCACCATAACTAATGAACACTAGCATACCTTTTGTTTTAGCAGATTGACCTATCTG
GGGCATGGTGGGTTGAACTGTAGGTAAGAGAACTCCATCTTCAGATACACCCAAATTAAT
ATCATTACCATAACGAACCTTTAGCTTATCGAAAGATGGTTTCACCACGGATCCATATGC
CAGAAGGACATGGGCTGTAGTAGGTCCATTTATTCCTTGAAATTTTGCGGCAAATATCGC
AAAATCCTGATTAGTTCTTGAAAGAGAGGGCTCGGACAAGGCAATCTTAGTAGGCTTCTT
ATTGCGTAGGTCATCCATGCTATTCCCAGACCAGAAATAGCAGATACCAACCTCAGAGAT
AGCCAACACACCTATTACTGCTTCAGTACCATTAGTATCTAAACACCTGCAGTCCACAAA
GATTGCTGGGTGTTCCATAGAGAGTATACAGCTTGAACTCTGAGTTTTACCACTGCCCAA
CTTCCAAATGGCAACATAGCGTTCCCCAACTCCAGATGACAGAACATATTTGCCAGTGTT
ACTAAAAATCACGTTTCTCACAGCCACCTAAATGTTCATGTAGCCAATAGCAACAGGTGT
GCACTTAGAGAAAGCAATACAATTGAAATCATAACAAATTTCAGAAGAGGATCACAGTAC
AGGAGGGCATACAAGACACTCACCGGATGCCCAGAGAACTTTTGAATCTTTTTGTTGTCA
GAAGCATCAAAGGTCCTCAACTGACCAGCTGCTGTTGCTAAAATTGTTCCATCTGATAAG
ACCAAATACAAAGTGCATTTCATTTCTTTGAACTGGGATGGAAATAGATTGGTATGGAGG
AGAGCAGATACAAGCAAAACAAAATGGGCATGCATACCTCATTGCAGCATAAGATTATCT
TTACTACTTATTAAAAAAGCAAACATTATCTTTTTTAAGCACACCCCGTCTAACGTACAC
AGAACAACACGGTCACTGGCGGAGCTTGGTCAAATGTTTTGGAGGGGCCAAACAGAAAAT
ATGGATGCTTAAGGGGGCCAAAAGTCTATATT